Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g013180.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 4.1e-69 264.6 135 100.0
Sopen11g018270 Solanum pennellii HOM05D003666 ORTHO05D004770 4.1e-69 264.6 135 100.0
Lj2A1228G69 Lonicera japonica HOM05D003666 ORTHO05D004770 1.6e-68 262.7 135 99.3
Solyc00g500187.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 5.9e-68 260.8 132 100.0
Solyc00g500251.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 5.9e-68 260.8 132 100.0
CAN.G65.28 Capsicum annuum HOM05D003666 ORTHO05D004770 1.3e-67 259.6 135 98.5
unitig_87.g28023 Utricularia gibba HOM05D003666 ORTHO05D004770 5.6e-66 254.2 132 97.0
AL3G44310 Arabidopsis lyrata HOM05D003666 ORTHO05D004770 4.7e-65 251.1 135 95.6
DCAR_032432 Daucus carota HOM05D003666 ORTHO05D004770 8.0e-65 250.4 129 98.4
RcHm_v2.0_MTg0498651 Rosa chinensis HOM05D003666 ORTHO05D004770 8.0e-65 250.4 133 96.2
Lalb_Chr00c24g0407361 Lupinus albus HOM05D003666 ORTHO05D004770 3.0e-64 248.4 135 94.8
Lalb_Chr01g0010981 Lupinus albus HOM05D003666 ORTHO05D004770 3.0e-64 248.4 135 94.8
Sp3g25750 Schrenkiella parvula HOM05D003666 ORTHO05D004770 3.0e-64 248.4 135 94.8
Ah.10g028210 Amaranthus hybridus HOM05D003666 ORTHO05D004770 5.2e-64 247.7 135 94.1
Ah.10g028760 Amaranthus hybridus HOM05D003666 ORTHO05D004770 5.2e-64 247.7 135 94.1
AUR62042334 Chenopodium quinoa HOM05D003666 ORTHO05D004770 5.2e-64 247.7 135 94.1
Nn1g09940 Nelumbo nucifera HOM05D003666 ORTHO05D004770 1.2e-63 246.5 135 94.1
Aa31csc553G50 Aethionema arabicum HOM05D003666 ORTHO05D004770 1.5e-63 246.1 133 94.7
Medtr0082s0060 Medicago truncatula HOM05D003666 ORTHO05D004770 3.4e-63 245.0 134 94.0
PSO210G0035 Papaver somniferum HOM05D003666 ORTHO05D004770 5.7e-63 244.2 129 96.1
arahy.Tifrunner.gnm1.ann1.DQZY30 Arachis hypogaea HOM05D003666 ORTHO05D004770 9.8e-63 243.4 133 94.0
arahy.Tifrunner.gnm1.ann1.G61VPX Arachis hypogaea HOM05D003666 ORTHO05D004770 9.8e-63 243.4 133 94.0
LjContig00439g0017912 Lotus japonicus HOM05D003666 ORTHO05D004770 1.3e-62 243.0 133 94.0
LjContig00439g0019818 Lotus japonicus HOM05D003666 ORTHO05D004770 1.3e-62 243.0 133 94.0
Nitab4.5_0000172g0090 Nicotiana tabacum HOM05D003666 ORTHO05D004770 4.9e-62 241.1 132 93.2
ATMG00580 Arabidopsis thaliana HOM05D003666 ORTHO05D004770 6.4e-62 240.7 129 95.3
Potri.007G061921 Populus trichocarpa HOM05D003666 ORTHO05D004770 6.4e-62 240.7 129 95.3
Sed0020058 Sechium edule HOM05D003666 ORTHO05D004770 1.8e-61 239.2 132 92.4
Nn1g10170 Nelumbo nucifera HOM05D003666 ORTHO05D004770 1.6e-60 236.1 129 93.8
BraSC177t45766Z Brassica rapa HOM05D003666 ORTHO05D004770 5.9e-60 234.2 127 94.5
BraSC77t46648Z Brassica rapa HOM05D003666 ORTHO05D004770 5.9e-60 234.2 127 94.5
Lsat_1_v5_gn_4_39621 Lactuca sativa HOM05D003666 ORTHO05D004770 1.0e-59 233.4 129 93.0
Lalb_Chr06g0172221 Lupinus albus HOM05D003666 ORTHO05D004770 1.7e-59 232.6 135 90.4
HanXRQMTg0579201 Helianthus annuus HOM05D003666 ORTHO05D004770 5.0e-59 231.1 129 91.5
Nitab4.5_0006085g0010 Nicotiana tabacum HOM05D003666 ORTHO05D004770 9.5e-58 226.9 132 86.4
HanXRQChr02g0045121 Helianthus annuus HOM05D003666 ORTHO05D004770 2.8e-57 225.3 129 89.9
