Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 8.0e-138 493.8 258 100.0
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 1.4e-134 483.0 258 98.1
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 4.2e-131 471.5 258 95.3
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 8.3e-119 430.6 256 87.5
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 9.5e-115 417.2 258 84.9
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 1.6e-114 416.4 256 85.5
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 2.3e-92 342.8 234 73.5
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 3.9e-92 342.0 265 70.2
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 2.5e-91 339.3 239 73.6
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 5.6e-91 338.2 243 71.2
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 8.1e-90 334.3 255 66.3
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 1.8e-89 333.2 255 65.9
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 3.1e-89 332.4 239 69.9
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 6.8e-89 331.3 230 72.2
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 8.9e-89 330.9 230 72.2
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 8.9e-89 330.9 239 68.6
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 1.5e-88 330.1 254 66.9
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 2.0e-88 329.7 230 71.7
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 2.0e-88 329.7 236 70.3
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 5.8e-88 328.2 254 64.6
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 5.8e-88 328.2 261 65.1
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 5.8e-88 328.2 255 65.5
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 9.9e-88 327.4 261 66.3
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 1.3e-87 327.0 236 71.6
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 2.2e-87 326.2 260 68.5
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 2.9e-87 325.9 255 64.7
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 3.7e-87 325.5 227 73.6
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 6.4e-87 324.7 259 66.4
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 8.4e-87 324.3 241 68.9
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 8.4e-87 324.3 244 68.0
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 8.4e-87 324.3 249 68.3
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 1.1e-86 323.9 263 65.0
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 1.9e-86 323.2 234 71.8
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 1.9e-86 323.2 243 69.5
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 1.9e-86 323.2 280 63.6
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 3.2e-86 322.4 243 69.1
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 5.4e-86 321.6 226 70.8
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 5.4e-86 321.6 257 66.1
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 9.2e-86 320.9 255 65.9
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 1.6e-85 320.1 243 68.7
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 3.5e-85 318.9 257 65.8
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 6.0e-85 318.2 263 64.3
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 6.0e-85 318.2 244 67.2
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 6.0e-85 318.2 237 70.5
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 7.8e-85 317.8 244 66.8
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 1.7e-84 316.6 241 67.2
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 2.3e-84 316.2 253 66.0
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 3.0e-84 315.8 241 66.8
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 3.0e-84 315.8 255 65.9
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 3.9e-84 315.5 253 64.8
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 6.6e-84 314.7 229 69.4
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 6.6e-84 314.7 204 77.0
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 6.6e-84 314.7 221 73.3
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 8.6e-84 314.3 235 68.1
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 8.6e-84 314.3 235 68.1
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 8.6e-84 314.3 241 66.8
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 8.6e-84 314.3 221 73.3
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 1.1e-83 313.9 241 65.1
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 2.5e-83 312.8 231 69.7
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 2.5e-83 312.8 214 73.4
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 3.3e-83 312.4 243 65.8
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 4.3e-83 312.0 242 63.6
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 5.6e-83 311.6 230 67.4
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 7.3e-83 311.2 255 63.5
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 7.3e-83 311.2 232 68.1
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 7.3e-83 311.2 236 66.5
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 1.6e-82 310.1 233 67.0
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 1.6e-82 310.1 230 69.1
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 2.1e-82 309.7 237 65.0
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 2.1e-82 309.7 237 65.0
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 2.8e-82 309.3 236 66.1
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 3.6e-82 308.9 228 67.5
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 3.6e-82 308.9 240 67.9
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 3.6e-82 308.9 235 66.0
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 4.7e-82 308.5 249 63.9
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 6.2e-82 308.1 249 63.9
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 8.1e-82 307.8 243 64.6
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 1.1e-81 307.4 233 65.7
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 1.8e-81 306.6 232 66.4
