Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g014320 Solanum pennellii HOM05D005210 ORTHO05D010286 3.9e-159 564.7 276 100.0
CAN.G85.24 Capsicum annuum HOM05D005210 ORTHO05D010286 6.0e-51 205.3 156 68.6
Lj2P1229T95 Lonicera japonica HOM05D005210 ORTHO05D010286 3.6e-43 179.5 99 87.9
Solyc00g025290.1 Solanum lycopersicum HOM05D005210 ORTHO05D010286 6.1e-43 178.7 99 87.9
PGSC0003DMG400041193 Solanum tuberosum HOM05D005210 ORTHO05D010286 6.1e-43 178.7 99 87.9
arahy.Tifrunner.gnm1.ann1.QPLA3G Arachis hypogaea HOM05D005210 ORTHO05D010080 1.4e-42 177.6 99 86.9
Hma1.2p1_0066F.1_g036150 Hydrangea macrophylla HOM05D005210 ORTHO05D010286 6.7e-42 175.3 99 85.9
Dinv06682 Davidia involucrata HOM05D005210 ORTHO05D010080 1.5e-41 174.1 99 84.8
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 5.7e-41 172.2 99 84.8
EL10Ac6g14456 Beta vulgaris HOM05D005210 ORTHO05D010286 1.3e-40 171.0 187 54.0
Actinidia34888 Actinidia chinensis HOM05D005210 ORTHO05D010080 3.7e-40 169.5 99 83.8
Nitab4.5_0007225g0020 Nicotiana tabacum HOM05D005210 ORTHO05D010286 4.1e-39 166.0 99 81.8
AUR62042343 Chenopodium quinoa HOM05D005210 ORTHO05D010286 5.3e-39 165.6 187 53.5
SalBow1G3053 Salvia bowleyana HOM05D005210 ORTHO05D010286 1.2e-38 164.5 99 82.8
Ah.10g028400 Amaranthus hybridus HOM05D005210 ORTHO05D010286 2.0e-38 163.7 99 78.8
AUR62043906 Chenopodium quinoa HOM05D005210 ORTHO05D010286 2.0e-38 163.7 99 79.8
SabraMtG0001200 Salix brachista HOM05D005210 ORTHO05D010286 3.4e-38 162.9 99 81.8
RcHm_v2.0_Chr7g0235961 Rosa chinensis HOM05D005210 ORTHO05D010286 1.0e-37 161.4 91 85.7
RcHm_v2.0_MTg0499091 Rosa chinensis HOM05D005210 ORTHO05D010286 1.0e-37 161.4 91 85.7
ClCG09G013030 Citrullus lanatus HOM05D005210 ORTHO05D010286 1.7e-37 160.6 99 78.8
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 5.0e-37 159.1 91 83.5
CAN.G1.5 Capsicum annuum HOM05D005210 ORTHO05D010286 1.1e-36 157.9 99 80.8
FAN17G0417 Fragaria x ananassa HOM05D005210 ORTHO05D010286 1.8e-31 140.6 130 58.5
Oeu002130.1 Olea europaea HOM05D005210 ORTHO05D010286 1.5e-30 137.5 114 64.9
Peaxi162Scf00489g00022 Petunia axillaris HOM05D005210 ORTHO05D011782 2.7e-27 126.7 73 82.2
arahy.Tifrunner.gnm1.ann1.2DSY3L Arachis hypogaea HOM05D005210 ORTHO05D010286 6.1e-27 125.6 65 92.3
ECA039G0011 Erigeron canadensis HOM05D005210 ORTHO05D010286 1.0e-26 124.8 105 68.6
Lsat_1_v5_gn_2_41741 Lactuca sativa HOM05D005210 ORTHO05D010286 1.0e-26 124.8 105 68.6
Lsat_1_v5_gn_6_2961 Lactuca sativa HOM05D005210 ORTHO05D010286 1.0e-26 124.8 105 68.6
Lsat_1_v5_gn_0_34981 Lactuca sativa HOM05D005210 ORTHO05D010286 3.0e-26 123.2 107 67.3
