Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g018500 Solanum pennellii HOM05D006459 ORTHO05D008414 3.8e-196 688.0 344 100.0
Solyc11g042430.2 Solanum lycopersicum HOM05D006459 ORTHO05D008414 5.5e-195 684.1 344 99.1
CAN.G924.3 Capsicum annuum HOM05D006459 ORTHO05D008414 8.6e-180 633.6 345 93.3
Nitab4.5_0000903g0050 Nicotiana tabacum HOM05D006459 ORTHO05D008414 8.1e-162 573.9 345 85.5
Peaxi162Scf00078g00423 Petunia axillaris HOM05D006459 ORTHO05D008414 1.2e-160 570.1 345 84.6
Migut.C01370 Erythranthe guttata HOM05D006459 ORTHO05D008414 2.6e-160 568.9 349 80.2
MSTRG.1592 Avicennia marina HOM05D006459 ORTHO05D008414 9.9e-160 567.0 350 80.3
Actinidia29387 Actinidia chinensis HOM05D006459 ORTHO05D008414 1.3e-159 566.6 342 82.2
GSVIVG01036383001 Vitis vinifera HOM05D006459 ORTHO05D008414 1.1e-158 563.5 349 81.1
Dinv09391 Davidia involucrata HOM05D006459 ORTHO05D008414 3.2e-158 562.0 345 81.4
Atru.chr13.2479 Acer truncatum HOM05D006459 ORTHO05D008414 5.4e-158 561.2 351 78.1
Thecc.08G176900 Theobroma cacao HOM05D006459 ORTHO05D008414 9.2e-158 560.5 352 80.4
Manes.18G118600 Manihot esculenta HOM05D006459 ORTHO05D008414 3.5e-157 558.5 351 77.5
Potri.019G072900 Populus trichocarpa HOM05D006459 ORTHO05D008414 3.5e-157 558.5 351 78.1
CSS0029003 Camellia sinensis var. sinensis HOM05D006459 ORTHO05D008414 6.0e-157 557.8 344 78.8
TAR628G1703 Trochodendron aralioides HOM05D006459 ORTHO05D008414 6.0e-157 557.8 341 81.2
CiPaw.03G015900 Carya illinoinensis HOM05D006459 ORTHO05D008414 8.6e-156 553.9 347 79.0
Gorai.009G266900 Gossypium raimondii HOM05D006459 ORTHO05D008414 2.5e-155 552.4 342 80.1
Prupe.1G544300 Prunus persica HOM05D006459 ORTHO05D008414 2.5e-155 552.4 352 77.0
VMungo1215G2765 Vigna mungo HOM05D006459 ORTHO05D008414 2.5e-155 552.4 347 76.4
CiPaw.03G015700 Carya illinoinensis HOM05D006459 ORTHO05D008414 3.3e-155 552.0 347 79.0
MD08G1213000 Malus domestica HOM05D006459 ORTHO05D008414 3.3e-155 552.0 352 77.6
EL10Ac1g01666 Beta vulgaris HOM05D006459 ORTHO05D008414 5.6e-155 551.2 343 79.0
Lsat_1_v5_gn_4_65220 Lactuca sativa HOM05D006459 ORTHO05D008414 7.3e-155 550.8 342 77.5
Gohir.D05G255500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 2.8e-154 548.9 342 79.8
Cfa008090 Carpinus fangiana HOM05D006459 ORTHO05D008414 3.6e-154 548.5 347 77.2
TWI75G0925 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 6.2e-154 547.7 347 77.2
Ciclev10020855m.g Citrus clementina HOM05D006459 ORTHO05D008414 8.1e-154 547.4 350 77.4
Cc10_g08780 Coffea canephora HOM05D006459 ORTHO05D008414 8.1e-154 547.4 327 81.3
Sabra19G0084300 Salix brachista HOM05D006459 ORTHO05D008414 1.1e-153 547.0 349 76.8