Lalb_Chr06g0172341 Lupinus albus HOM05D003666 ORTHO05D004770 2.8e-57 225.3 131 89.3
Psat4g185400 Pisum sativum HOM05D003666 ORTHO05D004770 5.2e-56 221.1 134 84.3
Gohir.D09G016300 Gossypium hirsutum HOM05D003666 ORTHO05D004770 2.0e-55 219.2 127 89.8
SEGI_24024 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 1.1e-50 203.4 133 78.9
SEGI_34311 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 1.1e-50 203.4 133 78.9
Hma1.2p1_0257F.1_g103600 Hydrangea macrophylla HOM05D003666 ORTHO05D004770 4.0e-48 194.9 104 96.2
Gohir.A12G076865 Gossypium hirsutum HOM05D003666 ORTHO05D004770 6.8e-48 194.1 109 91.7
Nitab4.5_0000172g1740 Nicotiana tabacum HOM05D003666 ORTHO05D004770 6.8e-48 194.1 133 76.7
Peaxi162Scf01767g00002 Petunia axillaris HOM05D003666 ORTHO05D004770 3.7e-46 188.3 96 100.0
Nitab4.5_0001788g0230 Nicotiana tabacum HOM05D003666 ORTHO05D004770 8.3e-46 187.2 100 97.0
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 1.4e-45 186.4 114 83.3
Lsat_1_v5_gn_3_108200 Lactuca sativa HOM05D003666 ORTHO05D004770 1.0e-43 180.3 103 90.3
Thhalv10015949m.g Eutrema salsugineum HOM05D003666 ORTHO05D004770 4.3e-42 174.9 98 92.9
CAN.G1.7 Capsicum annuum HOM05D003666 ORTHO05D004770 7.1e-37 157.5 84 92.9
Peaxi162Scf00530g00005 Petunia axillaris HOM05D003666 ORTHO05D004770 2.1e-36 156.0 81 97.5
CAN.G85.17 Capsicum annuum HOM05D003666 ORTHO05D004770 3.0e-35 152.1 84 92.9
CAN.G1001.36 Capsicum annuum HOM05D003666 ORTHO05D004770 1.2e-33 146.7 84 89.3
SHI21047 Sapria himalayana HOM05D003666 ORTHO05D004770 1.2e-33 146.7 95 83.2
TPR.G18511 Trifolium pratense HOM05D003666 ORTHO05D004770 1.2e-33 146.7 86 88.4
arahy.Tifrunner.gnm1.ann1.A5I0RB Arachis hypogaea HOM05D003666 ORTHO05D004770 3.4e-31 138.7 89 83.1
CSS0015485 Camellia sinensis var. sinensis HOM05D003666 ORTHO05D004770 3.5e-28 128.6 130 58.5
Sed0023789 Sechium edule HOM05D003666 ORTHO05D004770 2.3e-27 125.9 92 80.4
Haze_26858 Corylus avellana HOM05D000729 ORTHO05D001063 3.3e-26 122.1 128 49.2
BolC4t23491H Brassica oleracea HOM05D003666 ORTHO05D004770 2.0e-23 112.8 64 89.1
Peaxi162Scf00147g00311 Petunia axillaris HOM05D003666 ORTHO05D004770 7.6e-23 110.9 55 100.0
SalBow1G6983 Salvia bowleyana HOM05D003666 ORTHO05D004770 1.4e-21 106.7 105 59.0
Haze_27149 Corylus avellana HOM05D003666 ORTHO05D004770 6.7e-19 97.8 128 40.6
SMO053G0008 Selaginella moellendorffii HOM05D003666 ORTHO05D004770 4.3e-18 95.1 133 48.1
Oeu022812.1 Olea europaea HOM05D003666 ORTHO05D004770 1.8e-16 89.7 71 73.2
Lalb_Chr00c54g0413571 Lupinus albus HOM05D003666 ORTHO05D004770 4.0e-16 88.6 48 91.7
MELO3C030345.2 Cucumis melo HOM05D003666 ORTHO05D004770 1.2e-15 87.0 55 85.5
Solyc10g062000.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 2.0e-15 86.3 53 79.2
SHI36045 Sapria himalayana HOM05D003666 ORTHO05D004770 2.4e-13 79.3 40 90.0
SEGI_13011 Sequoiadendron giganteum HOM05D001200 ORTHO05D002731 1.1e-10 70.5 100 39.0
EL10As15g24100 Beta vulgaris HOM05D001200 ORTHO05D002731 3.1e-08 62.4 139 32.4
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 3.1e-08 62.4 139 32.4
Peaxi162Scf00030g02118 Petunia axillaris HOM05D001200 ORTHO05D002731 5.3e-08 61.6 137 31.4
