Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g015510 Solanum pennellii HOM05D000002 ORTHO05D000001 5.3e-47 190.7 94 100.0
Sopen02g005350 Solanum pennellii HOM05D000002 ORTHO05D000001 2.1e-40 168.7 93 87.1
Sopen01g025280 Solanum pennellii HOM05D000002 ORTHO05D000001 2.8e-40 168.3 93 87.1
Sopen05g020560 Solanum pennellii HOM05D000002 ORTHO05D000001 8.1e-40 166.8 93 87.1
Sopen08g020550 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-39 166.4 93 87.1
Sopen01g009970 Solanum pennellii HOM05D000002 ORTHO05D000001 5.8e-38 160.6 93 83.9
Sopen11g017730 Solanum pennellii HOM05D000006 ORTHO05D000001 6.4e-37 157.1 93 80.6
Sopen10g013730 Solanum pennellii HOM05D000006 ORTHO05D000001 8.4e-37 156.8 93 83.9
Sopen01g012990 Solanum pennellii HOM05D000002 ORTHO05D000001 2.4e-36 155.2 93 81.7
Sopen04g014610 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-35 152.5 93 80.6
Sopen11g021720 Solanum pennellii HOM05D000002 ORTHO05D000001 2.5e-33 145.2 93 76.3
Sopen04g014730 Solanum pennellii HOM05D000002 ORTHO05D000001 7.6e-30 133.7 69 91.3
Sopen01g020410 Solanum pennellii HOM05D006383 ORTHO05D007815 2.5e-28 128.6 79 82.3
Sopen10g006280 Solanum pennellii HOM05D000002 ORTHO05D000001 2.1e-24 115.5 68 85.3
Sopen08g006260 Solanum pennellii HOM05D000006 ORTHO05D000001 6.2e-24 114.0 68 83.8
Duzib170G0368 Durio zibethinus HOM05D000002 ORTHO05D000001 3.8e-21 104.8 93 50.5
Duzib212G0395 Durio zibethinus HOM05D000002 ORTHO05D000001 4.9e-21 104.4 93 49.5
Duzib128G0886 Durio zibethinus HOM05D000002 ORTHO05D000001 6.5e-21 104.0 93 50.5
Duzib041G0290 Durio zibethinus HOM05D000002 ORTHO05D000001 7.1e-20 100.5 93 48.4
Duzib170G0347 Durio zibethinus HOM05D000002 ORTHO05D000001 7.1e-20 100.5 93 48.4
Duzib213G0091 Durio zibethinus HOM05D000002 ORTHO05D000001 1.0e-18 96.7 93 46.2
Gorai.005G117400 Gossypium raimondii HOM05D000002 ORTHO05D000001 1.3e-18 96.3 94 46.8
Duzib084G1319 Durio zibethinus HOM05D000002 ORTHO05D000001 3.9e-18 94.7 93 47.3
Duzib211G0111 Durio zibethinus HOM05D000002 ORTHO05D000001 9.7e-17 90.1 83 49.4
Duzib138G1479 Durio zibethinus HOM05D000002 ORTHO05D000001 2.8e-16 88.6 83 49.4
Sopen02g010710 Solanum pennellii HOM05D000002 ORTHO05D000001 6.3e-16 87.4 83 48.2
CsaV3_5G024630 Cucumis sativus L. HOM05D000002 ORTHO05D000001 1.1e-15 86.7 91 41.8
Eucgr.F01722 Eucalyptus grandis HOM05D000002 ORTHO05D000001 1.1e-15 86.7 80 48.8
PGR142G1863 Punica granatum HOM05D000002 ORTHO05D000001 1.4e-15 86.3 83 50.6
Eucgr.C03626 Eucalyptus grandis HOM05D000002 ORTHO05D000001 1.8e-15 85.9 80 50.0
Eucgr.H05143 Eucalyptus grandis HOM05D000002 ORTHO05D000001 1.8e-15 85.9 80 50.0
Psat7g185520 Pisum sativum HOM05D000002 ORTHO05D000001 1.8e-15 85.9 83 45.8
Eucgr.B00919 Eucalyptus grandis HOM05D000002 ORTHO05D000001 2.4e-15 85.5 79 49.4
Eucgr.C03386 Eucalyptus grandis HOM05D000002 ORTHO05D000001 2.4e-15 85.5 80 50.0
Eucgr.L01126 Eucalyptus grandis HOM05D000002 ORTHO05D000001 3.1e-15 85.1 80 51.2
PGR129G0010 Punica granatum HOM05D000002 ORTHO05D000001 4.1e-15 84.7 83 49.4
Eucgr.E01889 Eucalyptus grandis HOM05D000002 ORTHO05D000001 5.3e-15 84.3 80 51.2
