Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 0.0e+00 1102.4 554 100.0
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 1.1e-280 969.5 552 88.9
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 1.9e-237 825.9 422 97.6
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 2.1e-220 769.2 551 69.9
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 1.3e-217 760.0 546 71.2
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 5.9e-215 751.1 537 69.6
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 1.0e-214 750.4 534 71.9
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 2.3e-211 739.2 540 70.0
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 1.7e-209 733.0 539 68.5
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 4.9e-209 731.5 415 87.5
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 1.4e-208 729.9 541 67.3
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 9.2e-208 727.2 534 68.9
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 9.2e-208 727.2 535 66.2
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 1.2e-207 726.9 528 68.0
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 2.1e-204 716.1 529 66.9
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 3.6e-204 715.3 529 66.9
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 6.2e-204 714.5 529 66.9
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 1.4e-203 713.4 528 67.8
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 2.3e-203 712.6 535 66.4
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 3.1e-203 712.2 541 66.7
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 5.2e-203 711.4 534 66.3
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 6.8e-203 711.1 529 67.3
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 2.0e-202 709.5 528 67.4
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 3.4e-202 708.8 535 64.9
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 9.8e-202 707.2 528 67.2
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 1.7e-201 706.4 534 65.5
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 2.9e-201 705.7 551 65.9
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 3.7e-201 705.3 411 84.2
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 6.4e-201 704.5 533 64.7
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 9.2e-200 700.7 527 66.8
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 9.2e-200 700.7 528 66.7
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 1.6e-199 699.9 530 65.7
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 6.0e-199 698.0 529 65.4
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 6.0e-199 698.0 527 65.5
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.0e-198 697.2 527 65.5
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 1.3e-198 696.8 534 66.3
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 3.9e-198 695.3 530 64.5
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 5.1e-198 694.9 550 64.9
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 1.1e-197 693.7 528 66.5
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 2.5e-197 692.6 553 62.2
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 4.3e-197 691.8 530 64.7
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 1.2e-196 690.3 529 65.6
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 1.6e-196 689.9 527 65.7
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 3.6e-196 688.7 528 65.0
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 8.1e-196 687.6 528 64.4
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 1.1e-195 687.2 528 65.0
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 1.8e-195 686.4 532 65.2
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 1.2e-194 683.7 529 65.0
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 1.5e-194 683.3 545 63.1
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 2.0e-194 682.9 527 65.3
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 4.9e-193 678.3 553 63.7
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 4.1e-192 675.2 546 62.6
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 1.6e-191 673.3 528 64.4
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 3.5e-191 672.2 528 64.0
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 6.0e-191 671.4 528 64.0
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 2.1e-188 662.9 528 62.9
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 2.8e-188 662.5 533 62.3
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 3.6e-188 662.1 529 62.6
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 6.2e-188 661.4 536 62.5
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 2.4e-187 659.4 580 59.0
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 1.2e-186 657.1 551 62.6
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 7.6e-186 654.4 591 58.5
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 2.2e-185 652.9 529 62.8
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 1.4e-184 650.2 534 61.6
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 1.6e-183 646.7 534 61.0
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 2.1e-183 646.4 534 61.2
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 1.0e-182 644.0 529 62.2
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 5.1e-182 641.7 534 61.4
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 1.2e-178 630.6 534 60.3
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 2.6e-178 629.4 532 62.6
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 3.8e-177 625.5 553 60.0
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 1.9e-176 623.2 528 59.5
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 4.2e-176 622.1 453 67.5
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 7.1e-176 621.3 530 59.1
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 3.0e-174 615.9 555 57.7
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 6.6e-174 614.8 590 56.1
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 6.6e-174 614.8 529 59.2
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 2.5e-173 612.8 556 57.2
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 5.6e-173 611.7 506 60.9
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 2.1e-172 609.8 539 56.6
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 6.2e-172 608.2 503 61.6
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 2.1e-167 593.2 435 66.2
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 9.6e-165 584.3 554 55.2
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 6.9e-163 578.2 435 65.5
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 4.5e-162 575.5 554 54.5
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 3.2e-160 569.3 536 55.8
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 7.1e-160 568.2 536 55.6
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 2.1e-159 566.6 536 55.4
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 7.4e-157 558.1 534 55.4
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 9.3e-152 541.2 527 53.5
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 2.1e-151 540.0 536 54.1
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 2.9e-145 519.6 527 52.2
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 9.1e-139 498.0 533 47.3
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 2.0e-138 496.9 572 50.7
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 1.5e-133 480.7 541 48.1
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 2.8e-132 476.5 539 47.1
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 2.1e-111 407.1 504 46.4
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 1.4e-110 404.4 352 57.1
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 5.2e-110 402.5 352 56.8
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 2.6e-109 400.2 554 41.3
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 1.7e-108 397.5 287 67.9
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 1.6e-103 380.9 467 44.5
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 4.0e-102 376.3 288 67.4
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 8.9e-102 375.2 212 86.8
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 1.1e-96 358.2 557 40.8
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 2.3e-89 334.0 173 97.1
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 1.5e-88 331.3 287 58.9
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 6.8e-86 322.4 390 47.2
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 4.6e-74 283.1 580 32.8
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 7.3e-72 275.8 561 33.7
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.6e-71 274.6 202 68.3
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 4.8e-55 219.9 546 30.0
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 4.0e-54 216.9 135 82.2
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.2e-53 215.3 131 83.2
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 1.6e-50 204.9 150 64.7
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 1.5e-45 188.3 98 96.9
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 7.6e-45 186.0 171 54.4
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 6.7e-41 172.9 141 61.7
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 2.1e-39 167.9 113 77.0
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 3.1e-38 164.1 123 61.8
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 8.5e-28 129.4 87 73.6
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 1.2e-26 125.6 100 66.0
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 3.9e-25 120.6 459 27.0
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 5.0e-20 103.6 94 55.3
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 1.4e-14 85.5 75 56.0
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 3.1e-14 84.3 72 58.3
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 1.2e-13 82.4 71 57.7
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 2.2e-12 78.2 71 54.9
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 2.2e-12 78.2 71 54.9
Cre01.g023550 Chlamydomonas reinhardtii HOM05D016773 ORTHO05D019668 2.5e-11 74.7 274 28.1
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 4.2e-11 73.9 115 42.6
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 2.1e-10 71.6 124 37.9
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 1.4e-09 68.9 68 54.4
Lsat_1_v5_gn_3_107600 Lactuca sativa HOM05D000629 ORTHO05D013393 3.0e-09 67.8 74 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.5e-08 65.5 270 25.6
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 9.7e-08 62.8 49 55.1
Eucgr.E04263 Eucalyptus grandis HOM05D000311 ORTHO05D000183 8.2e-07 59.7 263 26.6
SMO009G0022 Selaginella moellendorffii HOM05D016773 ORTHO05D019668 1.4e-06 58.9 283 25.8
TWI34G1007 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 1.8e-06 58.5 290 25.9


User provided reference genes

Program Settings