Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 6.2e-156 554.3 325 100.0
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 5.0e-113 411.8 303 85.5
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.0e-57 228.0 316 57.9
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.8e-57 227.3 318 57.5
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 1.7e-44 184.1 322 50.3
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 8.5e-36 155.2 320 37.5
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 9.3e-35 151.8 345 37.1
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 2.5e-32 143.7 347 34.0
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 4.8e-31 139.4 343 40.2
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 1.4e-30 137.9 324 35.2
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.4e-30 137.9 322 37.0
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 3.1e-30 136.7 325 40.0
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 1.5e-29 134.4 340 32.9
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 2.6e-29 133.7 348 38.5
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 7.7e-29 132.1 335 34.0
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.3e-28 131.3 314 36.3
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 3.8e-28 129.8 315 34.9
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 6.5e-28 129.0 350 34.6
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 1.1e-27 128.3 348 32.8
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.1e-27 128.3 312 36.2
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.4e-27 127.9 340 38.5
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.4e-27 127.9 329 34.3
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 2.5e-27 127.1 320 34.4
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 2.5e-27 127.1 351 36.8
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 2.5e-27 127.1 312 35.9
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 4.2e-27 126.3 329 34.0
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 4.2e-27 126.3 312 37.2
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 7.2e-27 125.6 328 36.0
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 9.4e-27 125.2 327 33.9
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 9.4e-27 125.2 329 34.0
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 1.2e-26 124.8 350 37.1
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 1.2e-26 124.8 360 35.0
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 2.7e-26 123.6 136 52.9
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 3.6e-26 123.2 347 31.7
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 3.6e-26 123.2 347 32.0
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 3.6e-26 123.2 347 32.0
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 6.1e-26 122.5 95 66.3
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 6.1e-26 122.5 133 54.1
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 7.9e-26 122.1 331 40.2
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.0e-25 121.7 345 30.1
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.0e-25 121.7 327 39.4
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.4e-25 121.3 330 41.2
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.8e-25 120.9 134 50.0
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 1.8e-25 120.9 132 53.8
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.3e-25 120.6 134 50.0
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 2.3e-25 120.6 368 36.1
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 2.3e-25 120.6 348 31.3
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 3.0e-25 120.2 142 50.0
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 3.0e-25 120.2 142 50.0
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 3.0e-25 120.2 337 37.4
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 3.0e-25 120.2 332 32.2
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 5.1e-25 119.4 341 31.4
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 5.1e-25 119.4 310 34.8
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 6.7e-25 119.0 338 32.5
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.0e-24 117.5 308 33.4
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 7.4e-24 115.5 321 32.1
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 7.4e-24 115.5 321 32.1
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 7.4e-24 115.5 152 47.4
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 9.7e-24 115.2 308 31.8
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 9.7e-24 115.2 313 30.4
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 1.7e-23 114.4 334 35.0
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 1.7e-23 114.4 339 36.3
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 4.8e-23 112.8 351 36.2
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 8.2e-23 112.1 102 58.8
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.1e-22 111.7 336 31.2
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 1.1e-22 111.7 142 47.9
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 1.4e-22 111.3 380 31.8
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.8e-22 110.9 138 51.4
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.8e-22 110.9 350 37.1
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.8e-22 110.9 307 32.2
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.8e-22 110.9 161 43.5
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 3.1e-22 110.2 132 49.2
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 5.3e-22 109.4 324 31.8
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 6.9e-22 109.0 130 53.8
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 9.1e-22 108.6 302 33.1
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 9.1e-22 108.6 292 32.2
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.2e-21 108.2 129 51.9
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 1.2e-21 108.2 328 34.5
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 2.0e-21 107.5 314 31.5
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.6e-21 107.1 319 31.7
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 4.5e-21 106.3 305 32.5
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 4.5e-21 106.3 340 31.5
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 4.5e-21 106.3 124 49.2
