Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g020090 Solanum pennellii HOM05D003483 ORTHO05D004101 1.2e-89 333.2 170 100.0
Solyc11g044530.2 Solanum lycopersicum HOM05D003483 ORTHO05D004101 1.1e-84 316.6 165 94.5
CAN.G336.10 Capsicum annuum HOM05D003483 ORTHO05D004101 3.0e-61 238.8 176 75.0
CSS0038053 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 9.8e-52 207.2 158 68.4
Dinv19357 Davidia involucrata HOM05D003483 ORTHO05D004101 9.8e-52 207.2 159 66.7
Hma1.2p1_0557F.1_g178380 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 8.3e-51 204.1 158 65.2
Oeu000192.1 Olea europaea HOM05D003483 ORTHO05D004101 1.4e-50 203.4 178 62.4
vmacro01768 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 5.9e-49 198.0 154 68.2
CSS0036812 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 7.8e-49 197.6 172 62.8
Rhsim11G0130100 Rhododendron simsii HOM05D003483 ORTHO05D004101 5.0e-48 194.9 124 79.8
TPR.G2131 Trifolium pratense HOM05D003483 ORTHO05D004101 1.9e-47 193.0 164 64.6
MD15G1421500 Malus domestica HOM05D003483 ORTHO05D004101 2.5e-47 192.6 128 74.2
Gohir.D01G168600 Gossypium hirsutum HOM05D003483 ORTHO05D004101 3.3e-47 192.2 165 61.8
Gorai.002G209300 Gossypium raimondii HOM05D003483 ORTHO05D004101 3.3e-47 192.2 164 62.2
arahy.Tifrunner.gnm1.ann1.021TT5 Arachis hypogaea HOM05D003483 ORTHO05D004101 4.3e-47 191.8 160 63.8
Actinidia39049 Actinidia chinensis HOM05D003483 ORTHO05D004101 1.2e-46 190.3 178 60.7
Nn1g08897 Nelumbo nucifera HOM05D003483 ORTHO05D004101 1.2e-46 190.3 127 74.0
Ca_00080_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 1.6e-46 189.9 162 62.3
Gohir.A01G177800 Gossypium hirsutum HOM05D003483 ORTHO05D004101 4.7e-46 188.3 164 61.0
Lj9A307T41 Lonicera japonica HOM05D003483 ORTHO05D004101 1.0e-45 187.2 125 73.6
TAR381G1595 Trochodendron aralioides HOM05D003483 ORTHO05D004101 1.8e-45 186.4 135 69.6
CsaV3_1G045010 Cucumis sativus L. HOM05D003483 ORTHO05D004101 2.3e-45 186.0 165 60.0
Thecc.02G039800 Theobroma cacao HOM05D003483 ORTHO05D004101 2.3e-45 186.0 163 62.6
Glyma.08G185800 Glycine max HOM05D003483 ORTHO05D004101 3.1e-45 185.7 163 62.0
Cc02_g22380 Coffea canephora HOM05D003483 ORTHO05D004101 4.0e-45 185.3 179 59.2
Lj6g0009955 Lotus japonicus HOM05D003483 ORTHO05D004101 5.2e-45 184.9 123 73.2
Sabra01G0161900 Salix brachista HOM05D003483 ORTHO05D004101 6.8e-45 184.5 177 55.9
Hund01591 Selenicereus undatus HOM05D003483 ORTHO05D004101 6.8e-45 184.5 164 63.4
VMungo0540G0086 Vigna mungo HOM05D003483 ORTHO05D004101 6.8e-45 184.5 166 62.7
TWI59G0966 Tripterygium wilfordii HOM05D003483 ORTHO05D004101 2.6e-44 182.6 167 60.5
