Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 2.1e-247 858.6 438 100.0
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 7.9e-247 856.7 438 99.8
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 7.0e-243 843.6 439 98.4
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 1.7e-220 769.2 442 88.9
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 3.1e-219 765.0 442 89.1
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 1.7e-204 716.1 444 83.6
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 2.2e-204 715.7 441 83.0
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 3.2e-203 711.8 440 84.5
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 7.0e-203 710.7 441 83.2
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 3.5e-202 708.4 442 83.5
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 7.8e-202 707.2 440 82.5
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 7.8e-202 707.2 440 82.5
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.7e-201 706.1 444 82.2
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 3.0e-201 705.3 444 82.4
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 3.0e-201 705.3 443 83.3
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 6.6e-201 704.1 439 83.4
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 1.1e-200 703.4 446 82.5
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 1.5e-200 703.0 443 83.3
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.5e-200 703.0 447 82.1
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 3.3e-200 701.8 440 81.4
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 7.3e-200 700.7 443 81.7
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 9.5e-200 700.3 444 81.8
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 9.5e-200 700.3 445 81.6
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 3.6e-199 698.4 440 81.8
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 4.7e-199 698.0 438 82.6
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 4.7e-199 698.0 442 81.7
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 3.1e-198 695.3 442 81.9
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 3.1e-198 695.3 443 81.9
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 3.1e-198 695.3 399 87.5
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 4.0e-198 694.9 443 81.0
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 4.0e-198 694.9 418 85.6
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 4.0e-198 694.9 443 82.4
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 6.8e-198 694.1 424 83.5
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 6.8e-198 694.1 440 81.6
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 1.2e-197 693.3 442 81.0
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 1.5e-197 693.0 443 81.9
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 1.5e-197 693.0 438 82.4
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.5e-197 693.0 441 82.1
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 4.4e-197 691.4 440 83.0
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 5.8e-197 691.0 440 81.6
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 9.8e-197 690.3 440 80.5
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.3e-196 689.9 440 82.5
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 1.3e-196 689.9 398 86.9
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 1.7e-196 689.5 443 81.5
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 2.2e-196 689.1 440 82.5
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 2.2e-196 689.1 444 82.2
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 2.9e-196 688.7 440 82.3
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 4.9e-196 688.0 447 80.8
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 4.9e-196 688.0 440 80.2
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 8.3e-196 687.2 436 81.9
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 4.1e-195 684.9 439 80.4
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 5.4e-195 684.5 437 80.3
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 7.0e-195 684.1 443 81.5
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 7.0e-195 684.1 443 81.0
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.2e-194 683.3 418 84.0
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 1.6e-194 682.9 440 80.2
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 1.6e-194 682.9 440 80.2
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 2.1e-194 682.6 438 80.8
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 2.7e-194 682.2 440 80.5
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.5e-194 681.8 440 80.0
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 4.6e-194 681.4 444 81.3
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 7.8e-194 680.6 442 80.3
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 1.0e-193 680.2 444 79.5
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.7e-193 679.5 440 79.8
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 3.0e-193 678.7 437 79.6
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 1.1e-192 676.8 441 79.8
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 1.5e-192 676.4 439 80.6
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 1.9e-192 676.0 444 80.4
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 2.5e-192 675.6 399 85.0
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 2.1e-191 672.5 439 80.0
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 3.6e-191 671.8 440 79.3
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 3.6e-191 671.8 437 79.2
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 4.7e-191 671.4 441 78.5
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 6.2e-191 671.0 443 79.5
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 8.1e-191 670.6 443 79.2
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 1.1e-190 670.2 448 79.5
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 1.4e-190 669.8 439 80.0
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 6.8e-190 667.5 438 79.9
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 1.2e-189 666.8 441 77.6
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 4.4e-189 664.8 438 79.9
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 5.8e-189 664.5 440 78.4
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 5.8e-189 664.5 444 80.0
