Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 0.0e+00 1176.8 591 100.0
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 1.1e-81 308.5 353 48.4
Solyc00g142170.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.3e-79 301.6 155 96.1
Solyc00g500255.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.3e-79 301.6 155 96.1
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.3e-79 300.8 325 50.2
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.3e-79 300.8 325 50.2
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.3e-79 300.8 325 50.2
PGSC0003DMG400001137 Solanum tuberosum HOM05D002660 ORTHO05D003902 1.5e-78 298.1 155 94.8
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 3.2e-65 253.8 282 46.8
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.8e-59 233.0 163 69.9
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 5.8e-59 233.0 163 69.9
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 5.8e-59 233.0 163 69.9
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 3.2e-57 227.3 155 72.9
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 1.0e-55 222.2 218 55.5
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 1.7e-55 221.5 154 70.8
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 2.3e-55 221.1 155 71.0
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 7.3e-54 216.1 171 60.2
CAN.G26.9 Capsicum annuum HOM05D002660 ORTHO05D003902 1.6e-53 214.9 155 69.7
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.0e-52 210.3 153 67.3
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 4.5e-51 206.8 300 43.3
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 7.6e-51 206.1 156 66.7
CAN.G72.10 Capsicum annuum HOM05D002660 ORTHO05D003902 2.3e-47 194.5 131 71.0
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 3.9e-47 193.7 342 34.8
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 1.9e-46 191.4 169 56.2
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 1.9e-46 191.4 169 56.2
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 2.5e-46 191.0 169 56.2
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 2.5e-46 191.0 169 56.2
CAN.G505.14 Capsicum annuum HOM05D000743 ORTHO05D000580 4.5e-43 180.3 255 43.1
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 9.9e-43 179.1 160 56.2
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 9.9e-43 179.1 160 56.2
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.0e-39 169.1 151 56.3
CAN.G999.39 Capsicum annuum HOM05D002660 ORTHO05D003902 1.3e-37 162.2 119 67.2
CAN.G841.4 Capsicum annuum HOM05D002660 ORTHO05D003902 2.8e-37 161.0 102 77.5
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 4.5e-35 153.7 167 48.5
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.7e-34 151.8 95 76.8
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 1.9e-33 148.3 167 45.5
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 2.5e-33 147.9 167 45.5
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 2.5e-33 147.9 167 45.5
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 2.5e-33 147.9 167 45.5
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 5.5e-33 146.7 167 45.5
CAN.G1673.2 Capsicum annuum HOM05D002660 ORTHO05D043466 5.5e-33 146.7 76 97.4
Solyc11g056290.3 Solanum lycopersicum HOM05D002660 ORTHO05D043466 5.5e-33 146.7 76 97.4
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 7.1e-33 146.4 183 47.5
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 9.3e-33 146.0 171 47.4
