Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 2.9e-30 135.2 64 100.0
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 8.5e-30 133.7 64 98.4
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.1e-28 129.0 64 95.3
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 5.2e-27 124.4 64 90.6
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 5.2e-27 124.4 64 90.6
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 9.8e-18 93.6 64 65.6
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 9.8e-18 93.6 64 65.6
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 1.7e-17 92.8 63 68.3
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 1.1e-16 90.1 63 63.5
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 1.1e-16 90.1 61 65.6
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 1.4e-16 89.7 66 65.2
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 1.4e-16 89.7 63 65.1
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 4.1e-16 88.2 64 64.1
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 7.0e-16 87.4 61 63.9
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 7.0e-16 87.4 61 63.9
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 7.0e-16 87.4 61 63.9
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 9.1e-16 87.0 61 59.0
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 1.2e-15 86.7 63 61.9
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 1.6e-15 86.3 63 57.1
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.6e-15 86.3 61 62.3
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.5e-15 85.1 61 62.3
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 3.5e-15 85.1 60 63.3
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 4.5e-15 84.7 61 60.7
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 5.9e-15 84.3 61 62.3
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 5.9e-15 84.3 63 60.3
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 5.9e-15 84.3 64 62.5
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 1.0e-14 83.6 61 57.4
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 1.7e-14 82.8 61 60.7
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 8.5e-14 80.5 65 53.8
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 8.5e-14 80.5 63 58.7
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 1.1e-13 80.1 61 62.3
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 1.9e-13 79.3 65 61.5
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 2.5e-13 79.0 63 60.3
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 7.2e-13 77.4 64 56.2
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 9.5e-13 77.0 63 63.5
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 9.5e-13 77.0 63 58.7
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.2e-12 76.6 63 57.1
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 1.6e-12 76.3 60 53.3
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 2.1e-12 75.9 60 58.3
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 6.1e-12 74.3 63 54.0
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 8.0e-12 73.9 65 53.8
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 1.4e-11 73.2 63 58.7
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 5.2e-11 71.2 61 52.5
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 5.2e-11 71.2 67 56.7
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 6.8e-11 70.9 61 50.8
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 8.8e-11 70.5 65 50.8
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 8.8e-11 70.5 60 46.7
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 2.0e-10 69.3 63 49.2
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 2.0e-10 69.3 62 54.8
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 2.6e-10 68.9 62 58.1
Peaxi162Scf00078g00515 Petunia axillaris HOM05D004137 ORTHO05D004804 2.6e-10 68.9 40 75.0
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 2.6e-10 68.9 63 57.1
Lalb_Chr13g0295561 Lupinus albus HOM05D004137 ORTHO05D004804 3.4e-10 68.6 56 53.6
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 3.4e-10 68.6 50 58.0
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 7.5e-10 67.4 64 48.4
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 7.5e-10 67.4 63 52.4
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 9.8e-10 67.0 63 57.1
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 1.3e-09 66.6 63 46.0
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 2.2e-09 65.9 61 49.2
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 2.2e-09 65.9 65 46.2
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.2e-09 65.9 65 46.2
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 2.8e-09 65.5 64 48.4
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 4.9e-09 64.7 61 49.2
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 6.3e-09 64.3 67 50.7
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 8.3e-09 63.9 63 55.6
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 1.4e-08 63.2 64 42.2
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 1.4e-08 63.2 64 42.2
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 1.4e-08 63.2 64 42.2
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 1.4e-08 63.2 64 42.2
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 1.4e-08 63.2 64 42.2
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 1.4e-08 63.2 61 45.9
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 1.4e-08 63.2 63 46.0
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 2.4e-08 62.4 64 40.6
Lalb_Chr07g0185901 Lupinus albus HOM05D004137 ORTHO05D004804 3.1e-08 62.0 59 44.1
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 3.1e-08 62.0 62 48.4
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 4.1e-08 61.6 64 40.6
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 4.1e-08 61.6 62 40.3
Phvul.002G247400 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 4.1e-08 61.6 60 48.3
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 5.4e-08 61.2 63 52.4
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 5.4e-08 61.2 64 39.1
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 5.4e-08 61.2 64 39.1
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 9.2e-08 60.5 63 50.8
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 9.2e-08 60.5 64 40.6
VMungo1383G2992 Vigna mungo HOM05D001291 ORTHO05D004804 9.2e-08 60.5 60 48.3
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.2e-07 60.1 63 50.8
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 1.2e-07 60.1 62 38.7
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 1.6e-07 59.7 63 50.8
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 1.6e-07 59.7 63 50.8
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 1.6e-07 59.7 62 38.7
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 2.0e-07 59.3 63 49.2
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 2.0e-07 59.3 65 44.6
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 2.7e-07 58.9 63 50.8
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 2.7e-07 58.9 63 50.8
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 2.7e-07 58.9 63 49.2
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.7e-07 58.9 63 38.1
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 2.7e-07 58.9 63 41.3
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 2.7e-07 58.9 67 44.8
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 2.7e-07 58.9 66 37.9
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 3.5e-07 58.5 62 38.7
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 3.5e-07 58.5 63 50.8
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 3.5e-07 58.5 63 50.8
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 3.5e-07 58.5 63 50.8
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 4.5e-07 58.2 60 43.3
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 4.5e-07 58.2 63 52.4
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 4.5e-07 58.2 60 48.3
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 5.9e-07 57.8 66 48.5
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 5.9e-07 57.8 66 48.5
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 5.9e-07 57.8 63 49.2
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 1.0e-06 57.0 64 39.1
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 1.0e-06 57.0 66 48.5
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 1.0e-06 57.0 64 42.2
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 1.0e-06 57.0 66 48.5
Glyma.08G125200 Glycine max HOM05D004137 ORTHO05D004804 1.3e-06 56.6 60 46.7
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 2.3e-06 55.8 63 44.4
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 2.3e-06 55.8 63 49.2
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 2.9e-06 55.5 63 38.1
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 2.9e-06 55.5 63 38.1
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 3.8e-06 55.1 61 45.9
BolC3t13997H Brassica oleracea HOM05D004137 ORTHO05D004804 3.8e-06 55.1 61 45.9
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 5.0e-06 54.7 63 49.2
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 6.6e-06 54.3 63 39.7
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 8.6e-06 53.9 63 47.6


User provided reference genes

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