CsaV3_5G040000 Cucumis sativus L. HOM05D006459 ORTHO05D008414 2.4e-153 545.8 341 78.6
Gohir.A05G253500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 5.2e-153 544.7 342 78.9
SalBow7G1102 Salvia bowleyana HOM05D006459 ORTHO05D008414 5.2e-153 544.7 338 79.0
FvH4_5g33360 Fragaria vesca HOM05D006459 ORTHO05D008414 6.8e-153 544.3 348 78.2
Phvul.002G036200 Phaseolus vulgaris HOM05D006459 ORTHO05D008414 6.8e-153 544.3 347 75.5
HanXRQChr14g0455131 Helianthus annuus HOM05D006459 ORTHO05D008414 1.2e-152 543.5 342 77.5
Potri.013G099900 Populus trichocarpa HOM05D006459 ORTHO05D008414 2.0e-152 542.7 347 76.1
CANSAT54G1068 Cannabis sativa HOM05D006459 ORTHO05D008414 3.4e-152 542.0 347 76.1
RcHm_v2.0_Chr7g0232091 Rosa chinensis HOM05D006459 ORTHO05D008414 3.4e-152 542.0 358 75.7
Haze_13948 Corylus avellana HOM05D006459 ORTHO05D008414 1.1e-150 537.0 335 77.9
QL09p002119 Quercus lobata HOM05D006459 ORTHO05D008414 1.1e-150 537.0 351 76.6
Psat2g187200 Pisum sativum HOM05D006459 ORTHO05D008414 1.4e-150 536.6 346 73.7
Glyma.11G014000 Glycine max HOM05D006459 ORTHO05D008414 1.9e-150 536.2 350 74.6
Medtr5g008450 Medicago truncatula HOM05D006459 ORTHO05D008414 1.9e-150 536.2 346 73.1
Cpa.g.sc21.78 Carica papaya HOM05D006459 ORTHO05D008414 4.2e-150 535.0 351 75.5
Sed0024118 Sechium edule HOM05D006459 ORTHO05D008414 4.2e-150 535.0 340 77.9
Ca_24473_v3 Cicer arietinum L. HOM05D006459 ORTHO05D008414 3.5e-149 531.9 346 73.4
ECA234G2100 Erigeron canadensis HOM05D006459 ORTHO05D008414 7.8e-149 530.8 340 76.5
THA.LOC104815846 Tarenaya hassleriana HOM05D006459 ORTHO05D008414 1.0e-148 530.4 347 74.6
COL.COLO4_24570 Corchorus olitorius HOM05D006459 ORTHO05D008414 1.3e-148 530.0 352 75.9
Oeu023200.3 Olea europaea HOM05D006459 ORTHO05D008414 2.3e-148 529.3 312 82.1
Eucgr.F02979 Eucalyptus grandis HOM05D006459 ORTHO05D008414 3.9e-148 528.5 341 74.2
MBI03_g28420_MAGBIO Magnolia biondii HOM05D006459 ORTHO05D008414 5.1e-148 528.1 332 77.4
Aqoxy5G00842 Aquilegia oxysepala HOM05D006459 ORTHO05D008414 7.3e-147 524.2 358 73.7
arahy.Tifrunner.gnm1.ann1.LVU4B6 Arachis hypogaea HOM05D006459 ORTHO05D008414 1.3e-146 523.5 351 72.1
ClCG08G001020 Citrullus lanatus HOM05D006459 ORTHO05D008414 1.3e-146 523.5 334 77.2
BcaB01g02766 Brassica carinata HOM05D006459 ORTHO05D008414 2.8e-146 522.3 341 74.2
BraA03t12083Z Brassica rapa HOM05D006459 ORTHO05D008414 8.1e-146 520.8 341 73.6
BcaC01g04692 Brassica carinata HOM05D006459 ORTHO05D008414 1.8e-145 519.6 341 73.6
BolC3t15799H Brassica oleracea HOM05D006459 ORTHO05D008414 1.8e-145 519.6 341 73.6