Solyc08g036537.1 Solanum lycopersicum HOM05D005210 ORTHO05D010286 4.4e-25 119.4 69 84.1
Lsat_1_v5_gn_5_16200 Lactuca sativa HOM05D005210 ORTHO05D010286 5.7e-25 119.0 105 65.7
LjContig00439g0018526 Lotus japonicus HOM05D005210 ORTHO05D010286 3.1e-23 113.2 103 66.0
Lsat_1_v5_gn_5_16401 Lactuca sativa HOM05D005210 ORTHO05D010286 4.1e-23 112.8 101 64.4
TPR.G28261 Trifolium pratense HOM05D005210 ORTHO05D010286 2.0e-22 110.5 65 83.1
Glyma.12G155200 Glycine max HOM05D005210 ORTHO05D010286 1.0e-21 108.2 65 81.5
Nn117s43415 Nelumbo nucifera HOM05D008814 ORTHO05D010812 6.7e-18 95.5 121 50.4
Nn1g10110 Nelumbo nucifera HOM05D008814 ORTHO05D010812 6.7e-18 95.5 121 50.4
Nn1g10192 Nelumbo nucifera HOM05D008814 ORTHO05D010812 6.7e-18 95.5 121 50.4
unitig_87.g27938 Utricularia gibba HOM05D005210 ORTHO05D010286 1.2e-17 94.7 66 72.7
Psat0s4951g0200 Pisum sativum HOM05D002965 ORTHO05D010812 2.6e-17 93.6 62 69.4
TPR.G24723 Trifolium pratense HOM05D005210 ORTHO05D010286 1.8e-15 87.4 65 63.1
GSVIVG01005452001 Vitis vinifera HOM05D008814 ORTHO05D010812 1.5e-12 77.8 123 46.3
SHI11895 Sapria himalayana HOM05D005210 ORTHO05D010286 1.9e-12 77.4 89 51.7
CARHR283020 Cardamine hirsuta HOM05D005210 ORTHO05D010286 1.4e-10 71.2 42 78.6
ATMG00660 Arabidopsis thaliana HOM05D005210 ORTHO05D010286 1.8e-10 70.9 42 78.6
HanXRQChr14g0460771 Helianthus annuus HOM05D005210 ORTHO05D010286 1.8e-10 70.9 39 82.1
HanXRQMTg0579401 Helianthus annuus HOM05D005210 ORTHO05D010286 1.8e-10 70.9 39 82.1
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 7.0e-07 58.9 61 55.7
BcaC09g49585 Brassica carinata HOM05D008814 ORTHO05D010812 1.2e-06 58.2 61 50.8
BcaC02g09030 Brassica carinata HOM05D008814 ORTHO05D010812 2.0e-06 57.4 61 50.8
A04p09340 Brassica napus HOM05D008814 ORTHO05D010812 2.0e-06 57.4 61 50.8
BolSC28t60310H Brassica oleracea HOM05D008814 ORTHO05D010812 2.0e-06 57.4 61 50.8
BolSC28t60366H Brassica oleracea HOM05D008814 ORTHO05D010812 2.0e-06 57.4 61 50.8
BraSC48t46234Z Brassica rapa HOM05D008814 ORTHO05D010812 2.0e-06 57.4 61 50.8
CAN.G1109.2 Capsicum annuum HOM05D008814 ORTHO05D010812 2.0e-06 57.4 44 65.9
CAN.G960.18 Capsicum annuum HOM05D008814 ORTHO05D010812 3.5e-06 56.6 44 65.9
Solyc00g500343.1 Solanum lycopersicum HOM05D008814 ORTHO05D010812 3.5e-06 56.6 26 92.3
Solyc08g036500.1 Solanum lycopersicum HOM05D008814 ORTHO05D010812 3.5e-06 56.6 26 92.3
C01p34810 Brassica napus HOM05D008814 ORTHO05D010812 4.5e-06 56.2 69 44.9
TPR.G32938 Trifolium pratense HOM05D000951 ORTHO05D003644 5.9e-06 55.8 41 63.4


User provided reference genes

Program Settings