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 5.9e-21 105.9 312 31.1
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 7.7e-21 105.5 154 40.9
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.0e-20 105.1 307 30.3
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 1.0e-20 105.1 83 65.1
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.3e-20 104.8 120 52.5
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 2.9e-20 103.6 137 46.7
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 5.0e-20 102.8 138 49.3
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 6.5e-20 102.4 130 46.9
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 6.5e-20 102.4 136 44.9
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 8.5e-20 102.1 112 50.9
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 8.5e-20 102.1 121 52.1
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 1.1e-19 101.7 92 55.4
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.9e-19 100.9 101 53.5
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.5e-19 100.5 82 63.4
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 3.2e-19 100.1 315 36.5
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 9.4e-19 98.6 150 44.7
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 9.4e-19 98.6 150 44.7
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 9.4e-19 98.6 103 51.5
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 1.6e-18 97.8 133 48.1
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.6e-18 97.8 121 44.6
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 2.1e-18 97.4 79 50.6
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 2.7e-18 97.1 172 39.5
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 3.6e-18 96.7 102 50.0
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 3.6e-18 96.7 138 45.7
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 3.6e-18 96.7 153 42.5
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 3.6e-18 96.7 316 28.2
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 4.7e-18 96.3 98 43.9
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.7e-18 96.3 127 45.7
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 7.9e-18 95.5 297 33.3
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.0e-17 95.1 148 39.2
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 1.0e-17 95.1 114 48.2
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 1.0e-17 95.1 114 48.2
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 1.0e-17 95.1 97 57.7
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 1.4e-17 94.7 143 38.5
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 2.3e-17 94.0 89 55.1
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 2.3e-17 94.0 89 55.1
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.3e-17 94.0 98 42.9
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 3.0e-17 93.6 127 44.1
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 3.0e-17 93.6 88 54.5
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 3.9e-17 93.2 114 47.4
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.9e-17 93.2 143 42.7
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 5.2e-17 92.8 115 45.2
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 6.7e-17 92.4 138 44.2
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 6.7e-17 92.4 129 40.3
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 1.1e-16 91.7 101 49.5
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.1e-16 91.7 128 46.1
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 2.0e-16 90.9 135 43.7
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 2.6e-16 90.5 105 48.6
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 5.7e-16 89.4 103 48.5
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 5.7e-16 89.4 103 48.5
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 7.4e-16 89.0 140 45.0
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 7.4e-16 89.0 114 45.6
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 7.4e-16 89.0 140 45.0
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 7.4e-16 89.0 140 45.0
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 7.4e-16 89.0 114 45.6
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 9.7e-16 88.6 103 47.6
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 9.7e-16 88.6 103 47.6
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 9.7e-16 88.6 103 47.6
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 1.7e-15 87.8 136 42.6
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 1.7e-15 87.8 118 45.8
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 2.2e-15 87.4 76 61.8
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 4.8e-15 86.3 116 44.0
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 6.3e-15 85.9 125 43.2
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 7.0e-14 82.4 115 46.1
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.2e-13 81.6 123 45.5
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 4.5e-13 79.7 139 35.3
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 1.0e-12 78.6 74 56.8
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 1.3e-12 78.2 102 49.0
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.7e-12 77.8 42 95.2
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 2.2e-12 77.4 75 54.7
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 3.8e-12 76.6 80 48.8
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 5.0e-12 76.3 107 45.8
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.9e-11 74.3 103 36.9
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 3.2e-11 73.6 112 42.0
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 9.4e-11 72.0 88 44.3
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 8.0e-10 68.9 110 39.1
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 5.2e-09 66.2 129 39.5
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 5.2e-09 66.2 77 45.5
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 8.8e-09 65.5 42 78.6
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 2.6e-08 63.9 118 33.9
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 3.3e-08 63.5 118 37.3
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 3.7e-07 60.1 86 43.0
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 3.1e-06 57.0 105 38.1


User provided reference genes

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