PGR004G1580 Punica granatum HOM05D000002 ORTHO05D000001 5.3e-15 84.3 83 48.2
Eucgr.C04364 Eucalyptus grandis HOM05D000002 ORTHO05D000001 6.9e-15 84.0 80 46.2
THA.LOC104801877 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 6.9e-15 84.0 87 44.8
CSS0037302 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.0e-15 83.6 92 42.4
Eucgr.C02657 Eucalyptus grandis HOM05D000002 ORTHO05D000001 9.0e-15 83.6 83 44.6
Eucgr.C02847 Eucalyptus grandis HOM05D000002 ORTHO05D000001 9.0e-15 83.6 79 49.4
Eucgr.K03052 Eucalyptus grandis HOM05D000002 ORTHO05D000001 1.5e-14 82.8 80 48.8
Eucgr.H01309 Eucalyptus grandis HOM05D000002 ORTHO05D000001 2.0e-14 82.4 80 48.8
Eucgr.I00145 Eucalyptus grandis HOM05D000002 ORTHO05D000001 2.0e-14 82.4 80 47.5
PGR102G0886 Punica granatum HOM05D000002 ORTHO05D000001 2.0e-14 82.4 83 45.8
Eucgr.F00519 Eucalyptus grandis HOM05D000002 ORTHO05D000001 2.6e-14 82.0 83 45.8
Eucgr.L03606 Eucalyptus grandis HOM05D000002 ORTHO05D000001 3.4e-14 81.6 83 44.6
CAN.G1337.33 Capsicum annuum HOM05D001608 ORTHO05D002070 4.5e-14 81.3 83 44.6
Eucgr.G01578 Eucalyptus grandis HOM05D000002 ORTHO05D000001 4.5e-14 81.3 80 45.0
Manes.10G049666 Manihot esculenta HOM05D000002 ORTHO05D000001 5.9e-14 80.9 93 41.9
Eucgr.D00207 Eucalyptus grandis HOM05D000002 ORTHO05D000001 7.7e-14 80.5 83 44.6
Eucgr.K03232 Eucalyptus grandis HOM05D000002 ORTHO05D000001 7.7e-14 80.5 83 42.2
Gorai.011G263500 Gossypium raimondii HOM05D000092 ORTHO05D000042 7.7e-14 80.5 82 45.1
Atru.chr10.209 Acer truncatum HOM05D000002 ORTHO05D000001 1.0e-13 80.1 80 45.0
THA.LOC109116397 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 1.0e-13 80.1 93 44.1
Eucgr.C00972 Eucalyptus grandis HOM05D000002 ORTHO05D000001 1.3e-13 79.7 80 47.5
CAN.G1090.20 Capsicum annuum HOM05D000002 ORTHO05D000001 1.7e-13 79.3 93 39.8
Lj3g0008931 Lotus japonicus HOM05D000002 ORTHO05D000001 2.9e-13 78.6 80 41.2
Thecc.05G264300 Theobroma cacao HOM05D000002 ORTHO05D000001 2.9e-13 78.6 86 41.9
PGR142G1019 Punica granatum HOM05D000002 ORTHO05D000001 3.8e-13 78.2 91 41.8
PGSC0003DMG400016677 Solanum tuberosum HOM05D000002 ORTHO05D000001 3.8e-13 78.2 92 42.4
THA.LOC104806972 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 3.8e-13 78.2 83 45.8
GSVIVG01015124001 Vitis vinifera HOM05D000844 ORTHO05D000680 3.8e-13 78.2 84 44.0
THA.LOC104800423 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 6.5e-13 77.4 80 43.8
THA.LOC104825922 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 6.5e-13 77.4 80 42.5
THA.LOC109116421 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 6.5e-13 77.4 80 42.5
Sopen09g027810 Solanum pennellii HOM05D000002 ORTHO05D000001 8.5e-13 77.0 92 37.0
CSS0002307 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-12 76.3 90 40.0
PGR119G1744 Punica granatum HOM05D000002 ORTHO05D000001 1.9e-12 75.9 92 39.1
CAN.G22.52 Capsicum annuum HOM05D000121 ORTHO05D012651 2.5e-12 75.5 67 50.7
Eucgr.H04178 Eucalyptus grandis HOM05D000002 ORTHO05D000001 2.5e-12 75.5 80 43.8
THA.LOC104799859 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 2.5e-12 75.5 93 41.9
THA.LOC104804916 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 2.5e-12 75.5 86 43.0
