Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 2.8e-49 198.4 105 100.0
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 1.1e-45 186.4 105 93.3
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 3.0e-35 151.8 108 79.6
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 9.7e-34 146.7 116 73.3
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 6.3e-33 144.1 108 75.9
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 2.1e-20 102.4 105 59.0
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 2.1e-20 102.4 105 59.0
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 6.1e-20 100.9 106 59.4
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 6.1e-20 100.9 91 60.4
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 1.0e-19 100.1 106 59.4
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.8e-19 99.4 93 64.5
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 2.3e-19 99.0 92 62.0
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 3.0e-19 98.6 92 54.3
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 3.0e-19 98.6 92 59.8
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 4.0e-19 98.2 106 53.8
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 4.0e-19 98.2 92 62.0
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.5e-18 96.3 91 62.6
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 3.4e-18 95.1 89 55.1
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 5.7e-18 94.4 90 61.1
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 9.8e-18 93.6 78 60.3
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 9.8e-18 93.6 90 60.0
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 1.7e-17 92.8 91 57.1
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 2.2e-17 92.4 91 59.3
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.2e-17 92.4 91 53.8
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 2.2e-17 92.4 91 59.3
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 2.2e-17 92.4 92 59.8
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 2.8e-17 92.0 91 56.0
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.8e-17 92.0 87 57.5
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 2.8e-17 92.0 75 60.0
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 3.7e-17 91.7 90 52.2
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 3.7e-17 91.7 108 54.6
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 8.3e-17 90.5 85 57.6
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 8.3e-17 90.5 88 52.3
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 8.3e-17 90.5 104 49.0
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 1.1e-16 90.1 78 56.4
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 1.1e-16 90.1 75 58.7
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 1.1e-16 90.1 90 57.8
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.1e-16 90.1 92 52.2
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 1.1e-16 90.1 91 56.0
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 1.4e-16 89.7 90 57.8
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.4e-16 89.7 102 53.9
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 1.4e-16 89.7 90 52.2
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.4e-16 89.7 91 59.3
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.4e-16 89.7 90 54.4
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 1.8e-16 89.4 90 51.1
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.8e-16 89.4 92 56.5
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 1.8e-16 89.4 101 52.5
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 1.8e-16 89.4 91 57.1
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 1.8e-16 89.4 77 58.4
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 2.4e-16 89.0 92 53.3
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 2.4e-16 89.0 78 56.4
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 3.1e-16 88.6 92 54.3
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 3.1e-16 88.6 75 58.7
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 3.1e-16 88.6 75 58.7
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 3.1e-16 88.6 75 58.7
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 3.1e-16 88.6 75 58.7
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 3.1e-16 88.6 99 52.5
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 3.1e-16 88.6 95 50.5
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 4.1e-16 88.2 78 57.7
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 4.1e-16 88.2 90 52.2
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 5.4e-16 87.8 91 58.2
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 7.0e-16 87.4 90 51.1
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 7.0e-16 87.4 108 52.8
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 7.0e-16 87.4 89 52.8
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 7.0e-16 87.4 89 52.8
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 7.0e-16 87.4 89 52.8
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 7.0e-16 87.4 104 49.0
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 9.1e-16 87.0 91 54.9
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 9.1e-16 87.0 90 55.6
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 9.1e-16 87.0 101 52.5
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 9.1e-16 87.0 105 50.5
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 2.0e-15 85.9 79 62.0
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.0e-15 85.9 79 59.5
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 2.0e-15 85.9 88 55.7
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 2.7e-15 85.5 94 53.2
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 2.7e-15 85.5 69 63.8
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 2.7e-15 85.5 89 55.1
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 3.5e-15 85.1 90 50.0
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 3.5e-15 85.1 72 61.1
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 3.5e-15 85.1 106 50.0
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 3.5e-15 85.1 91 53.8
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 3.5e-15 85.1 91 56.0
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 3.5e-15 85.1 86 54.7
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 4.5e-15 84.7 89 51.7
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 4.5e-15 84.7 89 51.7
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 4.5e-15 84.7 99 49.5
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 4.5e-15 84.7 91 49.5
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 4.5e-15 84.7 91 49.5
