Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g017200 Solanum pennellii HOM05D004678 ORTHO05D005880 2.5e-175 618.6 305 100.0
PGSC0003DMG400032541 Solanum tuberosum HOM05D004678 ORTHO05D005880 5.0e-155 551.2 313 88.2
Solyc04g009350.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 8.5e-155 550.4 313 87.5
Sopen04g004470 Solanum pennellii HOM05D004678 ORTHO05D005880 8.5e-155 550.4 313 87.5
Nitab4.5_0007261g0010 Nicotiana tabacum HOM05D004678 ORTHO05D005880 2.1e-153 545.8 313 87.5
Nitab4.5_0002113g0110 Nicotiana tabacum HOM05D004678 ORTHO05D005880 1.8e-152 542.7 311 87.5
Peaxi162Scf00760g00021 Petunia axillaris HOM05D004678 ORTHO05D005880 3.9e-152 541.6 313 86.3
CAN.G624.22 Capsicum annuum HOM05D004678 ORTHO05D005880 4.3e-151 538.1 322 84.8
CSS0026818 Camellia sinensis var. sinensis HOM05D004678 ORTHO05D005880 4.5e-140 501.5 311 79.4
Cc02_g14680 Coffea canephora HOM05D004678 ORTHO05D005880 2.5e-138 495.7 309 79.9
CiPaw.16G062100 Carya illinoinensis HOM05D004678 ORTHO05D005880 5.5e-138 494.6 309 78.6
Oeu044536.1 Olea europaea HOM05D004678 ORTHO05D005880 5.5e-138 494.6 313 78.0
Actinidia04312 Actinidia chinensis HOM05D004678 ORTHO05D005880 7.2e-138 494.2 308 79.2
Migut.L01374 Erythranthe guttata HOM05D004678 ORTHO05D005880 9.4e-138 493.8 313 78.3
MD12G1021300 Malus domestica HOM05D004678 ORTHO05D005880 9.4e-138 493.8 309 79.0
Cfa018194 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.2e-137 493.4 309 78.3
Hma1.2p1_1487F.1_g286570 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 1.6e-137 493.0 308 79.5
Lalb_Chr01g0010011 Lupinus albus HOM05D004678 ORTHO05D005880 2.1e-137 492.7 309 78.3
AUR62004653 Chenopodium quinoa HOM05D004678 ORTHO05D005880 3.6e-137 491.9 317 77.0
Ciclev10001274m.g Citrus clementina HOM05D004678 ORTHO05D005880 3.6e-137 491.9 313 77.3
Aqoxy6G00120 Aquilegia oxysepala HOM05D004678 ORTHO05D005880 4.7e-137 491.5 309 78.3
CANSAT21G1357 Cannabis sativa HOM05D004678 ORTHO05D005880 6.1e-137 491.1 313 77.3
Hma1.2p1_0285F.1_g113940 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 8.0e-137 490.7 308 79.2
TWI34G1123 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 5.2e-136 488.0 309 78.0
Sc23g0001180 Simmondsia chinensis HOM05D004678 ORTHO05D005880 6.7e-136 487.6 311 76.8
QL04p000013 Quercus lobata HOM05D004678 ORTHO05D005880 8.8e-136 487.3 309 76.7
SalBow2G0558 Salvia bowleyana HOM05D004678 ORTHO05D005880 8.8e-136 487.3 313 76.4
SalBow2G2825 Salvia bowleyana HOM05D004678 ORTHO05D005880 8.8e-136 487.3 313 76.4
MSTRG.13391 Avicennia marina HOM05D004678 ORTHO05D005880 1.2e-135 486.9 312 77.2
CiPaw.15G082000 Carya illinoinensis HOM05D004678 ORTHO05D005880 1.5e-135 486.5 309 77.7
QL02p033997 Quercus lobata HOM05D004678 ORTHO05D005880 2.0e-135 486.1 309 76.4
FvH4_7g02740 Fragaria vesca HOM05D004678 ORTHO05D005880 5.7e-135 484.6 309 77.0
FAN06G1846 Fragaria x ananassa HOM05D004678 ORTHO05D005880 5.7e-135 484.6 309 77.0