CANSAT11G2084 Cannabis sativa HOM05D003483 ORTHO05D004101 3.4e-44 182.2 120 74.2
COL.COLO4_17880 Corchorus olitorius HOM05D003483 ORTHO05D004101 3.4e-44 182.2 126 71.4
Manes.07G014600 Manihot esculenta HOM05D003483 ORTHO05D004101 4.4e-44 181.8 179 56.4
SalBow6G5065 Salvia bowleyana HOM05D003483 ORTHO05D004101 4.4e-44 181.8 169 60.4
SalBow6G7249 Salvia bowleyana HOM05D003483 ORTHO05D004101 4.4e-44 181.8 169 60.4
Ah.01g002720 Amaranthus hybridus HOM05D003483 ORTHO05D004101 5.8e-44 181.4 118 76.3
Migut.N01039 Erythranthe guttata HOM05D003483 ORTHO05D004101 5.8e-44 181.4 122 74.6
Medtr2g007300 Medicago truncatula HOM05D003483 ORTHO05D004101 5.8e-44 181.4 127 70.9
PGR142G1721 Punica granatum HOM05D003483 ORTHO05D004101 9.8e-44 180.6 162 61.1
Cpa.g.sc2.3 Carica papaya HOM05D003483 ORTHO05D004101 1.3e-43 180.3 124 72.6
Eucgr.I02716 Eucalyptus grandis HOM05D003483 ORTHO05D004101 1.3e-43 180.3 159 61.0
MELO3C010097.2 Cucumis melo HOM05D003483 ORTHO05D004101 1.7e-43 179.9 131 67.2
Prupe.1G566700 Prunus persica HOM05D003483 ORTHO05D004101 1.7e-43 179.9 181 56.4
DCAR_021518 Daucus carota HOM05D003483 ORTHO05D004101 2.2e-43 179.5 120 73.3
Lalb_Chr15g0090651 Lupinus albus HOM05D003483 ORTHO05D004101 2.9e-43 179.1 123 73.2
Nitab4.5_0000044g0170 Nicotiana tabacum HOM05D003483 ORTHO05D004101 2.9e-43 179.1 174 59.2
Potri.001G209600 Populus trichocarpa HOM05D003483 ORTHO05D004101 2.9e-43 179.1 177 55.4
Haze_01644 Corylus avellana HOM05D003483 ORTHO05D004101 3.7e-43 178.7 121 73.6
Haze_01648 Corylus avellana HOM05D003483 ORTHO05D004101 3.7e-43 178.7 121 73.6
Atru.chr6.836 Acer truncatum HOM05D003483 ORTHO05D004101 4.9e-43 178.3 121 73.6
Psat1g224560 Pisum sativum HOM05D003483 ORTHO05D004101 6.4e-43 177.9 124 72.6
QL02p098396 Quercus lobata HOM05D003483 ORTHO05D004101 6.4e-43 177.9 121 71.1
MSTRG.5233 Avicennia marina HOM05D003483 ORTHO05D004101 8.3e-43 177.6 180 55.6
Glyma.15G047000 Glycine max HOM05D003483 ORTHO05D004101 8.3e-43 177.6 122 73.8
Peaxi162Scf00152g01330 Petunia axillaris HOM05D003483 ORTHO05D004101 8.3e-43 177.6 175 57.1
Sed0016447 Sechium edule HOM05D003483 ORTHO05D004101 8.3e-43 177.6 122 71.3
AUR62015054 Chenopodium quinoa HOM05D003483 ORTHO05D004101 1.1e-42 177.2 119 73.9
Sc06g0009790 Simmondsia chinensis HOM05D003483 ORTHO05D004101 1.4e-42 176.8 174 59.2
Cfa005532 Carpinus fangiana HOM05D003483 ORTHO05D004101 1.9e-42 176.4 175 58.9
Aqoxy5G02410 Aquilegia oxysepala HOM05D003483 ORTHO05D004101 3.2e-42 175.6 162 60.5
FvH4_5g29660 Fragaria vesca HOM05D003483 ORTHO05D004101 4.1e-42 175.3 167 58.1
SGA_v2.0_scaffold145G36069 Striga asiatica HOM05D003483 ORTHO05D004101 4.1e-42 175.3 178 57.9