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 1.8e-81 306.6 227 70.0
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 2.4e-81 306.2 260 62.7
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 4.0e-81 305.4 228 68.0
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 5.2e-81 305.1 234 65.0
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 8.9e-81 304.3 245 66.5
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 7.6e-80 301.2 232 68.1
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 2.2e-79 299.7 232 66.4
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 8.4e-79 297.7 234 64.5
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 7.8e-77 291.2 251 61.8
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 6.6e-76 288.1 239 61.5
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 1.5e-75 287.0 234 61.5
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 5.3e-73 278.5 230 60.9
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 6.9e-73 278.1 224 63.4
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 2.0e-72 276.6 240 59.2
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 3.8e-71 272.3 196 69.9
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 7.1e-70 268.1 156 89.1
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 9.3e-70 267.7 383 42.8
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 5.8e-64 248.4 241 57.3
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 7.1e-62 241.5 246 52.0
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 1.2e-61 240.7 183 66.7
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 3.3e-59 232.6 198 59.1
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 2.4e-57 226.5 222 54.1
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 7.6e-56 221.5 223 52.9
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 3.8e-55 219.2 206 60.2
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 5.5e-46 188.7 139 68.3
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 6.3e-42 175.3 238 43.3
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 1.0e-36 157.9 98 79.6
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 6.7e-36 155.2 111 69.4
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 1.6e-29 134.0 120 55.8
Hma1.2p1_0738F.1_g211000 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 4.2e-22 109.4 85 65.9
PRCOL_00004129 Prasinoderma coloniale HOM05D007261 ORTHO05D009163 1.6e-21 107.5 186 40.9
PRCOL_00001953 Prasinoderma coloniale HOM05D005243 ORTHO05D006670 2.0e-08 63.9 178 30.9
Cfa006116 Carpinus fangiana HOM05D001530 ORTHO05D003676 1.0e-07 61.6 229 26.2
CSS0047387 Camellia sinensis var. sinensis HOM05D001530 ORTHO05D003676 1.3e-07 61.2 199 25.1
Cre06.g262000 Chlamydomonas reinhardtii HOM05D001530 ORTHO05D003676 1.3e-07 61.2 178 24.7
Duzib138G1359 Durio zibethinus HOM05D001530 ORTHO05D003676 1.3e-07 61.2 228 26.8
Oeu029305.2 Olea europaea HOM05D001530 ORTHO05D003676 1.3e-07 61.2 246 25.6
Lalb_Chr13g0304101 Lupinus albus HOM05D001530 ORTHO05D003676 1.7e-07 60.8 225 24.9
TAR365G1025 Trochodendron aralioides HOM05D001530 ORTHO05D003676 1.7e-07 60.8 229 26.2
Sc17g0004010 Simmondsia chinensis HOM05D001530 ORTHO05D003676 2.2e-07 60.5 208 27.9
HanXRQChr01g0002331 Helianthus annuus HOM05D001530 ORTHO05D003676 2.9e-07 60.1 239 26.8
MCO11G640 Micromonas commoda HOM05D005243 ORTHO05D006670 2.9e-07 60.1 226 27.4
arahy.Tifrunner.gnm1.ann1.AUQ61E Arachis hypogaea HOM05D001530 ORTHO05D003676 3.8e-07 59.7 241 27.8
EL10Ac1g01265 Beta vulgaris HOM05D005243 ORTHO05D006670 3.8e-07 59.7 185 31.9
Gohir.D02G037800 Gossypium hirsutum HOM05D001530 ORTHO05D003676 3.8e-07 59.7 199 27.1
Gorai.005G041700 Gossypium raimondii HOM05D001530 ORTHO05D003676 3.8e-07 59.7 199 27.1
CANSAT25G1297 Cannabis sativa HOM05D001530 ORTHO05D003676 6.5e-07 58.9 208 26.9
Hma1.2p1_0257F.1_g103700 Hydrangea macrophylla HOM05D001530 ORTHO05D003676 6.5e-07 58.9 199 27.1
MD03G1267800 Malus domestica HOM05D001530 ORTHO05D003676 6.5e-07 58.9 210 29.0
THA.LOC104801224 Tarenaya hassleriana HOM05D001530 ORTHO05D003676 6.5e-07 58.9 233 24.9
Dinv32953 Davidia involucrata HOM05D001530 ORTHO05D003676 8.5e-07 58.5 213 24.9
AUR62030088 Chenopodium quinoa HOM05D001530 ORTHO05D003676 1.1e-06 58.2 214 24.8
Hund16915 Selenicereus undatus HOM05D005243 ORTHO05D006670 1.5e-06 57.8 179 30.7
Ah.07g203960 Amaranthus hybridus HOM05D001530 ORTHO05D003676 1.9e-06 57.4 240 24.2
EL10Ac3g06357 Beta vulgaris HOM05D001530 ORTHO05D003676 1.9e-06 57.4 241 25.3
AUR62038530 Chenopodium quinoa HOM05D005243 ORTHO05D006670 1.9e-06 57.4 185 29.7
Lalb_Chr01g0000051 Lupinus albus HOM05D005243 ORTHO05D006670 2.5e-06 57.0 179 30.7
Sed0026563 Sechium edule HOM05D001530 ORTHO05D003676 2.5e-06 57.0 201 25.9
AUR62013377 Chenopodium quinoa HOM05D005243 ORTHO05D006670 3.2e-06 56.6 185 29.7
Cre01.g043050 Chlamydomonas reinhardtii HOM05D005243 ORTHO05D006670 3.2e-06 56.6 154 29.2
MELO3C021403.2 Cucumis melo HOM05D001530 ORTHO05D003676 3.2e-06 56.6 222 25.2
CsaV3_6G018580 Cucumis sativus L. HOM05D001530 ORTHO05D003676 3.2e-06 56.6 222 25.2
Lsat_1_v5_gn_5_187301 Lactuca sativa HOM05D001530 ORTHO05D003676 3.2e-06 56.6 210 27.1
arahy.Tifrunner.gnm1.ann1.T8IATB Arachis hypogaea HOM05D001530 ORTHO05D004168 4.2e-06 56.2 201 27.4
Carub.0001s0237 Capsella rubella HOM05D001530 ORTHO05D003676 4.2e-06 56.2 212 25.9
Thhalv10009966m.g Eutrema salsugineum HOM05D001530 ORTHO05D003676 4.2e-06 56.2 202 26.7
Pp3c25_4890 Physcomitrium patens HOM05D001530 ORTHO05D003676 5.5e-06 55.8 250 22.0
AL1G12750 Arabidopsis lyrata HOM05D001530 ORTHO05D003676 7.2e-06 55.5 202 25.7
DCAR_024580 Daucus carota HOM05D001530 ORTHO05D003676 7.2e-06 55.5 241 25.3
SalBow2G1380 Salvia bowleyana HOM05D001530 ORTHO05D003676 7.2e-06 55.5 217 26.7
Sp1g02260 Schrenkiella parvula HOM05D001530 ORTHO05D003676 7.2e-06 55.5 202 26.7
A09p68320 Brassica napus HOM05D001530 ORTHO05D003676 9.4e-06 55.1 213 26.3
BraA09t42168Z Brassica rapa HOM05D001530 ORTHO05D003676 9.4e-06 55.1 213 26.3


User provided reference genes

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