FAN10G3317 Fragaria x ananassa HOM05D004678 ORTHO05D005880 5.7e-135 484.6 309 77.0
TWI32G0349 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 5.7e-135 484.6 311 75.6
AUR62023572 Chenopodium quinoa HOM05D004678 ORTHO05D005880 7.5e-135 484.2 309 77.3
LjContig00222g0007085 Lotus japonicus HOM05D004678 ORTHO05D005880 7.5e-135 484.2 309 76.4
COL.COLO4_19882 Corchorus olitorius HOM05D004678 ORTHO05D005880 9.7e-135 483.8 309 75.7
QL04p003199 Quercus lobata HOM05D004678 ORTHO05D005880 9.7e-135 483.8 308 76.3
RcHm_v2.0_Chr1g0322001 Rosa chinensis HOM05D004678 ORTHO05D005880 1.3e-134 483.4 309 76.4
Atru.chr13.1797 Acer truncatum HOM05D004678 ORTHO05D005880 1.7e-134 483.0 304 78.0
EL10Ac1g00076 Beta vulgaris HOM05D004678 ORTHO05D005880 1.7e-134 483.0 310 76.1
Prupe.6G194700 Prunus persica HOM05D004678 ORTHO05D005880 1.7e-134 483.0 309 75.7
Thecc.08G181800 Theobroma cacao HOM05D004678 ORTHO05D005880 2.2e-134 482.6 309 75.4
AT5G10330 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 2.8e-134 482.3 313 75.7
Duzib177G0967 Durio zibethinus HOM05D004678 ORTHO05D005880 2.8e-134 482.3 310 75.2
FAN03G3192 Fragaria x ananassa HOM05D004678 ORTHO05D005880 2.8e-134 482.3 309 76.7
Phvul.004G083900 Phaseolus vulgaris HOM05D004678 ORTHO05D005880 2.8e-134 482.3 309 77.0
AL2G31530 Arabidopsis lyrata HOM05D004678 ORTHO05D005880 3.7e-134 481.9 313 75.7
Hund16801 Selenicereus undatus HOM05D004678 ORTHO05D005880 3.7e-134 481.9 309 76.7
Carub.0002s1870 Capsella rubella HOM05D004678 ORTHO05D005880 8.2e-134 480.7 313 75.4
Eucgr.G01597 Eucalyptus grandis HOM05D004678 ORTHO05D005880 1.1e-133 480.3 305 78.0
Ca_07561_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 1.4e-133 479.9 308 77.3
Eucgr.L00028 Eucalyptus grandis HOM05D004678 ORTHO05D005880 1.4e-133 479.9 305 77.7
Glyma.16G155800 Glycine max HOM05D004678 ORTHO05D005880 1.4e-133 479.9 309 76.4
THA.LOC104800109 Tarenaya hassleriana HOM05D004678 ORTHO05D005880 1.4e-133 479.9 313 75.7
CARHR064740 Cardamine hirsuta HOM05D004678 ORTHO05D005880 4.1e-133 478.4 313 75.1
HanXRQChr14g0428861 Helianthus annuus HOM05D004678 ORTHO05D005880 4.1e-133 478.4 308 76.6
GSVIVG01034496001 Vitis vinifera HOM05D004678 ORTHO05D005880 4.1e-133 478.4 308 76.6
Gohir.D09G114300 Gossypium hirsutum HOM05D004678 ORTHO05D005880 5.3e-133 478.0 309 75.1
HanXRQChr06g0184941 Helianthus annuus HOM05D004678 ORTHO05D005880 7.0e-133 477.6 308 76.9
DCAR_026915 Daucus carota HOM05D004678 ORTHO05D005880 9.1e-133 477.2 308 76.0
AT1G71920 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 1.2e-132 476.9 308 76.0
BcaC03g15310 Brassica carinata HOM05D004678 ORTHO05D005880 1.2e-132 476.9 313 75.4
PGR142G3802 Punica granatum HOM05D004678 ORTHO05D005880 1.2e-132 476.9 309 76.4
TAR381G1101 Trochodendron aralioides HOM05D004678 ORTHO05D005880 1.2e-132 476.9 309 76.4
C02p29210 Brassica napus HOM05D004678 ORTHO05D005880 1.6e-132 476.5 313 75.4
BolC2t08971H Brassica oleracea HOM05D004678 ORTHO05D005880 1.6e-132 476.5 313 75.4