SGA_v2.0_scaffold400G50852 Striga asiatica HOM05D000388 ORTHO05D000473 1.2e-32 145.6 150 50.7
Thhalv10003100m.g Eutrema salsugineum HOM05D002660 ORTHO05D003902 6.0e-32 143.3 116 58.6
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 6.0e-32 143.3 164 45.7
Nitab4.5_0000145g0250 Nicotiana tabacum HOM05D016627 ORTHO05D016354 1.8e-31 141.7 98 72.4
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 5.1e-31 140.2 146 52.1
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 1.9e-30 138.3 157 48.4
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 1.6e-29 135.2 146 51.4
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 6.3e-29 133.3 169 45.0
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 6.3e-29 133.3 169 45.0
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 1.4e-28 132.1 196 38.3
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 1.4e-28 132.1 167 42.5
Solyc11g030860.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.4e-28 132.1 99 63.6
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 2.4e-28 131.3 166 43.4
CAN.G140.15 Capsicum annuum HOM05D002660 ORTHO05D003902 5.9e-27 126.7 83 74.7
Solyc11g030920.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.9e-27 126.7 67 86.6
BolC6t36210H Brassica oleracea HOM05D002660 ORTHO05D003902 7.6e-27 126.3 169 43.2
Solyc11g063540.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 6.5e-26 123.2 76 76.3
Sopen05g012620 Solanum pennellii HOM05D002660 ORTHO05D003902 6.5e-26 123.2 76 76.3
CAN.G819.4 Capsicum annuum HOM05D002660 ORTHO05D003902 8.5e-26 122.9 74 75.7
Nitab4.5_0016443g0020 Nicotiana tabacum HOM05D016627 ORTHO05D016354 8.5e-26 122.9 60 98.3
Peaxi162Scf00625g00034 Petunia axillaris HOM05D002660 ORTHO05D003902 1.1e-25 122.5 72 79.2
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 3.2e-25 120.9 164 44.5
CAN.G993.8 Capsicum annuum HOM05D002660 ORTHO05D003902 2.1e-24 118.2 72 75.0
Nn1g10106 Nelumbo nucifera HOM05D002660 ORTHO05D003902 6.1e-24 116.7 167 43.7
Nn1g10197 Nelumbo nucifera HOM05D002660 ORTHO05D003902 6.1e-24 116.7 167 43.7
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 1.8e-23 115.2 158 43.0
CsaV3_UNG207980 Cucumis sativus L. HOM05D002660 ORTHO05D003902 5.1e-23 113.6 141 43.3
Sed0024408 Sechium edule HOM05D002660 ORTHO05D003902 8.7e-23 112.8 109 50.5
COL.COLO4_04088 Corchorus olitorius HOM05D002660 ORTHO05D003902 3.3e-22 110.9 319 26.3
MBI14_g38258_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.3e-21 109.0 131 47.3
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 2.8e-21 107.8 258 29.5
CAN.G1001.30 Capsicum annuum HOM05D002660 ORTHO05D003902 3.7e-21 107.5 76 68.4
Sed0012925 Sechium edule HOM05D002660 ORTHO05D003902 8.2e-21 106.3 132 46.2
LjContig00315g0012920 Lotus japonicus HOM05D002660 ORTHO05D003902 1.1e-20 105.9 113 50.4
arahy.Tifrunner.gnm1.ann1.DD5JWP Arachis hypogaea HOM05D002660 ORTHO05D003902 1.8e-20 105.1 124 44.4
MBI05_g05346_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.8e-20 105.1 140 44.3
CAN.G1594.2 Capsicum annuum HOM05D016096 ORTHO05D016167 2.4e-20 104.8 60 90.0
GSVIVG01029663001 Vitis vinifera HOM05D002660 ORTHO05D003902 3.1e-20 104.4 105 53.3
arahy.Tifrunner.gnm1.ann1.QE2SNE Arachis hypogaea HOM05D002660 ORTHO05D013121 4.1e-20 104.0 76 53.9
CAN.G505.3 Capsicum annuum HOM05D002660 ORTHO05D003902 5.3e-20 103.6 88 56.8
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 6.9e-20 103.2 164 38.4
CAN.G1.4 Capsicum annuum HOM05D002660 ORTHO05D003902 5.9e-19 100.1 208 36.1
