Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g011230 Solanum pennellii HOM05D007955 ORTHO05D010034 4.5e-61 237.7 112 100.0
Solyc11g021365.2 Solanum lycopersicum HOM05D007955 ORTHO05D010034 9.3e-59 229.9 112 97.3
PGSC0003DMG400009285 Solanum tuberosum HOM05D007955 ORTHO05D010034 1.3e-49 199.5 112 86.6
Nitab4.5_0002013g0010 Nicotiana tabacum HOM05D007955 ORTHO05D010034 4.5e-45 184.5 123 77.2
Nitab4.5_0003211g0020 Nicotiana tabacum HOM05D007955 ORTHO05D010034 4.2e-43 177.9 123 74.0
arahy.Tifrunner.gnm1.ann1.6E9FUG Arachis hypogaea HOM05D007955 ORTHO05D010034 2.2e-36 155.6 120 65.0
Sp1g20140 Schrenkiella parvula HOM05D007955 ORTHO05D010034 6.5e-36 154.1 101 75.2
arahy.Tifrunner.gnm1.ann1.T5U9L2 Arachis hypogaea HOM05D007955 ORTHO05D010034 1.1e-35 153.3 120 64.2
Dinv41742 Davidia involucrata HOM05D007955 ORTHO05D010034 5.5e-35 151.0 117 64.1
QL02p025993 Quercus lobata HOM05D007955 ORTHO05D010034 7.2e-35 150.6 128 61.7
TWI14G1427 Tripterygium wilfordii HOM05D007955 ORTHO05D010034 7.2e-35 150.6 108 65.7
AT1G22630 Arabidopsis thaliana HOM05D007955 ORTHO05D010034 9.4e-35 150.2 113 65.5
Hund16783 Selenicereus undatus HOM05D007955 ORTHO05D010034 9.4e-35 150.2 79 83.5
AL1G36160 Arabidopsis lyrata HOM05D007955 ORTHO05D010034 2.1e-34 149.1 113 65.5
CANSAT25G1976 Cannabis sativa HOM05D007955 ORTHO05D010034 2.1e-34 149.1 102 70.6
Peaxi162Scf00391g00733 Petunia axillaris HOM05D007955 ORTHO05D010034 2.1e-34 149.1 119 65.5
PGR042G1239 Punica granatum HOM05D007955 ORTHO05D010034 2.1e-34 149.1 86 79.1
Sc23g0001440 Simmondsia chinensis HOM05D007955 ORTHO05D010034 2.7e-34 148.7 104 67.3
Potri.013G108100 Populus trichocarpa HOM05D007955 ORTHO05D010034 3.6e-34 148.3 82 82.9
Thhalv10009125m.g Eutrema salsugineum HOM05D007955 ORTHO05D010034 1.0e-33 146.7 99 73.7
Eucgr.F03002 Eucalyptus grandis HOM05D007955 ORTHO05D010034 1.4e-33 146.4 83 80.7
CSS0011086 Camellia sinensis var. sinensis HOM05D007955 ORTHO05D010034 1.8e-33 146.0 81 80.2
Hma1.2p1_0004F.1_g003980 Hydrangea macrophylla HOM05D007955 ORTHO05D010034 1.8e-33 146.0 77 84.4
MD15G1408300 Malus domestica HOM05D007955 ORTHO05D010034 1.8e-33 146.0 76 84.2
EL10Ac1g00118 Beta vulgaris HOM05D007955 ORTHO05D010034 2.3e-33 145.6 81 84.0
RcHm_v2.0_Chr7g0228151 Rosa chinensis HOM05D007955 ORTHO05D010034 2.3e-33 145.6 97 72.2
Carub.0001s2214 Capsella rubella HOM05D007955 ORTHO05D010034 3.0e-33 145.2 113 64.6
HanXRQChr02g0044251 Helianthus annuus HOM05D007955 ORTHO05D010034 3.0e-33 145.2 101 68.3
Gohir.A05G273100 Gossypium hirsutum HOM05D007955 ORTHO05D010034 5.1e-33 144.4 109 69.7
Gohir.D05G275500 Gossypium hirsutum HOM05D007955 ORTHO05D010034 5.1e-33 144.4 109 69.7
Gorai.009G288600 Gossypium raimondii HOM05D007955 ORTHO05D010034 5.1e-33 144.4 109 69.7
Lsat_1_v5_gn_1_12280 Lactuca sativa HOM05D007955 ORTHO05D010034 5.1e-33 144.4 95 69.5
CARHR023000 Cardamine hirsuta HOM05D007955 ORTHO05D010034 6.7e-33 144.1 116 65.5
BcaC07g39172 Brassica carinata HOM05D007955 ORTHO05D010034 8.8e-33 143.7 121 62.8
Manes.18G103900 Manihot esculenta HOM05D007955 ORTHO05D010034 8.8e-33 143.7 77 85.7
Duzib177G0365 Durio zibethinus HOM05D007955 ORTHO05D010034 2.6e-32 142.1 83 79.5
FvH4_5g32101 Fragaria vesca HOM05D007955 ORTHO05D010034 2.6e-32 142.1 95 72.6
THA.LOC104809734 Tarenaya hassleriana HOM05D007955 ORTHO05D010034 2.6e-32 142.1 101 66.3
Aa31LG7G6520 Aethionema arabicum HOM05D007955 ORTHO05D010034 4.4e-32 141.4 101 68.3
Rhsim06G0114600 Rhododendron simsii HOM05D007955 ORTHO05D010034 4.4e-32 141.4 81 80.2