SGA_v2.0_scaffold8G04287 Striga asiatica HOM05D004678 ORTHO05D005880 1.6e-132 476.5 339 71.7
ClCG07G016110 Citrullus lanatus HOM05D004678 ORTHO05D005880 3.5e-132 475.3 308 75.6
ClCG09G010470 Citrullus lanatus HOM05D004678 ORTHO05D005880 3.5e-132 475.3 309 75.1
Lj3A851T66 Lonicera japonica HOM05D004678 ORTHO05D005880 3.5e-132 475.3 335 72.8
VMungo0464G0500 Vigna mungo HOM05D004678 ORTHO05D005880 3.5e-132 475.3 309 75.7
BcaB03g14912 Brassica carinata HOM05D004678 ORTHO05D005880 4.5e-132 474.9 313 74.8
BcaB05g24693 Brassica carinata HOM05D004678 ORTHO05D005880 4.5e-132 474.9 313 75.7
Sp5g26990 Schrenkiella parvula HOM05D004678 ORTHO05D005880 5.9e-132 474.6 313 74.4
ATR0152G001 Amborella trichopoda HOM05D004678 ORTHO05D005880 7.7e-132 474.2 309 75.4
A02p17560 Brassica napus HOM05D004678 ORTHO05D005880 1.0e-131 473.8 308 75.6
BraA02t06800Z Brassica rapa HOM05D004678 ORTHO05D005880 1.0e-131 473.8 308 75.6
Gohir.A09G117500 Gossypium hirsutum HOM05D004678 ORTHO05D005880 1.0e-131 473.8 308 74.7
MELO3C023659.2 Cucumis melo HOM05D004678 ORTHO05D005880 1.3e-131 473.4 308 75.3
Hund27082 Selenicereus undatus HOM05D004678 ORTHO05D005880 1.3e-131 473.4 314 74.8
Aa31LG4G8700 Aethionema arabicum HOM05D004678 ORTHO05D005880 1.7e-131 473.0 308 76.0
arahy.Tifrunner.gnm1.ann1.7PLX29 Arachis hypogaea HOM05D004678 ORTHO05D005880 1.7e-131 473.0 308 75.0
Medtr6g033540 Medicago truncatula HOM05D004678 ORTHO05D005880 1.7e-131 473.0 308 75.0
Thhalv10007345m.g Eutrema salsugineum HOM05D004678 ORTHO05D005880 2.2e-131 472.6 313 73.8
ECA236G1055 Erigeron canadensis HOM05D004678 ORTHO05D005880 2.9e-131 472.2 309 75.1
Sabra13G0096400 Salix brachista HOM05D004678 ORTHO05D005880 3.8e-131 471.9 310 74.2
BraA07t31374Z Brassica rapa HOM05D004678 ORTHO05D005880 5.0e-131 471.5 319 72.7
CsaV3_7G024070 Cucumis sativus L. HOM05D004678 ORTHO05D005880 1.1e-130 470.3 308 74.7
Lsat_1_v5_gn_9_80761 Lactuca sativa HOM05D004678 ORTHO05D005880 2.5e-130 469.2 308 75.0
TPR.G36715 Trifolium pratense HOM05D004678 ORTHO05D005880 2.5e-130 469.2 308 75.0
Potri.013G113900 Populus trichocarpa HOM05D004678 ORTHO05D005880 5.5e-130 468.0 309 74.1
Zm00001eb252330 Zea mays HOM05D004678 ORTHO05D005880 5.5e-130 468.0 308 74.0
A07p38090 Brassica napus HOM05D004678 ORTHO05D005880 1.6e-129 466.5 308 74.0
PSO017G6114 Papaver somniferum HOM05D004678 ORTHO05D005880 2.1e-129 466.1 309 74.1
PSO063G1958 Papaver somniferum HOM05D004678 ORTHO05D005880 2.1e-129 466.1 309 74.1
Rhsim09G0073000 Rhododendron simsii HOM05D004678 ORTHO05D005880 2.1e-129 466.1 361 66.8
C06p45990 Brassica napus HOM05D004678 ORTHO05D005880 2.7e-129 465.7 308 74.0
BolC6t39653H Brassica oleracea HOM05D004678 ORTHO05D005880 2.7e-129 465.7 308 74.0
BcaC08g46628 Brassica carinata HOM05D004678 ORTHO05D005880 3.6e-129 465.3 309 73.8
unitig_699.g19496 Utricularia gibba HOM05D004678 ORTHO05D005880 4.7e-129 464.9 313 73.2
Cpa.g.sc36.40 Carica papaya HOM05D004678 ORTHO05D005880 1.4e-128 463.4 307 73.6