Lsat_1_v5_gn_5_13340 Lactuca sativa HOM05D002660 ORTHO05D003902 5.9e-19 100.1 144 41.7
Lsat_1_v5_gn_5_172580 Lactuca sativa HOM05D002660 ORTHO05D003902 5.9e-19 100.1 144 41.7
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 1.1e-17 95.9 140 40.0
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 1.1e-17 95.9 117 43.6
Peaxi162Scf00625g00036 Petunia axillaris HOM05D002660 ORTHO05D003902 4.2e-17 94.0 111 46.8
MBI14_g38700_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 1.6e-16 92.0 117 41.0
Nitab4.5_0010333g0110 Nicotiana tabacum HOM05D011968 ORTHO05D014241 2.7e-16 91.3 134 43.3
MBI14_g38260_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 3.6e-16 90.9 134 35.8
Solyc09g056290.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 7.9e-16 89.7 87 58.6
Sopen05g012700 Solanum pennellii HOM05D002660 ORTHO05D000001 1.8e-15 88.6 53 73.6
Nitab4.5_0004300g0090 Nicotiana tabacum HOM05D002660 ORTHO05D011807 3.9e-15 87.4 62 61.3
Nitab4.5_0013560g0040 Nicotiana tabacum HOM05D011968 ORTHO05D014241 3.9e-15 87.4 154 39.6
Nitab4.5_0001919g0120 Nicotiana tabacum HOM05D016627 ORTHO05D016354 6.7e-15 86.7 42 92.9
Glyma.12G175100 Glycine max HOM05D002660 ORTHO05D003902 2.6e-14 84.7 124 37.9
Nitab4.5_0009709g0040 Nicotiana tabacum HOM05D002660 ORTHO05D011807 2.6e-14 84.7 60 68.3
Solyc11g063530.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.6e-14 84.7 66 60.6
PGSC0003DMG400002366 Solanum tuberosum HOM05D001785 ORTHO05D012935 2.6e-14 84.7 65 70.8
MBI06_g04141_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 3.3e-14 84.3 148 37.2
Solyc10g047100.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 7.4e-14 83.2 75 54.7
Nitab4.5_0000172g0830 Nicotiana tabacum HOM05D002660 ORTHO05D011807 2.2e-13 81.6 60 65.0
Nitab4.5_0002716g0050 Nicotiana tabacum HOM05D002660 ORTHO05D011807 2.2e-13 81.6 49 75.5
CAN.G1167.15 Capsicum annuum HOM05D002660 ORTHO05D013121 3.7e-13 80.9 50 68.0
Cpa.g.sc263.18 Carica papaya HOM05D002660 ORTHO05D003902 1.1e-12 79.3 78 50.0
Peaxi162Scf00456g00034 Petunia axillaris HOM05D004909 ORTHO05D009316 1.1e-12 79.3 61 68.9
Cfa023009 Carpinus fangiana HOM05D002660 ORTHO05D013121 1.8e-12 78.6 222 30.2
Nitab4.5_0007225g0070 Nicotiana tabacum HOM05D002660 ORTHO05D011807 3.1e-12 77.8 49 71.4
arahy.Tifrunner.gnm1.ann1.KE43QT Arachis hypogaea HOM05D002660 ORTHO05D007974 4.1e-12 77.4 77 46.8
arahy.Tifrunner.gnm1.ann1.QE4HQU Arachis hypogaea HOM05D002660 ORTHO05D007974 4.1e-12 77.4 77 46.8
Dinv06680 Davidia involucrata HOM05D002660 ORTHO05D011644 4.1e-12 77.4 65 53.8
Nitab4.5_0001796g0150 Nicotiana tabacum HOM05D002660 ORTHO05D011807 5.3e-12 77.0 58 63.8
Cfa021334 Carpinus fangiana HOM05D002660 ORTHO05D003902 6.9e-12 76.6 126 38.9
Nn1g09933 Nelumbo nucifera HOM05D002660 ORTHO05D003902 1.2e-11 75.9 121 36.4
Nn1g10009 Nelumbo nucifera HOM05D002660 ORTHO05D003902 1.2e-11 75.9 121 36.4
Nitab4.5_0000120g0050 Nicotiana tabacum HOM05D016627 ORTHO05D016354 1.5e-11 75.5 40 87.5
Nitab4.5_0000172g1410 Nicotiana tabacum HOM05D002660 ORTHO05D011807 1.5e-11 75.5 47 70.2
Nitab4.5_0001788g0190 Nicotiana tabacum HOM05D002660 ORTHO05D011807 1.5e-11 75.5 71 56.3
Nitab4.5_0012260g0040 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.0e-11 75.1 64 53.1
Nitab4.5_0026598g0010 Nicotiana tabacum HOM05D002660 ORTHO05D011807 2.0e-11 75.1 60 65.0
SGA_v2.0_scaffold479G52276 Striga asiatica HOM05D002660 ORTHO05D003902 2.0e-11 75.1 125 36.8
TAR626G0574 Trochodendron aralioides HOM05D002660 ORTHO05D003902 2.0e-11 75.1 104 43.3