EL10Ac9g22715 Beta vulgaris HOM05D003483 ORTHO05D004101 5.4e-42 174.9 153 60.8
Ciclev10003624m.g Citrus clementina HOM05D003483 ORTHO05D004101 5.4e-42 174.9 125 69.6
FAN18G3047 Fragaria x ananassa HOM05D003483 ORTHO05D004101 7.0e-42 174.5 174 57.5
GSVIVG01022995001 Vitis vinifera HOM05D003483 ORTHO05D004101 7.0e-42 174.5 128 71.9
CiPaw.05G043400 Carya illinoinensis HOM05D003483 ORTHO05D004101 9.2e-42 174.1 121 70.2
PSO017G4111 Papaver somniferum HOM05D003483 ORTHO05D004101 1.2e-41 173.7 121 71.9
Lsat_1_v5_gn_9_118261 Lactuca sativa HOM05D003483 ORTHO05D004101 2.0e-41 172.9 169 58.0
HanXRQChr06g0185051 Helianthus annuus HOM05D003483 ORTHO05D004101 2.7e-41 172.6 173 55.5
MBI03_g28296_MAGBIO Magnolia biondii HOM05D003483 ORTHO05D004101 2.7e-41 172.6 169 54.4
RcHm_v2.0_Chr7g0222941 Rosa chinensis HOM05D003483 ORTHO05D004101 2.7e-41 172.6 161 57.8
Phvul.006G214200 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 1.3e-40 170.2 120 73.3
FAN13G0976 Fragaria x ananassa HOM05D003483 ORTHO05D004101 1.7e-40 169.9 167 56.9
PGSC0003DMG400023753 Solanum tuberosum HOM05D003483 ORTHO05D004101 3.9e-40 168.7 168 55.4
Nitab4.5_0002245g0170 Nicotiana tabacum HOM05D003483 ORTHO05D004101 1.1e-39 167.2 125 68.0
CSS0026849 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 1.5e-39 166.8 122 69.7
CDE02G1133 Ceratophyllum demersum HOM05D003483 ORTHO05D004101 1.9e-39 166.4 122 67.2
Cc02_g22350 Coffea canephora HOM05D003483 ORTHO05D004101 2.5e-39 166.0 126 68.3
Hma1.2p1_0217F.1_g091970 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 2.5e-39 166.0 123 66.7
unitig_699.g19861 Utricularia gibba HOM05D003483 ORTHO05D004101 2.5e-39 166.0 131 61.8
GSVIVG01022998001 Vitis vinifera HOM05D003483 ORTHO05D004101 2.5e-39 166.0 121 69.4
FAN04G0580 Fragaria x ananassa HOM05D003483 ORTHO05D004101 7.3e-39 164.5 163 57.1
CANSAT11G2020 Cannabis sativa HOM05D003483 ORTHO05D004101 9.5e-39 164.1 121 67.8
Nitab4.5_0003819g0040 Nicotiana tabacum HOM05D003483 ORTHO05D004101 9.5e-39 164.1 125 66.4
Cfa005534 Carpinus fangiana HOM05D003483 ORTHO05D004101 2.1e-38 162.9 121 67.8
TAR376G1167 Trochodendron aralioides HOM05D003483 ORTHO05D004101 2.8e-38 162.5 121 71.1
Solyc01g104320.4 Solanum lycopersicum HOM05D003483 ORTHO05D004101 4.7e-38 161.8 178 52.2
CAN.G1577.5 Capsicum annuum HOM05D003483 ORTHO05D004101 8.1e-38 161.0 124 66.1
Peaxi162Scf00011g00242 Petunia axillaris HOM05D003483 ORTHO05D004101 8.1e-38 161.0 121 67.8
arahy.Tifrunner.gnm1.ann1.G5V2PN Arachis hypogaea HOM05D003483 ORTHO05D004101 1.8e-37 159.8 121 64.5
Glyma.15G047700 Glycine max HOM05D003483 ORTHO05D004101 1.8e-37 159.8 121 67.8