THA.LOC104808467 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 2.5e-12 75.5 86 43.0
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 3.2e-12 75.1 81 42.0
PGR042G1475 Punica granatum HOM05D000002 ORTHO05D000001 3.2e-12 75.1 91 38.5
CAN.G339.2 Capsicum annuum HOM05D000073 ORTHO05D011077 5.5e-12 74.3 83 41.0
Psat5g268360 Pisum sativum HOM05D000002 ORTHO05D000001 5.5e-12 74.3 86 44.2
THA.LOC104801932 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 5.5e-12 74.3 84 44.0
THA.LOC104821175 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 5.5e-12 74.3 84 44.0
PGR083G2178 Punica granatum HOM05D000002 ORTHO05D000001 7.2e-12 73.9 86 40.7
THA.LOC104798816 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 9.4e-12 73.6 84 42.9
CSS0000291 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-11 73.2 92 37.0
Hma1.2p1_0243F.1_g100950 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-11 73.2 91 40.7
THA.LOC104815425 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 1.2e-11 73.2 85 41.2
CAN.G694.52 Capsicum annuum HOM05D000264 ORTHO05D000152 2.1e-11 72.4 85 40.0
Manes.11G110350 Manihot esculenta HOM05D000002 ORTHO05D000001 2.1e-11 72.4 80 42.5
PGR142G1959 Punica granatum HOM05D000002 ORTHO05D000001 2.1e-11 72.4 83 43.4
Duzib114G0941 Durio zibethinus HOM05D000002 ORTHO05D000001 2.7e-11 72.0 68 48.5
TWI14G0389 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 2.7e-11 72.0 82 39.0
CAN.G1744.9 Capsicum annuum HOM05D000011 ORTHO05D001721 4.6e-11 71.2 62 48.4
Atru.chr4.412 Acer truncatum HOM05D000002 ORTHO05D000001 7.9e-11 70.5 87 36.8
PGR102G3201 Punica granatum HOM05D000002 ORTHO05D000001 1.0e-10 70.1 91 36.3
Sopen09g018460 Solanum pennellii HOM05D000006 ORTHO05D000001 1.4e-10 69.7 66 51.5
PGSC0003DMG400006637 Solanum tuberosum HOM05D000002 ORTHO05D000001 1.8e-10 69.3 67 44.8
PGR031G0477 Punica granatum HOM05D000002 ORTHO05D000001 5.1e-10 67.8 68 45.6
Thecc.10G160200 Theobroma cacao HOM05D000002 ORTHO05D000001 1.1e-09 66.6 80 40.0
TWI79G0963 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 1.1e-09 66.6 93 33.3
CSS0008377 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-09 66.2 84 42.9
CAN.G286.1 Capsicum annuum HOM05D000071 ORTHO05D000029 2.0e-09 65.9 74 37.8
THA.LOC104804703 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 2.0e-09 65.9 80 40.0
PGR042G1924 Punica granatum HOM05D000002 ORTHO05D000001 2.5e-09 65.5 83 42.2
Sopen01g011900 Solanum pennellii HOM05D000002 ORTHO05D000001 2.5e-09 65.5 81 42.0
GSVIVG01034745001 Vitis vinifera HOM05D000103 ORTHO05D000049 2.5e-09 65.5 80 38.8
Atru.chr2.3414 Acer truncatum HOM05D000002 ORTHO05D000001 4.3e-09 64.7 80 40.0
Duzib168G2179 Durio zibethinus HOM05D000002 ORTHO05D000001 4.3e-09 64.7 68 47.1
Eucgr.G00256 Eucalyptus grandis HOM05D000002 ORTHO05D000001 5.7e-09 64.3 68 48.5
GSVIVG01011363001 Vitis vinifera HOM05D002216 ORTHO05D002011 5.7e-09 64.3 82 34.1
CSS0031737 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.4e-09 63.9 68 45.6
CSS0040477 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.4e-09 63.9 68 45.6
