Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g019700 Solanum pennellii HOM05D006528 ORTHO05D008117 8.0e-42 173.3 87 100.0
PGSC0003DMG400025320 Solanum tuberosum HOM05D006528 ORTHO05D008117 8.0e-42 173.3 87 100.0
PGSC0003DMG400039300 Solanum tuberosum HOM05D006528 ORTHO05D008117 8.0e-42 173.3 87 100.0
CAN.G31.4 Capsicum annuum HOM05D006528 ORTHO05D008117 6.8e-41 170.2 87 98.9
Nitab4.5_0001093g0020 Nicotiana tabacum HOM05D006528 ORTHO05D008117 1.4e-38 162.5 85 94.1
Peaxi162Scf00152g00928 Petunia axillaris HOM05D006528 ORTHO05D008117 2.4e-38 161.8 85 94.1
Nitab4.5_0000001g0270 Nicotiana tabacum HOM05D006528 ORTHO05D008117 3.2e-38 161.4 85 94.1
Hma1.2p1_1093F.1_g256310 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 1.0e-36 156.4 87 93.1
Prupe.8G071000 Prunus persica HOM05D006528 ORTHO05D008117 1.3e-36 156.0 86 89.5
Cc02_g20840 Coffea canephora HOM05D006528 ORTHO05D008117 1.7e-36 155.6 86 90.7
CiPaw.05G028900 Carya illinoinensis HOM05D006528 ORTHO05D008117 5.0e-36 154.1 80 95.0
Rhsim11G0141900 Rhododendron simsii HOM05D006528 ORTHO05D008117 5.0e-36 154.1 80 95.0
Actinidia02398 Actinidia chinensis HOM05D006528 ORTHO05D008117 8.6e-36 153.3 86 89.5
CSS0011274 Camellia sinensis var. sinensis HOM05D006528 ORTHO05D008117 8.6e-36 153.3 80 95.0
MD10G1054900 Malus domestica HOM05D006528 ORTHO05D008117 1.1e-35 152.9 80 93.8
Oeu027056.1 Olea europaea HOM05D006528 ORTHO05D008117 1.1e-35 152.9 80 95.0
Atru.chr6.1284 Acer truncatum HOM05D006528 ORTHO05D008117 1.9e-35 152.1 80 93.8
Dinv16007 Davidia involucrata HOM05D006528 ORTHO05D008117 1.9e-35 152.1 80 95.0
RcHm_v2.0_Chr6g0270691 Rosa chinensis HOM05D006528 ORTHO05D008117 1.9e-35 152.1 80 93.8
Sed0017031 Sechium edule HOM05D006528 ORTHO05D008117 1.9e-35 152.1 79 94.9
vmacro01866 Vaccinium macrocarpon HOM05D006528 ORTHO05D008117 1.9e-35 152.1 80 93.8
Ciclev10029672m.g Citrus clementina HOM05D006528 ORTHO05D008117 3.3e-35 151.4 81 92.6
Aqoxy6G00830 Aquilegia oxysepala HOM05D006528 ORTHO05D008117 4.3e-35 151.0 81 90.1
MD05G1048500 Malus domestica HOM05D006528 ORTHO05D008117 4.3e-35 151.0 80 91.2
HanXRQChr08g0227171 Helianthus annuus HOM05D006528 ORTHO05D008117 7.3e-35 150.2 86 84.9
FvH4_2g11550 Fragaria vesca HOM05D006528 ORTHO05D008117 1.6e-34 149.1 80 92.5
FAN15G1663 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.6e-34 149.1 80 92.5
FAN24G2600 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.6e-34 149.1 80 92.5
FAN27G2089 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.6e-34 149.1 80 92.5
PSO541G2139 Papaver somniferum HOM05D006528 ORTHO05D008117 1.6e-34 149.1 80 91.2