CDE04G3296 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 2.3e-128 462.6 309 73.5
Os02g0709200 Oryza sativa ssp. japonica HOM05D004678 ORTHO05D005880 2.3e-128 462.6 309 72.8
BcaC08g46629 Brassica carinata HOM05D004678 ORTHO05D005880 3.0e-128 462.2 313 73.2
Ah.05g178040 Amaranthus hybridus HOM05D004678 ORTHO05D005880 5.2e-128 461.5 371 65.8
Manes.02G191200 Manihot esculenta HOM05D004678 ORTHO05D005880 5.2e-128 461.5 309 73.1
arahy.Tifrunner.gnm1.ann1.57RIKC Arachis hypogaea HOM05D004678 ORTHO05D005880 3.0e-120 435.6 311 70.1
BcaB05g24692 Brassica carinata HOM05D004678 ORTHO05D005880 7.0e-117 424.5 308 69.8
Dinv30099 Davidia involucrata HOM05D004678 ORTHO05D005880 2.7e-116 422.5 270 78.9
Gorai.006G132200 Gossypium raimondii HOM05D004678 ORTHO05D005880 1.9e-114 416.4 269 76.2
Medtr6g033600 Medicago truncatula HOM05D004678 ORTHO05D005880 3.6e-113 412.1 255 79.2
SMO343G0150 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.8e-109 399.8 311 62.4
HPP92_016059 Vanilla planifolia HOM05D004678 ORTHO05D005880 1.2e-108 397.1 269 72.5
Pp3c19_9420 Physcomitrium patens HOM05D004678 ORTHO05D005880 4.6e-108 395.2 308 63.3
Mapoly0007s0122 Marchantia polymorpha HOM05D004678 ORTHO05D005880 1.0e-107 394.0 309 62.8
Cre16.g672385 Chlamydomonas reinhardtii HOM05D004678 ORTHO05D005880 9.8e-103 377.5 310 60.3
TAR629G2521 Trochodendron aralioides HOM05D004678 ORTHO05D005880 7.8e-100 367.9 306 63.1
AagrBONN_evm.TU.Sc2ySwM_362.1592 Anthoceros agrestis HOM05D004678 ORTHO05D005880 9.5e-98 360.9 255 68.2
CDE07G1916 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 3.4e-95 352.4 258 69.4
PRCOL_00004069 Prasinoderma coloniale HOM05D004678 ORTHO05D005880 2.2e-94 349.7 308 56.2
Nn6g34909 Nelumbo nucifera HOM05D004678 ORTHO05D005880 7.1e-93 344.7 309 59.2
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 3.3e-90 335.9 381 50.4
Sed0015109 Sechium edule HOM05D004678 ORTHO05D005880 7.3e-90 334.7 222 73.0
MCO01G265 Micromonas commoda HOM05D004678 ORTHO05D005880 4.4e-87 325.5 314 52.5
MD14G1018500 Malus domestica HOM05D004678 ORTHO05D005880 2.7e-84 316.2 309 56.3
Psat1g098720 Pisum sativum HOM05D004678 ORTHO05D005880 5.8e-79 298.5 218 68.8
HPP92_016095 Vanilla planifolia HOM05D004678 ORTHO05D005880 7.8e-76 288.1 255 59.2
GSVIVG01025260001 Vitis vinifera HOM05D004678 ORTHO05D005880 2.0e-71 273.5 170 78.2
Prupe.8G056800 Prunus persica HOM05D004678 ORTHO05D005880 7.9e-68 261.5 187 69.5
Nitab4.5_0003152g0020 Nicotiana tabacum HOM05D004678 ORTHO05D005880 3.0e-67 259.6 135 92.6
Cfa005301 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.1e-66 257.7 183 69.4
Ca_29915_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 4.3e-66 255.8 174 73.0
Cfa009297 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.1e-64 251.1 179 69.8
DCAR_023441 Daucus carota HOM05D004678 ORTHO05D005880 2.2e-54 216.9 154 72.1
GSVIVG01025261001 Vitis vinifera HOM05D004678 ORTHO05D005880 7.2e-37 158.7 120 64.2