Thecc.07G129500 Theobroma cacao HOM05D002630 ORTHO05D000952 7.4e-09 63.9 92 41.3
Eucgr.F00853 Eucalyptus grandis HOM05D000002 ORTHO05D000001 9.7e-09 63.5 68 45.6
Eucgr.L01985 Eucalyptus grandis HOM05D000002 ORTHO05D000001 9.7e-09 63.5 68 47.1
Thecc.04G138600 Theobroma cacao HOM05D000006 ORTHO05D000001 9.7e-09 63.5 76 42.1
CAN.G279.27 Capsicum annuum HOM05D000007 ORTHO05D000017 1.3e-08 63.2 77 35.1
PGR102G0819 Punica granatum HOM05D000002 ORTHO05D000001 1.3e-08 63.2 83 36.1
GSVIVG01037631001 Vitis vinifera HOM05D000092 ORTHO05D000042 1.3e-08 63.2 77 35.1
TWI09G1183 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 1.7e-08 62.8 90 33.3
EL10Ac9g21265 Beta vulgaris HOM05D000002 ORTHO05D000001 2.2e-08 62.4 68 41.2
Eucgr.C03442 Eucalyptus grandis HOM05D000002 ORTHO05D000001 2.8e-08 62.0 68 42.6
PGR102G0612 Punica granatum HOM05D000002 ORTHO05D000001 2.8e-08 62.0 61 45.9
Atru.chr1.1850 Acer truncatum HOM05D000002 ORTHO05D000001 4.8e-08 61.2 68 42.6
GSVIVG01000436001 Vitis vinifera HOM05D000002 ORTHO05D000001 4.8e-08 61.2 80 38.8
EL10Ac4g09273 Beta vulgaris HOM05D000002 ORTHO05D000001 6.3e-08 60.8 68 39.7
PGR004G1597 Punica granatum HOM05D000002 ORTHO05D000001 6.3e-08 60.8 73 42.5
Eucgr.E01470 Eucalyptus grandis HOM05D000002 ORTHO05D000001 1.1e-07 60.1 68 47.1
VMungo1383G3675 Vigna mungo HOM05D005458 ORTHO05D000001 1.1e-07 60.1 78 37.2
Duzib106G0529 Durio zibethinus HOM05D000002 ORTHO05D000001 1.4e-07 59.7 68 42.6
PGR031G2479 Punica granatum HOM05D000002 ORTHO05D000001 1.4e-07 59.7 68 42.6
Sopen05g025270 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-07 59.7 94 33.0
PGSC0003DMG400013513 Solanum tuberosum HOM05D000002 ORTHO05D000001 1.4e-07 59.7 68 35.3
CAN.G1090.34 Capsicum annuum HOM05D000011 ORTHO05D016870 1.8e-07 59.3 68 38.2
Duzib187G1208 Durio zibethinus HOM05D000002 ORTHO05D000001 2.4e-07 58.9 57 49.1
TWI15G1219 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 2.4e-07 58.9 91 31.9
TWI31G0090 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 2.4e-07 58.9 91 30.8
Sopen04g023280 Solanum pennellii HOM05D000006 ORTHO05D000001 4.1e-07 58.2 40 72.5
VMungo1127G0211 Vigna mungo HOM05D000013 ORTHO05D000011 4.1e-07 58.2 70 40.0
Gohir.D11G325300 Gossypium hirsutum HOM05D000092 ORTHO05D000042 5.3e-07 57.8 69 37.7
PGR044G0488 Punica granatum HOM05D000002 ORTHO05D000001 6.9e-07 57.4 57 43.9
CAN.G756.46 Capsicum annuum HOM05D000002 ORTHO05D000001 9.1e-07 57.0 68 38.2
TPR.G29800 Trifolium pratense HOM05D000034 ORTHO05D000037 1.2e-06 56.6 62 37.1
Gohir.D01G075050 Gossypium hirsutum HOM05D000002 ORTHO05D000001 2.6e-06 55.5 93 31.2
arahy.Tifrunner.gnm1.ann1.8W4KUS Arachis hypogaea HOM05D000097 ORTHO05D000041 3.4e-06 55.1 93 34.4
arahy.Tifrunner.gnm1.ann1.NKKF6S Arachis hypogaea HOM05D000097 ORTHO05D000041 3.4e-06 55.1 93 34.4
Eucgr.H01934 Eucalyptus grandis HOM05D000002 ORTHO05D000001 3.4e-06 55.1 68 42.6
PGSC0003DMG400044287 Solanum tuberosum HOM05D000002 ORTHO05D000001 3.4e-06 55.1 68 35.3
RcHm_v2.0_Chr5g0080061 Rosa chinensis HOM05D000002 ORTHO05D000001 4.5e-06 54.7 80 33.8


User provided reference genes

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