Nn1g08607 Nelumbo nucifera HOM05D003483 ORTHO05D004101 1.8e-37 159.8 130 64.6
QL02p098403 Quercus lobata HOM05D003483 ORTHO05D004101 1.8e-37 159.8 121 66.9
vmacro01767 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 1.8e-37 159.8 107 76.6
MSTRG.5236 Avicennia marina HOM05D003483 ORTHO05D004101 2.3e-37 159.5 124 68.5
Dinv24264 Davidia involucrata HOM05D003483 ORTHO05D004101 2.3e-37 159.5 123 67.5
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 3.1e-37 159.1 167 54.5
ECA240G4797 Erigeron canadensis HOM05D003483 ORTHO05D008021 4.0e-37 158.7 109 72.5
VMungo0540G1714 Vigna mungo HOM05D003483 ORTHO05D004101 5.2e-37 158.3 121 66.1
Glyma.08G185000 Glycine max HOM05D003483 ORTHO05D004101 8.9e-37 157.5 121 66.1
COL.COLO4_17881 Corchorus olitorius HOM05D003483 ORTHO05D004101 2.0e-36 156.4 128 63.3
arahy.Tifrunner.gnm1.ann1.MUYK2J Arachis hypogaea HOM05D003483 ORTHO05D004101 2.6e-36 156.0 121 63.6
Duzib248G1166 Durio zibethinus HOM05D003483 ORTHO05D004101 2.6e-36 156.0 165 53.3
Gohir.A04G126900 Gossypium hirsutum HOM05D003483 ORTHO05D004101 4.4e-36 155.2 130 60.8
Gorai.012G160700 Gossypium raimondii HOM05D003483 ORTHO05D004101 4.4e-36 155.2 130 60.8
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 9.8e-36 154.1 125 64.8
CiPaw.06G148300 Carya illinoinensis HOM05D003483 ORTHO05D004101 1.3e-35 153.7 120 65.8
Ca_00085_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 1.3e-35 153.7 124 62.1
Eucgr.I02715 Eucalyptus grandis HOM05D003483 ORTHO05D004101 1.7e-35 153.3 118 68.6
HanXRQChr03g0066831 Helianthus annuus HOM05D003483 ORTHO05D004101 2.9e-35 152.5 132 63.6
Cpa.g.sc2.4 Carica papaya HOM05D003483 ORTHO05D004101 3.7e-35 152.1 131 60.3
SalBow6G5560 Salvia bowleyana HOM05D003483 ORTHO05D004101 4.9e-35 151.8 121 62.8
SalBow6G7247 Salvia bowleyana HOM05D003483 ORTHO05D004101 4.9e-35 151.8 121 62.8
Ciclev10002308m.g Citrus clementina HOM05D003483 ORTHO05D004101 6.4e-35 151.4 167 52.1
Phvul.006G213100 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 8.3e-35 151.0 125 62.4
BcaC06g33930 Brassica carinata HOM05D003483 ORTHO05D004101 1.1e-34 150.6 125 61.6
C07p35050 Brassica napus HOM05D003483 ORTHO05D004101 1.1e-34 150.6 121 63.6
Manes.07G014500 Manihot esculenta HOM05D003483 ORTHO05D004101 1.1e-34 150.6 121 64.5
BolC7t44037H Brassica oleracea HOM05D007119 ORTHO05D009220 1.9e-34 149.8 119 63.9
Psat1g224320 Pisum sativum HOM05D003483 ORTHO05D004101 1.9e-34 149.8 125 60.8
PGR142G0005 Punica granatum HOM05D003483 ORTHO05D004101 1.9e-34 149.8 121 63.6
A06p42270 Brassica napus HOM05D003483 ORTHO05D004101 3.2e-34 149.1 119 63.9
BraA06t27143Z Brassica rapa HOM05D003483 ORTHO05D004101 3.2e-34 149.1 119 63.9