ECA247G2775 Erigeron canadensis HOM05D001035 ORTHO05D001045 5.7e-32 141.0 88 73.9
Thecc.08G188200 Theobroma cacao HOM05D007955 ORTHO05D010034 5.7e-32 141.0 76 86.8
BolC8t49802H Brassica oleracea HOM05D007955 ORTHO05D010034 9.7e-32 140.2 121 61.2
DCAR_001459 Daucus carota HOM05D007955 ORTHO05D010034 2.2e-31 139.0 83 77.1
CDE05G3389 Ceratophyllum demersum HOM05D007955 ORTHO05D010034 3.1e-30 135.2 102 63.7
MBI03_g18672_MAGBIO Magnolia biondii HOM05D007955 ORTHO05D010034 3.1e-30 135.2 93 67.7
MELO3C021951.2 Cucumis melo HOM05D007955 ORTHO05D010034 4.1e-30 134.8 62 91.9
CsaV3_2G014460 Cucumis sativus L. HOM05D007955 ORTHO05D010034 4.1e-30 134.8 62 91.9
ClCG00G002970 Citrullus lanatus HOM05D007955 ORTHO05D010034 6.9e-30 134.0 81 76.5
ClCG09G017850 Citrullus lanatus HOM05D007955 ORTHO05D010034 6.9e-30 134.0 81 76.5
Glyma.08G239000 Glycine max HOM05D007955 ORTHO05D010034 4.5e-29 131.3 113 59.3
VMungo1127G1330 Vigna mungo HOM05D007955 ORTHO05D010034 7.7e-29 130.6 79 74.7
Migut.C01298 Erythranthe guttata HOM05D007955 ORTHO05D010034 3.8e-28 128.3 89 68.5
A08p28450 Brassica napus HOM05D000726 ORTHO05D010034 9.4e-27 123.6 96 67.7
C08p21650 Brassica napus HOM05D000726 ORTHO05D010034 1.2e-26 123.2 113 58.4
Aqoxy6G00096 Aquilegia oxysepala HOM05D007955 ORTHO05D010034 6.1e-26 120.9 92 58.7
BraA08t34774Z Brassica rapa HOM05D000726 ORTHO05D010034 3.0e-25 118.6 118 56.8
Haze_21296 Corylus avellana HOM05D007955 ORTHO05D010034 1.5e-24 116.3 122 51.6
Cfa012936 Carpinus fangiana HOM05D007955 ORTHO05D010034 3.3e-24 115.2 121 51.2
CiPaw.07G236600 Carya illinoinensis HOM05D007955 ORTHO05D010034 7.4e-24 114.0 124 52.4
TPR.G34150 Trifolium pratense HOM05D007955 ORTHO05D010034 3.7e-23 111.7 116 54.3
Nn3g20179 Nelumbo nucifera HOM05D007955 ORTHO05D010034 8.2e-23 110.5 106 57.5
Pp3c19_10130 Physcomitrium patens HOM05D007955 ORTHO05D010034 9.1e-22 107.1 67 70.1
Prupe.1G552800 Prunus persica HOM05D007955 ORTHO05D010034 1.2e-21 106.7 99 56.6
HPP92_004623 Vanilla planifolia HOM05D007955 ORTHO05D010034 2.0e-21 105.9 76 65.8
Medtr4g032905 Medicago truncatula HOM05D007955 ORTHO05D010034 5.9e-21 104.4 121 50.4
SGA_v2.0_scaffold24G10574 Striga asiatica HOM05D007955 ORTHO05D010034 5.9e-21 104.4 80 66.2
SMO119G0376 Selaginella moellendorffii HOM05D007955 ORTHO05D010034 6.5e-20 100.9 64 70.3
SEGI_23617 Sequoiadendron giganteum HOM05D007955 ORTHO05D010034 1.9e-19 99.4 81 61.7
Os05g0105800 Oryza sativa ssp. japonica HOM05D007955 ORTHO05D010034 3.2e-19 98.6 45 93.3
PSO170G1023 Papaver somniferum HOM05D007955 ORTHO05D010034 3.6e-18 95.1 117 47.0
vmacro12469 Vaccinium macrocarpon HOM05D007955 ORTHO05D010034 3.6e-18 95.1 46 89.1
Cc00_g22060 Coffea canephora HOM05D007955 ORTHO05D010034 6.1e-18 94.4 84 63.1
PSO782G1662 Papaver somniferum HOM05D007955 ORTHO05D010034 6.1e-18 94.4 80 61.2
unitig_578.g16590 Utricularia gibba HOM05D007955 ORTHO05D010034 6.1e-18 94.4 66 66.7
Zm00001eb356110 Zea mays HOM05D007955 ORTHO05D010034 8.8e-17 90.5 84 54.8
AagrBONN_evm.TU.Sc2ySwM_228.898 Anthoceros agrestis HOM05D007955 ORTHO05D010034 1.5e-16 89.7 91 50.5
Mapoly0510s0001 Marchantia polymorpha HOM05D007955 ORTHO05D010034 3.7e-15 85.1 94 51.1
FAN08G1854 Fragaria x ananassa HOM05D000666 ORTHO05D001431 7.0e-14 80.9 66 65.2
FAN13G0857 Fragaria x ananassa HOM05D000666 ORTHO05D001431 2.0e-13 79.3 66 63.6
Sed0016691 Sechium edule HOM05D007955 ORTHO05D010034 6.5e-12 74.3 51 70.6
CBR_g36554 Chara braunii HOM05D007955 ORTHO05D010034 4.4e-08 61.6 30 83.3


User provided reference genes

Program Settings