Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 2137.1 1117 100.0
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 2128.2 1117 99.5
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1950.6 1121 90.5
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1799.6 1131 81.2
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1781.9 1124 80.4
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1773.4 1132 79.0
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1768.1 1134 79.5
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1766.1 1128 79.2
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1761.5 1126 79.6
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1753.0 1128 79.3
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1753.0 1141 79.1
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1751.1 1126 78.7
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1749.9 1130 77.7
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1744.6 1136 77.7
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1741.1 1135 78.0
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1739.5 1137 77.3
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1736.9 1130 78.0
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1734.5 1138 77.3
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1729.9 1129 78.0
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1729.5 1135 77.9
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1728.8 1134 78.3
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1728.4 1131 76.8
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1723.8 1128 77.5
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1721.1 1133 77.3
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1721.1 1127 77.6
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1718.0 1138 76.5
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1716.0 1124 76.6
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1715.3 1124 76.6
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1714.1 1128 76.7
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1713.4 1127 76.8
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1713.0 1124 76.9
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1712.2 1124 76.4
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1711.4 1124 76.6
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1710.3 1124 76.2
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1708.7 1133 77.0
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1705.3 1120 76.6
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1703.7 1127 77.6
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1703.7 1131 76.0
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1703.3 1132 76.1
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1699.5 1127 77.3
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1697.9 1118 75.7
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1696.8 1126 76.6
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1692.9 1130 76.3
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1691.4 1125 76.7
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1687.5 1137 75.8
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1681.8 1135 75.8
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1679.8 1119 76.9
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1678.7 1178 73.9
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1676.0 1136 76.2
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1669.4 1128 75.0
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1666.7 1138 75.2
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1666.4 1101 76.5
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1654.8 1126 74.5
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1641.7 1124 74.6
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1633.2 1126 73.7
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1625.1 1136 71.9
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1624.0 1130 72.9
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1620.9 1124 73.2
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1615.9 1122 73.6
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1606.7 1122 73.4
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1587.4 1129 70.9
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1584.3 1138 70.2
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1582.4 1131 72.0
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1580.8 1119 71.8
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1577.8 1124 71.5
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1573.1 1068 74.3
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1567.4 1148 70.4
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1567.4 1148 70.4
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1565.1 1136 69.5
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1562.7 1136 69.3
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1561.2 1131 69.5
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1555.8 1120 70.5
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1555.8 1028 76.7
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1555.4 1128 70.7
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1554.3 1127 69.0
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1551.2 1136 68.9
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1550.8 1010 78.9
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1550.4 1136 69.1
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1546.9 1131 69.2
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1546.6 1121 70.6
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1545.8 1132 69.2
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1543.9 1132 69.1
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1542.3 1138 69.2
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1541.2 1132 69.0
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1538.5 1132 69.2
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1532.7 1093 71.4
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1532.7 1122 68.6
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1522.7 1123 68.0
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1521.1 1122 67.9
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1520.8 1123 67.9
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1516.1 1122 67.7
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1502.6 1078 70.8
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1495.3 1071 71.7
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1484.5 1033 72.3
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1479.9 922 80.5
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1451.8 922 79.4
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1443.3 1123 67.2
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1419.8 1122 65.4
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1403.7 1145 63.9
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1390.6 1093 66.9
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1376.7 1118 63.5
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1346.3 1105 61.9
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1319.7 1120 59.9
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1314.3 894 73.0
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1311.2 883 74.1
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1243.4 821 78.3
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1154.4 925 64.9
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1149.8 783 75.5
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 1088.2 1072 52.3
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 7.6e-312 1073.5 1088 49.6
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 8.6e-306 1053.9 599 91.2
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 7.3e-305 1050.8 670 79.1
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 1.8e-303 1046.2 760 69.1
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 6.0e-299 1031.2 1073 49.5
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 9.0e-295 1017.3 1066 50.5
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 2.6e-249 866.3 927 53.0
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 1.2e-219 767.7 1096 41.1
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 2.0e-217 760.4 614 63.0
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 3.8e-168 596.7 421 74.6
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 2.7e-158 563.9 366 74.9
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 5.0e-144 516.5 436 65.8
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 1.1e-122 445.7 355 62.8
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 2.5e-103 381.3 314 65.6
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 2.8e-94 351.3 314 61.1
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 8.0e-94 349.7 1186 27.2
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 1.3e-88 332.4 335 60.3
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 3.1e-85 321.2 1142 27.6
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 6.4e-83 313.5 365 47.9
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 1.2e-70 272.7 333 48.6
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 6.4e-67 260.4 322 51.6
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 2.5e-39 168.7 149 66.4
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 2.2e-35 155.6 100 81.0
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 1.3e-32 146.4 644 22.4
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 3.1e-29 135.2 111 71.2
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 2.0e-28 132.5 86 81.4
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 2.2e-27 129.0 86 79.1
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 5.1e-24 117.9 69 75.4
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 1.5e-23 116.3 68 75.0
RcHm_v2.0_Chr0c29g0501111 Rosa chinensis HOM05D005483 ORTHO05D000581 4.4e-07 61.6 45 75.6
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 8.2e-06 57.4 79 51.9


User provided reference genes

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