Medtr2g007640 Medicago truncatula HOM05D003483 ORTHO05D004101 5.4e-34 148.3 130 58.5
MD15G1421400 Malus domestica HOM05D003483 ORTHO05D004101 7.1e-34 147.9 183 52.5
AT3G26070 Arabidopsis thaliana HOM05D003483 ORTHO05D004101 9.2e-34 147.5 119 62.2
Aa31LG2G6290 Aethionema arabicum HOM05D003483 ORTHO05D004101 1.2e-33 147.1 119 60.5
AL5G14750 Arabidopsis lyrata HOM05D003483 ORTHO05D004101 1.2e-33 147.1 119 62.2
BcaC06g31094 Brassica carinata HOM05D003483 ORTHO05D004101 2.1e-33 146.4 119 61.3
Thhalv10004837m.g Eutrema salsugineum HOM05D003483 ORTHO05D004101 2.1e-33 146.4 119 61.3
Oeu000193.1 Olea europaea HOM05D003483 ORTHO05D004101 2.7e-33 146.0 130 59.2
ECA240G0807 Erigeron canadensis HOM05D003483 ORTHO05D004101 4.6e-33 145.2 99 71.7
Gohir.D04G171800 Gossypium hirsutum HOM05D003483 ORTHO05D004101 4.6e-33 145.2 117 64.1
THA.LOC104825685 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 4.6e-33 145.2 118 64.4
Thecc.02G039900 Theobroma cacao HOM05D003483 ORTHO05D004101 4.6e-33 145.2 166 51.2
CARHR147060 Cardamine hirsuta HOM05D003483 ORTHO05D004101 1.0e-32 144.1 119 61.3
Carub.0005s0393 Capsella rubella HOM05D003483 ORTHO05D004101 5.1e-32 141.7 119 58.8
Lj6g0022843 Lotus japonicus HOM05D003483 ORTHO05D004101 5.1e-32 141.7 166 51.8
Carub.0005s0394 Capsella rubella HOM05D003483 ORTHO05D004101 6.6e-32 141.4 119 60.5
Lsat_1_v5_gn_9_118240 Lactuca sativa HOM05D003483 ORTHO05D004101 8.6e-32 141.0 119 63.9
Sp2g15270 Schrenkiella parvula HOM05D003483 ORTHO05D004101 8.6e-32 141.0 119 60.5
THA.LOC104824018 Tarenaya hassleriana HOM05D003483 ORTHO05D004101 8.6e-32 141.0 124 58.9
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 1.5e-31 140.2 129 58.9
AL5G14760 Arabidopsis lyrata HOM05D003483 ORTHO05D004101 2.5e-31 139.4 97 67.0
AT3G26080 Arabidopsis thaliana HOM05D003483 ORTHO05D004101 3.3e-31 139.0 97 64.9
vmacro19900 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 3.3e-31 139.0 170 48.8
arahy.Tifrunner.gnm1.ann1.19GFYA Arachis hypogaea HOM05D003483 ORTHO05D004101 7.3e-31 137.9 145 56.6
Lj6g0024243 Lotus japonicus HOM05D003483 ORTHO05D004101 2.3e-29 132.9 129 58.1
SMO347G0483 Selaginella moellendorffii HOM05D003483 ORTHO05D004101 2.3e-29 132.9 106 65.1
Os03g0704100 Oryza sativa ssp. japonica HOM05D003483 ORTHO05D004101 3.1e-29 132.5 129 55.8
Pp3c23_15450 Physcomitrium patens HOM05D003483 ORTHO05D004101 4.0e-29 132.1 115 60.0
Nitab4.5_0001783g0130 Nicotiana tabacum HOM05D003483 ORTHO05D004101 8.9e-29 131.0 70 88.6
AagrBONN_evm.TU.Sc2ySwM_344.1832 Anthoceros agrestis HOM05D003483 ORTHO05D004101 7.6e-28 127.9 106 62.3