PSO675G1859 Papaver somniferum HOM05D006528 ORTHO05D008117 1.6e-34 149.1 80 91.2
Eucgr.I02615 Eucalyptus grandis HOM05D006528 ORTHO05D008117 2.1e-34 148.7 81 91.4
TAR628G0148 Trochodendron aralioides HOM05D006528 ORTHO05D008117 2.8e-34 148.3 80 91.2
Dinv24144 Davidia involucrata HOM05D006528 ORTHO05D008117 3.6e-34 147.9 80 92.5
Lj9A347T51 Lonicera japonica HOM05D006528 ORTHO05D008117 3.6e-34 147.9 80 92.5
Manes.07G041500 Manihot esculenta HOM05D006528 ORTHO05D008117 3.6e-34 147.9 81 91.4
ClCG10G009640 Citrullus lanatus HOM05D006528 ORTHO05D008117 4.7e-34 147.5 79 92.4
Haze_10502 Corylus avellana HOM05D006528 ORTHO05D008117 4.7e-34 147.5 80 91.2
Potri.007G116400 Populus trichocarpa HOM05D006528 ORTHO05D008117 4.7e-34 147.5 79 93.7
MELO3C018053.2 Cucumis melo HOM05D006528 ORTHO05D008117 6.2e-34 147.1 79 92.4
FAN20G2769 Fragaria x ananassa HOM05D006528 ORTHO05D008117 6.2e-34 147.1 80 91.2
CANSAT21G1972 Cannabis sativa HOM05D006528 ORTHO05D008117 8.0e-34 146.7 89 84.3
Lsat_1_v5_gn_7_82720 Lactuca sativa HOM05D006528 ORTHO05D008117 8.0e-34 146.7 86 83.7
TWI14G0454 Tripterygium wilfordii HOM05D006528 ORTHO05D008117 8.0e-34 146.7 80 90.0
Sabra07G0094700 Salix brachista HOM05D006528 ORTHO05D008117 1.1e-33 146.4 79 92.4
DCAR_003600 Daucus carota HOM05D006528 ORTHO05D008117 1.8e-33 145.6 80 88.8
COL.COLO4_32404 Corchorus olitorius HOM05D006528 ORTHO05D008117 3.1e-33 144.8 81 88.9
Lsat_1_v5_gn_5_110181 Lactuca sativa HOM05D006528 ORTHO05D008117 4.0e-33 144.4 79 88.6
Nn5g29836 Nelumbo nucifera HOM05D006528 ORTHO05D008117 4.0e-33 144.4 86 83.7
PGR142G2367 Punica granatum HOM05D006528 ORTHO05D008117 5.2e-33 144.1 88 85.2
Ah.01g007370 Amaranthus hybridus HOM05D006528 ORTHO05D008117 6.8e-33 143.7 86 83.7
Migut.B00544 Erythranthe guttata HOM05D006528 ORTHO05D008117 6.8e-33 143.7 79 91.1
Phvul.002G213700 Phaseolus vulgaris HOM05D006528 ORTHO05D008117 6.8e-33 143.7 80 87.5
Thecc.02G128200 Theobroma cacao HOM05D006528 ORTHO05D008117 6.8e-33 143.7 88 85.2
Gohir.A13G050500 Gossypium hirsutum HOM05D006528 ORTHO05D008117 8.9e-33 143.3 79 89.9
Gohir.D13G049300 Gossypium hirsutum HOM05D006528 ORTHO05D008117 8.9e-33 143.3 79 89.9
GSVIVG01012516001 Vitis vinifera HOM05D006528 ORTHO05D008117 8.9e-33 143.3 87 82.8
ATR0767G170 Amborella trichopoda HOM05D006528 ORTHO05D008117 1.5e-32 142.5 82 86.6
Ah.01g023880 Amaranthus hybridus HOM05D006528 ORTHO05D008117 2.0e-32 142.1 86 82.6
arahy.Tifrunner.gnm1.ann1.AY2SMN Arachis hypogaea HOM05D006528 ORTHO05D008117 2.0e-32 142.1 80 87.5
EL10Ac9g22060 Beta vulgaris HOM05D006528 ORTHO05D008117 2.0e-32 142.1 86 81.4