HPP92_005641 Vanilla planifolia HOM05D006459 ORTHO05D008414 1.8e-145 519.6 344 73.8
Sp6g07420 Schrenkiella parvula HOM05D006459 ORTHO05D008414 2.4e-145 519.2 346 73.7
Aa31LG9G11940 Aethionema arabicum HOM05D006459 ORTHO05D008414 4.0e-145 518.5 345 73.9
LjContig00222g0004888 Lotus japonicus HOM05D006459 ORTHO05D008414 4.0e-145 518.5 342 72.8
AL6G43830 Arabidopsis lyrata HOM05D006459 ORTHO05D008414 5.3e-145 518.1 343 73.5
PGR042G0716 Punica granatum HOM05D006459 ORTHO05D008414 5.3e-145 518.1 344 72.7
A03p28850 Brassica napus HOM05D006459 ORTHO05D008414 6.9e-145 517.7 341 73.3
Lalb_Chr09g0320511 Lupinus albus HOM05D006459 ORTHO05D008414 9.0e-145 517.3 333 73.3
AT4G10050 Arabidopsis thaliana HOM05D006459 ORTHO05D008414 1.5e-144 516.5 343 73.2
Nitab4.5_0000999g0010 Nicotiana tabacum HOM05D006459 ORTHO05D008414 2.0e-144 516.2 345 79.4
Carub.0006s2860 Capsella rubella HOM05D006459 ORTHO05D008414 3.4e-144 515.4 343 72.9
TPR.G37896 Trifolium pratense HOM05D006459 ORTHO05D008414 5.8e-144 514.6 398 64.1
FAN04G1764 Fragaria x ananassa HOM05D006459 ORTHO05D008414 7.6e-144 514.2 377 71.1
C03p34880 Brassica napus HOM05D006459 ORTHO05D008414 9.9e-144 513.8 341 72.7
MELO3C022178.2 Cucumis melo HOM05D006459 ORTHO05D008414 9.9e-144 513.8 340 74.7
PSO170G3138 Papaver somniferum HOM05D006459 ORTHO05D008414 1.4e-142 510.0 341 71.8
PSO017G7078 Papaver somniferum HOM05D006459 ORTHO05D008414 3.2e-142 508.8 341 71.8
Thhalv10028776m.g Eutrema salsugineum HOM05D006459 ORTHO05D008414 1.2e-141 506.9 343 72.0
MD15G1395500 Malus domestica HOM05D006459 ORTHO05D008414 1.0e-140 503.8 353 72.2
unitig_8.g4894 Utricularia gibba HOM05D006459 ORTHO05D008414 3.3e-139 498.8 344 71.5
Os04g0443500 Oryza sativa ssp. japonica HOM05D006459 ORTHO05D008414 6.2e-138 494.6 337 72.4
Nitab4.5_0003013g0010 Nicotiana tabacum HOM05D006459 ORTHO05D008414 7.6e-136 487.6 345 75.7
ATR1089G027 Amborella trichopoda HOM05D006459 ORTHO05D008414 1.1e-134 483.8 341 69.2
Zm00001eb082080 Zea mays HOM05D006459 ORTHO05D008414 2.7e-133 479.2 345 69.3
Pp3c6_4660 Physcomitrium patens HOM05D006459 ORTHO05D008414 1.7e-127 459.9 319 68.3
TWI12G1446 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 1.2e-125 453.8 263 82.9
AagrBONN_evm.TU.Sc2ySwM_117.506 Anthoceros agrestis HOM05D006459 ORTHO05D008414 6.0e-125 451.4 318 67.0
Mapoly0007s0278 Marchantia polymorpha HOM05D006459 ORTHO05D008414 6.7e-124 448.0 337 65.6
AUR62034346 Chenopodium quinoa HOM05D006459 ORTHO05D008414 1.3e-119 433.7 253 83.4
SMO356G0681 Selaginella moellendorffii HOM05D006459 ORTHO05D008414 1.9e-115 419.9 312 65.1
Lj9A698G57 Lonicera japonica HOM05D006459 ORTHO05D008414 1.4e-113 413.7 334 65.9