SHI09055 Sapria himalayana HOM05D004678 ORTHO05D005880 2.0e-31 140.6 90 72.2
Psat0s2699g0120 Pisum sativum HOM05D004678 ORTHO05D005880 3.6e-28 129.8 77 79.2
Cfa024628 Carpinus fangiana HOM05D004678 ORTHO05D005880 2.3e-27 127.1 287 32.1
Solyc11g040030.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 3.3e-26 123.2 66 89.4
SMO343G0161 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.2e-23 114.8 141 44.7
SHI09056 Sapria himalayana HOM05D004678 ORTHO05D005880 1.6e-23 114.4 106 57.5
CBR_g40358 Chara braunii HOM05D000019 ORTHO05D000048 5.9e-23 112.5 85 61.2
MBI17_g38771_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 2.7e-20 103.6 78 65.4
MBI17_g42088_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 2.7e-20 103.6 78 65.4
CAN.G137.23 Capsicum annuum HOM05D004678 ORTHO05D000493 3.3e-18 96.7 168 38.7
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 6.3e-17 92.4 60 76.7
SMO367G0035 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 2.0e-15 87.4 79 55.7
PGSC0003DMG400008416 Solanum tuberosum HOM05D004678 ORTHO05D005880 4.5e-15 86.3 71 60.6
SMO035G0001 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 5.5e-13 79.3 106 50.0
Lsat_1_v5_gn_7_11140 Lactuca sativa HOM05D002771 ORTHO05D003078 2.3e-11 73.9 255 27.8
Pp3s32_480 Physcomitrium patens HOM05D003605 ORTHO05D309393 9.8e-10 68.6 185 28.1
PRCOL_00006728 Prasinoderma coloniale HOM05D004678 ORTHO05D333305 2.2e-09 67.4 308 25.6
Lalb_Chr21g0309431 Lupinus albus HOM05D002771 ORTHO05D003078 2.8e-09 67.0 227 25.6
Eucgr.F04444 Eucalyptus grandis HOM05D002771 ORTHO05D003078 4.8e-09 66.2 255 23.1
Eucgr.F04446 Eucalyptus grandis HOM05D002771 ORTHO05D003078 4.8e-09 66.2 255 23.1
COL.COLO4_19765 Corchorus olitorius HOM05D004678 ORTHO05D005880 6.3e-09 65.9 35 74.3
CsaV3_7G029770 Cucumis sativus L. HOM05D002771 ORTHO05D003078 6.3e-09 65.9 253 24.5
CBR_g36553 Chara braunii HOM05D003605 ORTHO05D003078 8.3e-09 65.5 146 32.2
Pp3s46_180 Physcomitrium patens HOM05D002465 ORTHO05D028651 9.1e-08 62.0 179 26.8
Gorai.007G024400 Gossypium raimondii HOM05D000418 ORTHO05D000317 3.5e-07 60.1 284 23.2
Manes.01G225000 Manihot esculenta HOM05D002771 ORTHO05D003078 3.5e-07 60.1 258 24.0
Potri.014G124100 Populus trichocarpa HOM05D002771 ORTHO05D003078 3.5e-07 60.1 260 23.5
Aa31LG8G17510 Aethionema arabicum HOM05D000658 ORTHO05D000826 4.5e-07 59.7 196 29.6
Gohir.A11G023000 Gossypium hirsutum HOM05D000418 ORTHO05D000317 4.5e-07 59.7 284 23.2
ECA236G0232 Erigeron canadensis HOM05D002771 ORTHO05D003078 5.9e-07 59.3 257 25.7
CiPaw.03G138800 Carya illinoinensis HOM05D003605 ORTHO05D004292 1.0e-06 58.5 186 28.0
PGSC0003DMG400021651 Solanum tuberosum HOM05D000418 ORTHO05D000317 1.7e-06 57.8 156 28.2
MELO3C015944.2 Cucumis melo HOM05D002771 ORTHO05D003078 2.9e-06 57.0 196 26.0
Nitab4.5_0001520g0040 Nicotiana tabacum HOM05D004678 ORTHO05D012214 8.6e-06 55.5 29 86.2


User provided reference genes

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