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 7.5e-189 664.1 396 84.3
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.7e-188 662.9 396 84.1
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 2.2e-188 662.5 439 79.0
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 6.4e-188 661.0 440 79.3
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 1.9e-187 659.4 441 79.1
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 1.9e-187 659.4 442 78.5
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 5.4e-187 657.9 439 78.6
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 1.2e-186 656.8 441 78.7
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 1.2e-186 656.8 441 78.7
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 4.6e-186 654.8 437 78.5
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 6.0e-186 654.4 438 78.3
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 1.3e-185 653.3 416 81.5
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 1.3e-185 653.3 401 82.5
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 2.3e-185 652.5 438 78.3
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 2.3e-185 652.5 438 78.3
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 3.9e-185 651.7 437 78.0
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 5.1e-185 651.4 440 78.0
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 1.1e-184 650.2 417 80.6
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 3.3e-184 648.7 417 80.1
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 3.3e-184 648.7 417 80.1
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 4.3e-184 648.3 436 77.1
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 1.1e-182 643.7 437 77.6
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 2.4e-182 642.5 386 82.6
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 4.0e-182 641.7 437 77.1
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 2.0e-181 639.4 416 79.6
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 2.0e-181 639.4 416 79.6
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 5.8e-181 637.9 413 78.9
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 9.9e-181 637.1 380 83.2
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 2.9e-180 635.6 398 80.4
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.4e-179 633.3 388 83.2
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.4e-179 633.3 421 77.2
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 2.1e-178 629.4 419 75.9
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 2.7e-178 629.0 481 70.5
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 2.3e-177 625.9 423 76.1
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 3.0e-177 625.5 383 81.5
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 1.1e-174 617.1 380 82.1
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 4.9e-172 608.2 491 66.6
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 9.3e-171 604.0 438 74.2
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 5.1e-169 598.2 383 82.2
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 2.7e-162 575.9 365 83.0
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 2.7e-154 549.3 368 78.5
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 4.3e-152 542.0 307 89.6
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 3.7e-151 538.9 382 69.6
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 2.4e-150 536.2 394 69.3
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 7.6e-149 531.2 358 77.7
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 1.0e-148 530.8 410 64.1
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 9.3e-147 524.2 365 69.6
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.1e-144 517.3 364 69.2
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 1.4e-142 510.4 364 67.0
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 3.1e-142 509.2 436 62.2
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 3.4e-141 505.8 376 66.0
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 4.5e-141 505.4 361 70.9
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 5.9e-141 505.0 390 66.7
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.7e-140 503.4 377 67.4
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.2e-140 503.1 377 67.4
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 2.9e-140 502.7 396 66.7
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 3.9e-137 492.3 404 62.9
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 6.3e-135 485.0 396 60.4
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 5.5e-131 471.9 396 59.6
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 2.1e-130 469.9 360 64.4
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 3.6e-130 469.2 317 77.3
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 1.9e-115 420.2 365 60.8
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 3.0e-97 359.8 366 54.4
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 5.9e-93 345.5 302 61.9
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 1.5e-83 314.3 225 72.4
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 7.8e-69 265.4 186 76.9
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.0e-68 265.0 328 44.2
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.5e-59 234.6 139 86.3
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 7.3e-59 232.3 123 88.6
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 6.9e-57 225.7 199 58.8
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 1.5e-56 224.6 154 72.7
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 2.9e-39 167.2 162 54.3
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 4.6e-37 159.8 119 68.9
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 4.3e-35 153.3 111 74.8
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 3.4e-32 143.7 81 87.7
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 6.5e-31 139.4 82 85.4
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 5.1e-28 129.8 80 72.5
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 5.1e-28 129.8 100 62.0
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 3.9e-20 103.6 74 63.5
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 3.7e-18 97.1 51 84.3
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 3.4e-16 90.5 94 51.1
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 3.5e-08 63.9 35 85.7


User provided reference genes

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