arahy.Tifrunner.gnm1.ann1.P7ITSZ Arachis hypogaea HOM05D006528 ORTHO05D008117 2.6e-32 141.7 80 87.5
Lalb_Chr16g0382981 Lupinus albus HOM05D006528 ORTHO05D008117 3.4e-32 141.4 80 86.2
AUR62027098 Chenopodium quinoa HOM05D006528 ORTHO05D008117 4.4e-32 141.0 86 81.4
Duzib248G1107 Durio zibethinus HOM05D006528 ORTHO05D008117 4.4e-32 141.0 79 88.6
Sc05g0005550 Simmondsia chinensis HOM05D006528 ORTHO05D008117 4.4e-32 141.0 80 85.0
Zm00001eb053530 Zea mays HOM05D006528 ORTHO05D008117 4.4e-32 141.0 81 87.7
Ca_00167_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 5.8e-32 140.6 80 87.5
QL11p025380 Quercus lobata HOM05D006528 ORTHO05D008117 5.8e-32 140.6 108 71.3
THA.LOC104819510 Tarenaya hassleriana HOM05D006528 ORTHO05D008117 5.8e-32 140.6 81 82.7
Lalb_Chr09g0326921 Lupinus albus HOM05D006528 ORTHO05D008117 7.5e-32 140.2 80 86.2
arahy.Tifrunner.gnm1.ann1.UT9VTR Arachis hypogaea HOM05D006528 ORTHO05D008117 9.8e-32 139.8 80 85.0
ECA234G2655 Erigeron canadensis HOM05D006528 ORTHO05D008117 1.3e-31 139.4 79 86.1
MBI16_g06019_MAGBIO Magnolia biondii HOM05D006528 ORTHO05D008117 1.3e-31 139.4 99 74.7
Nn1g05616 Nelumbo nucifera HOM05D006528 ORTHO05D008117 1.3e-31 139.4 79 87.3
SEGI_09895 Sequoiadendron giganteum HOM05D006528 ORTHO05D008117 1.3e-31 139.4 82 86.6
AUR62030940 Chenopodium quinoa HOM05D006528 ORTHO05D008117 1.7e-31 139.0 80 85.0
Hund06469 Selenicereus undatus HOM05D006528 ORTHO05D008117 1.7e-31 139.0 80 86.2
Lj4g0001130 Lotus japonicus HOM05D006528 ORTHO05D008117 2.2e-31 138.7 80 85.0
Medtr2g009660 Medicago truncatula HOM05D006528 ORTHO05D008117 2.2e-31 138.7 80 86.2
Os03g0690000 Oryza sativa ssp. japonica HOM05D006528 ORTHO05D008117 2.2e-31 138.7 81 84.0
Cfa004847 Carpinus fangiana HOM05D006528 ORTHO05D008117 2.9e-31 138.3 73 93.2
Glyma.07G182600 Glycine max HOM05D006528 ORTHO05D008117 2.9e-31 138.3 80 85.0
Glyma.08G067300 Glycine max HOM05D006528 ORTHO05D008117 2.9e-31 138.3 80 85.0
HanXRQChr10g0297761 Helianthus annuus HOM05D006528 ORTHO05D008117 2.9e-31 138.3 79 83.5
Psat1g213920 Pisum sativum HOM05D006528 ORTHO05D008117 4.9e-31 137.5 80 85.0
arahy.Tifrunner.gnm1.ann1.QJC347 Arachis hypogaea HOM05D006528 ORTHO05D008117 6.4e-31 137.1 80 83.8
Thhalv10026671m.g Eutrema salsugineum HOM05D006528 ORTHO05D008117 1.4e-30 136.0 81 80.2
Sp7g31370 Schrenkiella parvula HOM05D006528 ORTHO05D008117 1.4e-30 136.0 81 80.2
Carub.0007s0679 Capsella rubella HOM05D006528 ORTHO05D008117 1.9e-30 135.6 80 81.2
Medtr4g093660 Medicago truncatula HOM05D006528 ORTHO05D008117 1.9e-30 135.6 80 83.8
Sed0022924 Sechium edule HOM05D006528 ORTHO05D008117 1.9e-30 135.6 90 77.8
CARHR241740 Cardamine hirsuta HOM05D006528 ORTHO05D008117 2.4e-30 135.2 80 81.2