Actinidia00213 Actinidia chinensis HOM05D003483 ORTHO05D004101 1.7e-27 126.7 100 65.0
Mapoly0103s0070 Marchantia polymorpha HOM05D003483 ORTHO05D004101 1.7e-27 126.7 118 57.6
AUR62017511 Chenopodium quinoa HOM05D003483 ORTHO05D004101 6.4e-27 124.8 71 83.1
Sabra03G0012000 Salix brachista HOM05D003483 ORTHO05D004101 1.4e-26 123.6 218 41.3
AUR62017510 Chenopodium quinoa HOM05D003483 ORTHO05D004101 1.0e-24 117.5 84 70.2
AUR62015051 Chenopodium quinoa HOM05D003483 ORTHO05D004101 1.3e-24 117.1 84 70.2
Sopen01g046770 Solanum pennellii HOM05D003483 ORTHO05D004101 2.3e-24 116.3 138 49.3
Duzib132G0067 Durio zibethinus HOM05D003483 ORTHO05D004101 1.9e-23 113.2 130 49.2
Haze_01640 Corylus avellana HOM05D003483 ORTHO05D004101 5.6e-23 111.7 131 48.1
Haze_01645 Corylus avellana HOM05D003483 ORTHO05D004101 7.3e-23 111.3 131 48.1
BcaC06g31097 Brassica carinata HOM05D000468 ORTHO05D004101 2.1e-22 109.8 69 73.9
TPR.G30715 Trifolium pratense HOM05D003483 ORTHO05D004101 8.1e-22 107.8 92 60.9
TPR.G22934 Trifolium pratense HOM05D003483 ORTHO05D004101 1.1e-21 107.5 72 73.6
Lj5A251G70 Lonicera japonica HOM05D006411 ORTHO05D007563 1.4e-21 107.1 83 66.3
Hund01593 Selenicereus undatus HOM05D003483 ORTHO05D004101 3.1e-21 105.9 164 45.1
PSO170G3925 Papaver somniferum HOM05D003483 ORTHO05D004101 4.0e-21 105.5 121 49.6
ClCG09G014000 Citrullus lanatus HOM05D003483 ORTHO05D004101 5.8e-20 101.7 89 60.7
TPR.G2065 Trifolium pratense HOM05D003483 ORTHO05D004101 7.1e-18 94.7 66 71.2
PRCOL_00005437 Prasinoderma coloniale HOM05D003483 ORTHO05D004101 1.2e-17 94.0 96 50.0
RcHm_v2.0_Chr7g0222921 Rosa chinensis HOM05D003483 ORTHO05D004101 7.8e-17 91.3 188 36.2
Cre03.g188650 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 1.3e-16 90.5 99 49.5
MCO03G426 Micromonas commoda HOM05D003483 ORTHO05D004101 2.3e-16 89.7 97 50.5
HPP92_011153 Vanilla planifolia HOM05D003483 ORTHO05D004101 7.3e-15 84.7 121 42.1
CBR_g3139 Chara braunii HOM05D003483 ORTHO05D004101 2.1e-14 83.2 93 50.5
Actinidia17473 Actinidia chinensis HOM05D004517 ORTHO05D005366 4.8e-14 82.0 66 63.6
TPR.G31211 Trifolium pratense HOM05D003483 ORTHO05D004101 2.6e-12 76.3 51 70.6
Oeu000382.1 Olea europaea HOM05D003483 ORTHO05D048325 1.4e-10 70.5 103 44.7
MCO15G394 Micromonas commoda HOM05D003483 ORTHO05D004101 1.6e-09 67.0 94 38.3
PRCOL_00003721 Prasinoderma coloniale HOM05D003483 ORTHO05D002254 4.6e-09 65.5 82 43.9
Hma1.2p1_2815F.1_g328900 Hydrangea macrophylla HOM05D003483 ORTHO05D048325 1.0e-08 64.3 41 75.6
Sopen01g046760 Solanum pennellii HOM05D003483 ORTHO05D004101 8.1e-06 54.7 39 69.2


User provided reference genes

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