Nitab4.5_0003758g0080 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.6e-11 74.7 67 50.7
Oeu021479.1 Olea europaea HOM05D002660 ORTHO05D011706 4.5e-11 73.9 68 45.6
Nitab4.5_0000172g1900 Nicotiana tabacum HOM05D002660 ORTHO05D011807 1.7e-10 72.0 53 66.0
Nitab4.5_0001607g0070 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.2e-10 71.6 76 48.7
ATR0502G001 Amborella trichopoda HOM05D002660 ORTHO05D003902 3.8e-10 70.9 202 26.2
MBI04_g15067_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 3.8e-10 70.9 166 34.3
MBI04_g40993_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 3.8e-10 70.9 166 34.3
MBI14_g44090_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 6.5e-10 70.1 68 51.5
Oeu022571.1 Olea europaea HOM05D001387 ORTHO05D001250 6.5e-10 70.1 72 43.1
SGA_v2.0_scaffold255G45438 Striga asiatica HOM05D002660 ORTHO05D003902 1.1e-09 69.3 108 38.9
arahy.Tifrunner.gnm1.ann1.4WR8AK Arachis hypogaea HOM05D002660 ORTHO05D003902 1.4e-09 68.9 101 43.6
arahy.Tifrunner.gnm1.ann1.64IP8W Arachis hypogaea HOM05D002660 ORTHO05D003902 1.4e-09 68.9 101 43.6
arahy.Tifrunner.gnm1.ann1.MHP2RT Arachis hypogaea HOM05D002660 ORTHO05D003902 1.4e-09 68.9 101 43.6
arahy.Tifrunner.gnm1.ann1.RJKU2P Arachis hypogaea HOM05D002660 ORTHO05D003902 1.4e-09 68.9 101 43.6
Nitab4.5_0005831g0080 Nicotiana tabacum HOM05D011968 ORTHO05D014241 4.2e-09 67.4 138 37.7
Nitab4.5_0002558g0170 Nicotiana tabacum HOM05D016627 ORTHO05D016354 1.2e-08 65.9 37 86.5
Actinidia34821 Actinidia chinensis HOM05D002660 ORTHO05D013121 1.6e-08 65.5 77 35.1
ATMG00490 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.6e-08 65.5 39 64.1
BcaC05g27131 Brassica carinata HOM05D002660 ORTHO05D003902 4.7e-08 63.9 87 41.4
Nitab4.5_0001023g0120 Nicotiana tabacum HOM05D002660 ORTHO05D003902 4.7e-08 63.9 55 49.1
Nitab4.5_0000048g0260 Nicotiana tabacum HOM05D016627 ORTHO05D016354 6.1e-08 63.5 33 90.9
Sed0005295 Sechium edule HOM05D002660 ORTHO05D003902 7.9e-08 63.2 82 39.0
Actinidia11788 Actinidia chinensis HOM05D002660 ORTHO05D013121 1.8e-07 62.0 73 38.4
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 1.8e-07 62.0 156 34.0
Lsat_1_v5_gn_8_93880 Lactuca sativa HOM05D002660 ORTHO05D013121 2.3e-07 61.6 75 40.0
Nitab4.5_0004300g0080 Nicotiana tabacum HOM05D011968 ORTHO05D014241 3.9e-07 60.8 116 32.8
Nitab4.5_0010586g0020 Nicotiana tabacum HOM05D011968 ORTHO05D014241 3.9e-07 60.8 107 37.4
CAN.G1355.2 Capsicum annuum HOM05D002660 ORTHO05D003902 6.7e-07 60.1 66 42.4
Nitab4.5_0002093g0160 Nicotiana tabacum HOM05D011968 ORTHO05D014241 6.7e-07 60.1 49 51.0
SGA_v2.0_scaffold245G44628 Striga asiatica HOM05D002660 ORTHO05D003902 6.7e-07 60.1 109 36.7
Nitab4.5_0000844g0150 Nicotiana tabacum HOM05D011968 ORTHO05D014241 8.8e-07 59.7 91 36.3
SGA_v2.0_scaffold400G50856 Striga asiatica HOM05D002660 ORTHO05D003902 8.8e-07 59.7 71 42.3
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 8.8e-07 59.7 95 37.9
arahy.Tifrunner.gnm1.ann1.1F9GAV Arachis hypogaea HOM05D002660 ORTHO05D003902 1.1e-06 59.3 87 42.5
Cpa.g.sc263.8 Carica papaya HOM05D002660 ORTHO05D003902 1.5e-06 58.9 61 47.5
Nitab4.5_0000085g0170 Nicotiana tabacum HOM05D011968 ORTHO05D014241 2.6e-06 58.2 53 47.2
MBI03_g45449_MAGBIO Magnolia biondii HOM05D017124 ORTHO05D017284 4.4e-06 57.4 153 28.8
HPP92_006535 Vanilla planifolia HOM05D002660 ORTHO05D003902 7.4e-06 56.6 78 33.3


User provided reference genes

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