Ca_18387_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 3.2e-30 134.8 78 85.9
Psat7g101760 Pisum sativum HOM05D006528 ORTHO05D008117 3.2e-30 134.8 80 82.5
HPP92_001604 Vanilla planifolia HOM05D006528 ORTHO05D008117 4.1e-30 134.4 80 83.8
Aa31sc21G60 Aethionema arabicum HOM05D006528 ORTHO05D008117 7.0e-30 133.7 81 77.8
unitig_0.g617 Utricularia gibba HOM05D006528 ORTHO05D008117 7.0e-30 133.7 80 83.8
AL7G17860 Arabidopsis lyrata HOM05D006528 ORTHO05D008117 9.2e-30 133.3 80 80.0
BcaC09g52175 Brassica carinata HOM05D006528 ORTHO05D008117 9.2e-30 133.3 80 80.0
C01p05070 Brassica napus HOM05D006528 ORTHO05D008117 9.2e-30 133.3 80 80.0
BolC1t00489H Brassica oleracea HOM05D006528 ORTHO05D008117 9.2e-30 133.3 80 80.0
AT4G33640 Arabidopsis thaliana HOM05D006528 ORTHO05D008117 1.2e-29 132.9 80 78.8
A01p04680 Brassica napus HOM05D006528 ORTHO05D008117 1.2e-29 132.9 80 80.0
BraA01t00451Z Brassica rapa HOM05D006528 ORTHO05D008117 1.2e-29 132.9 80 80.0
CDE07G0501 Ceratophyllum demersum HOM05D006528 ORTHO05D008117 1.2e-29 132.9 81 81.5
SMO358G0255 Selaginella moellendorffii HOM05D006528 ORTHO05D008117 3.0e-28 128.3 78 80.8
VMungo0251G1582 Vigna mungo HOM05D006528 ORTHO05D008117 5.1e-28 127.5 94 70.2
Solyc11g044230.3 Solanum lycopersicum HOM05D006528 ORTHO05D008117 1.9e-27 125.6 62 100.0
Mapoly0189s0006 Marchantia polymorpha HOM05D006528 ORTHO05D008117 1.2e-26 122.9 78 76.9
Potri.017G042432 Populus trichocarpa HOM05D006528 ORTHO05D008117 1.2e-26 122.9 80 77.5
ECA236G0856 Erigeron canadensis HOM05D006528 ORTHO05D008117 3.1e-25 118.2 68 86.8
SalBow6G1122 Salvia bowleyana HOM05D006528 ORTHO05D008117 8.9e-25 116.7 140 50.7
SalBow6G4989 Salvia bowleyana HOM05D006528 ORTHO05D008117 2.6e-24 115.2 132 52.3
MCO12G136 Micromonas commoda HOM05D006528 ORTHO05D008117 9.9e-24 113.2 78 69.2
Pp3c17_23010 Physcomitrium patens HOM05D006528 ORTHO05D008117 1.7e-23 112.5 78 69.2
CsaV3_4G014760 Cucumis sativus L. HOM05D006528 ORTHO05D008117 3.5e-21 104.8 54 92.6
Hma1.2p1_0160F.1_g070933 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 1.8e-17 92.4 53 84.9
Hma1.2p1_1174F.1_g263935 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 1.8e-17 92.4 53 84.9
Hma1.2p1_1518F.1_g288560 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 1.8e-17 92.4 53 84.9
PRCOL_00002361 Prasinoderma coloniale HOM05D006528 ORTHO05D008117 3.8e-15 84.7 81 53.1
Actinidia00310 Actinidia chinensis HOM05D006528 ORTHO05D008117 4.2e-14 81.3 59 72.9
Gorai.013G055100 Gossypium raimondii HOM05D006528 ORTHO05D008117 9.0e-09 63.5 33 90.9


User provided reference genes

Program Settings