Solyc10g045765.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 5.3e-08 61.6 35 77.1
Nn064s42212 Nelumbo nucifera HOM05D001200 ORTHO05D002731 9.0e-08 60.8 137 31.4
PGSC0003DMG400020539 Solanum tuberosum HOM05D001200 ORTHO05D002731 9.0e-08 60.8 140 30.7
PGSC0003DMG401011339 Solanum tuberosum HOM05D001200 ORTHO05D002731 9.0e-08 60.8 140 30.7
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 1.2e-07 60.5 137 30.7
Medtr4g050950 Medicago truncatula HOM05D001200 ORTHO05D002731 1.2e-07 60.5 137 30.7
SHI01159 Sapria himalayana HOM05D003666 ORTHO05D004770 1.2e-07 60.5 55 58.2
TAR022G0002 Trochodendron aralioides HOM05D003666 ORTHO05D004770 1.2e-07 60.5 66 48.5
Lj2P1238T97 Lonicera japonica HOM05D001200 ORTHO05D002731 1.5e-07 60.1 137 30.7
Ciclev10013974m.g Citrus clementina HOM05D001200 ORTHO05D002731 2.0e-07 59.7 137 29.2
Ciclev10027631m.g Citrus clementina HOM05D001200 ORTHO05D002731 2.0e-07 59.7 137 29.2
Ciclev10027650m.g Citrus clementina HOM05D001200 ORTHO05D002731 2.0e-07 59.7 137 29.2
Gohir.1Z049731 Gossypium hirsutum HOM05D001200 ORTHO05D002731 3.4e-07 58.9 140 29.3
Gohir.A02G134201 Gossypium hirsutum HOM05D001200 ORTHO05D010401 3.4e-07 58.9 140 29.3
DCAR_032536 Daucus carota HOM05D001200 ORTHO05D002731 4.5e-07 58.5 107 33.6
SHI15673 Sapria himalayana HOM05D003666 ORTHO05D004770 4.5e-07 58.5 99 40.4
SEGI_03857 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 4.5e-07 58.5 50 64.0
HanXRQChr00c0196g0572481 Helianthus annuus HOM05D001200 ORTHO05D002731 5.8e-07 58.2 143 32.2
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 5.8e-07 58.2 143 32.2
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 5.8e-07 58.2 143 32.2
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 5.8e-07 58.2 143 32.2
HanXRQChr06g0183001 Helianthus annuus HOM05D001200 ORTHO05D002731 5.8e-07 58.2 143 32.2
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 5.8e-07 58.2 143 32.2
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 5.8e-07 58.2 143 32.2
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 5.8e-07 58.2 143 32.2
SalBow1G7634 Salvia bowleyana HOM05D001200 ORTHO05D002731 1.3e-06 57.0 137 29.9
RcHm_v2.0_Chr5g0043051 Rosa chinensis HOM05D001200 ORTHO05D002731 1.7e-06 56.6 137 29.9
RcHm_v2.0_Chr5g0017231 Rosa chinensis HOM05D001200 ORTHO05D002731 2.2e-06 56.2 137 29.2
HanXRQChr03g0073091 Helianthus annuus HOM05D001200 ORTHO05D002731 4.9e-06 55.1 98 35.7
CARHR282420 Cardamine hirsuta HOM05D001200 ORTHO05D002731 6.5e-06 54.7 137 29.2
BcaC03g16699 Brassica carinata HOM05D001200 ORTHO05D002731 8.4e-06 54.3 134 28.4
C09p24620 Brassica napus HOM05D001200 ORTHO05D002731 8.4e-06 54.3 134 28.4
BolSC29t60504H Brassica oleracea HOM05D001200 ORTHO05D002731 8.4e-06 54.3 134 28.4
BolSC35t60702H Brassica oleracea HOM05D001200 ORTHO05D002731 8.4e-06 54.3 134 28.4
BolSC37t60791H Brassica oleracea HOM05D001200 ORTHO05D002731 8.4e-06 54.3 134 28.4
BraSC179t45776Z Brassica rapa HOM05D001200 ORTHO05D002731 8.4e-06 54.3 134 28.4
BraSC59t46549Z Brassica rapa HOM05D001200 ORTHO05D002731 8.4e-06 54.3 134 28.4


User provided reference genes

Program Settings