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 5.9e-15 84.3 83 51.8
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 5.9e-15 84.3 92 56.5
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 5.9e-15 84.3 89 50.6
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 5.9e-15 84.3 91 57.1
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 1.0e-14 83.6 78 55.1
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 1.0e-14 83.6 92 48.9
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 1.3e-14 83.2 74 58.1
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.3e-14 83.2 94 53.2
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.3e-14 83.2 87 55.2
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 1.3e-14 83.2 109 47.7
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.7e-14 82.8 98 53.1
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 1.7e-14 82.8 94 55.3
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 1.7e-14 82.8 81 60.5
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 2.9e-14 82.0 90 52.2
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 2.9e-14 82.0 90 50.0
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 2.9e-14 82.0 91 54.9
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 3.8e-14 81.6 87 54.0
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 3.8e-14 81.6 88 55.7
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 5.0e-14 81.3 57 70.2
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 8.5e-14 80.5 78 55.1
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.1e-13 80.1 87 49.4
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.5e-13 79.7 102 50.0
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 1.5e-13 79.7 58 70.7
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 1.5e-13 79.7 96 50.0
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.9e-13 79.3 62 64.5
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 1.9e-13 79.3 103 47.6
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 2.5e-13 79.0 92 53.3
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 4.2e-13 78.2 92 52.2
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 5.5e-13 77.8 90 46.7
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 7.2e-13 77.4 73 57.5
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 1.6e-12 76.3 92 46.7
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 3.6e-12 75.1 69 53.6
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.6e-12 75.1 81 48.1
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 3.6e-12 75.1 92 48.9
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 4.7e-12 74.7 107 47.7
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 1.0e-11 73.6 90 47.8
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 1.8e-11 72.8 95 49.5
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 2.3e-11 72.4 95 47.4
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 3.0e-11 72.0 89 46.1
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 5.2e-11 71.2 89 44.9
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 5.2e-11 71.2 87 50.6
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 6.8e-11 70.9 91 46.2
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.6e-10 68.9 86 51.2
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 4.4e-10 68.2 96 47.9
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 5.7e-10 67.8 91 49.5
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 9.8e-10 67.0 80 53.8
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.7e-09 66.2 78 48.7
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 1.7e-09 66.2 68 51.5
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 2.8e-09 65.5 96 44.8
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 6.3e-09 64.3 88 45.5
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 8.3e-09 63.9 78 52.6
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 8.3e-09 63.9 84 40.5
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.1e-08 63.5 69 55.1
SalBow6G5095 Salvia bowleyana HOM05D004289 ORTHO05D005141 1.1e-08 63.5 106 40.6
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 1.4e-08 63.2 38 76.3
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.1e-08 62.0 40 72.5
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.1e-08 62.0 40 72.5
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 3.1e-08 62.0 40 72.5
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 9.2e-08 60.5 53 54.7
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 1.2e-07 60.1 74 40.5
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 4.5e-07 58.2 78 41.0
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 7.7e-07 57.4 75 41.3
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 7.7e-07 57.4 75 41.3
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.0e-06 57.0 77 40.3
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.0e-06 57.0 77 40.3
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 1.3e-06 56.6 98 42.9
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 2.3e-06 55.8 75 44.0
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 2.3e-06 55.8 93 44.1
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 2.3e-06 55.8 70 44.3
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.3e-06 55.8 76 42.1
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 2.9e-06 55.5 77 40.3
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 2.9e-06 55.5 92 45.7
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 2.9e-06 55.5 74 41.9
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 3.8e-06 55.1 72 45.8
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 3.8e-06 55.1 74 47.3
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 3.8e-06 55.1 71 46.5
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 3.8e-06 55.1 59 50.8
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 5.0e-06 54.7 75 41.3
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 5.0e-06 54.7 68 44.1
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 5.0e-06 54.7 72 44.4
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 5.0e-06 54.7 71 46.5
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 6.6e-06 54.3 69 39.1
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 6.6e-06 54.3 72 41.7
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 6.6e-06 54.3 76 40.8
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 6.6e-06 54.3 77 45.5
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 6.6e-06 54.3 78 39.7
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 8.6e-06 53.9 79 46.8


User provided reference genes

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