Duzib268G1319 Durio zibethinus HOM05D006459 ORTHO05D008414 4.1e-113 412.1 351 63.8
arahy.Tifrunner.gnm1.ann1.K3NID2 Arachis hypogaea HOM05D006459 ORTHO05D008414 6.9e-113 411.4 398 56.5
DCAR_017359 Daucus carota HOM05D006459 ORTHO05D008414 2.7e-109 399.4 229 83.8
Rhsim02G0145500 Rhododendron simsii HOM05D006459 ORTHO05D008414 7.9e-109 397.9 528 47.7
SGA_v2.0_scaffold118G32601 Striga asiatica HOM05D006459 ORTHO05D008414 4.3e-107 392.1 366 60.9
Sc25g0003010 Simmondsia chinensis HOM05D006459 ORTHO05D008414 1.4e-102 377.1 222 80.6
Nn5g27277 Nelumbo nucifera HOM05D006459 ORTHO05D008414 1.2e-101 374.0 247 76.9
Hma1.2p1_0074F.1_g039070 Hydrangea macrophylla HOM05D006459 ORTHO05D008414 5.0e-87 325.5 194 80.9
SHI16717 Sapria himalayana HOM05D006459 ORTHO05D008414 1.7e-82 310.5 335 52.5
Hma1.2p1_0074F.1_g039080 Hydrangea macrophylla HOM05D006459 ORTHO05D008414 2.0e-75 287.0 167 80.2
vmacro16046 Vaccinium macrocarpon HOM05D006459 ORTHO05D008414 3.8e-71 272.7 177 76.3
CBR_g45928 Chara braunii HOM05D006459 ORTHO05D008414 1.9e-70 270.4 220 59.1
Cre12.g521250 Chlamydomonas reinhardtii HOM05D006459 ORTHO05D008414 4.4e-67 259.2 410 38.0
Haze_26337 Corylus avellana HOM05D006459 ORTHO05D008414 2.9e-66 256.5 327 45.0
HPP92_005619 Vanilla planifolia HOM05D006459 ORTHO05D008414 3.5e-56 223.0 132 75.8
Glyma.01G230800 Glycine max HOM05D006459 ORTHO05D008414 5.8e-51 205.7 127 78.0
MCO04G089 Micromonas commoda HOM05D006459 ORTHO05D008414 5.1e-47 192.6 323 37.8
PRCOL_00002994 Prasinoderma coloniale HOM05D006459 ORTHO05D008414 1.1e-46 191.4 345 35.4
SEGI_15073 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 8.9e-44 181.8 126 70.6
HPP92_005618 Vanilla planifolia HOM05D006459 ORTHO05D008414 3.9e-39 166.4 97 78.4
SMO272G0012 Selaginella moellendorffii HOM05D006459 ORTHO05D008414 2.4e-36 157.1 104 69.2
vmacro16045 Vaccinium macrocarpon HOM05D006459 ORTHO05D008414 1.4e-33 147.9 84 84.5
CBR_g27970 Chara braunii HOM05D006459 ORTHO05D008414 5.4e-25 119.4 83 67.5
FAN08G1548 Fragaria x ananassa HOM05D006459 ORTHO05D008414 1.6e-24 117.9 65 84.6
SEGI_06082 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 1.4e-17 94.7 76 60.5
Nn179s44626 Nelumbo nucifera HOM05D006459 ORTHO05D008414 2.3e-15 87.4 56 82.1
SEGI_00088 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 1.7e-10 71.2 44 70.5
MELO3C033538.2 Cucumis melo HOM05D006459 ORTHO05D169875 8.7e-07 58.9 143 30.1
Os07g0612400 Oryza sativa ssp. japonica HOM05D000579 ORTHO05D000741 4.3e-06 56.6 262 23.3
Lsat_1_v5_gn_2_49420 Lactuca sativa HOM05D006459 ORTHO05D008414 9.6e-06 55.5 30 83.3


User provided reference genes

Program Settings