Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g011050 Solanum pennellii HOM05D006728 ORTHO05D007911 0.0e+00 1491.9 774 100.0
PGSC0003DMG400009266 Solanum tuberosum HOM05D006728 ORTHO05D007911 0.0e+00 1392.1 774 93.9
CAN.G102.5 Capsicum annuum HOM05D006728 ORTHO05D007911 0.0e+00 1271.5 774 85.9
Nitab4.5_0000365g0060 Nicotiana tabacum HOM05D006728 ORTHO05D007911 0.0e+00 1117.4 780 77.2
Peaxi162Scf00391g00619 Petunia axillaris HOM05D006728 ORTHO05D007911 0.0e+00 1078.9 737 78.8
Nitab4.5_0004437g0010 Nicotiana tabacum HOM05D006728 ORTHO05D007911 3.5e-282 974.9 670 77.2
Solyc11g020910.3 Solanum lycopersicum HOM05D006728 ORTHO05D007911 2.9e-276 955.3 503 99.0
Dinv41739 Davidia involucrata HOM05D006728 ORTHO05D007911 1.3e-175 620.9 767 47.5
MSTRG.1553 Avicennia marina HOM05D006728 ORTHO05D007911 1.2e-157 561.2 785 43.7
Actinidia23017 Actinidia chinensis HOM05D006728 ORTHO05D007911 2.5e-155 553.5 779 45.4
Migut.C01293 Erythranthe guttata HOM05D006728 ORTHO05D007911 4.1e-153 546.2 784 44.1
Oeu051790.1 Olea europaea HOM05D006728 ORTHO05D007911 1.5e-147 527.7 750 44.1
Cc10_g10290 Coffea canephora HOM05D006728 ORTHO05D007911 3.1e-145 520.0 760 43.4
Hma1.2p1_0705F.1_g206940 Hydrangea macrophylla HOM05D006728 ORTHO05D007911 5.3e-145 519.2 804 42.9
CSS0015483 Camellia sinensis var. sinensis HOM05D006728 ORTHO05D007911 7.4e-139 498.8 714 45.5
vmacro12473 Vaccinium macrocarpon HOM05D006728 ORTHO05D007911 1.1e-137 495.0 810 42.8
TAR381G1619 Trochodendron aralioides HOM05D006728 ORTHO05D007911 2.2e-135 487.3 766 40.5
GSVIVG01012775001 Vitis vinifera HOM05D006728 ORTHO05D007911 2.2e-135 487.3 713 43.5
CiPaw.03G020000 Carya illinoinensis HOM05D006728 ORTHO05D007911 1.2e-133 481.5 775 41.4
Rhsim10G0109300 Rhododendron simsii HOM05D006728 ORTHO05D007911 3.6e-133 479.9 687 46.3
Migut.J01202 Erythranthe guttata HOM05D006728 ORTHO05D007911 6.3e-130 469.2 639 46.3
SalBow7G3045 Salvia bowleyana HOM05D006728 ORTHO05D007911 2.0e-128 464.2 740 40.8
ClCG08G000330 Citrullus lanatus HOM05D006728 ORTHO05D007911 1.6e-125 454.5 749 39.4
QL09p005234 Quercus lobata HOM05D006728 ORTHO05D007911 1.0e-124 451.8 756 39.6
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 1.5e-123 448.0 739 40.1
Potri.004G133900 Populus trichocarpa HOM05D006728 ORTHO05D007911 2.2e-119 434.1 760 38.6
Gohir.D05G252600 Gossypium hirsutum HOM05D006728 ORTHO05D007911 1.1e-118 431.8 796 37.3
Gorai.009G264600 Gossypium raimondii HOM05D006728 ORTHO05D007911 1.1e-118 431.8 797 37.4
Sabra04G0084300 Salix brachista HOM05D006728 ORTHO05D007911 7.2e-118 429.1 764 38.4
unitig_749.g13882 Utricularia gibba HOM05D006728 ORTHO05D007911 7.2e-118 429.1 742 38.8
Sed0021340 Sechium edule HOM05D006728 ORTHO05D007911 1.6e-117 427.9 746 38.5
Atru.chr13.2383 Acer truncatum HOM05D006728 ORTHO05D007911 2.3e-116 424.1 754 38.7
Manes.01G125500 Manihot esculenta HOM05D006728 ORTHO05D007911 5.2e-116 422.9 758 37.2
CsaV3_5G040430 Cucumis sativus L. HOM05D006728 ORTHO05D007911 5.7e-115 419.5 754 37.8
MELO3C022215.2 Cucumis melo HOM05D006728 ORTHO05D007911 3.1e-113 413.7 752 38.6
Gohir.A05G251200 Gossypium hirsutum HOM05D006728 ORTHO05D007911 3.1e-113 413.7 753 37.2
COL.COLO4_24796 Corchorus olitorius HOM05D006728 ORTHO05D007911 2.0e-112 411.0 781 36.2
Haze_13898 Corylus avellana HOM05D006728 ORTHO05D007911 1.7e-111 407.9 758 38.4
MD15G1410500 Malus domestica HOM05D006728 ORTHO05D007911 3.2e-110 403.7 796 36.3
TWI59G0071 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 3.2e-110 403.7 768 36.2
FAN08G1230 Fragaria x ananassa HOM05D006728 ORTHO05D007911 4.0e-108 396.7 756 36.6
RcHm_v2.0_Chr7g0228481 Rosa chinensis HOM05D006728 ORTHO05D007911 1.3e-106 391.7 798 35.6
FAN04G0014 Fragaria x ananassa HOM05D006728 ORTHO05D007911 2.4e-105 387.5 757 36.7
FAN13G2633 Fragaria x ananassa HOM05D006728 ORTHO05D007911 2.4e-105 387.5 756 36.4
FvH4_5g32290 Fragaria vesca HOM05D006728 ORTHO05D007911 9.2e-105 385.6 758 36.3
THA.LOC104799928 Tarenaya hassleriana HOM05D006728 ORTHO05D007911 5.9e-104 382.9 800 35.1
FAN18G3195 Fragaria x ananassa HOM05D006728 ORTHO05D007911 7.8e-104 382.5 758 36.0
TWI23G0528 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 2.8e-101 374.0 769 35.6
Nn1g02058 Nelumbo nucifera HOM05D006728 ORTHO05D007911 1.5e-99 368.2 772 35.5
Lsat_1_v5_gn_4_133160 Lactuca sativa HOM05D006728 ORTHO05D007911 5.0e-95 353.2 753 35.3
Ciclev10004396m.g Citrus clementina HOM05D006728 ORTHO05D007911 1.6e-93 348.2 791 34.4
HanXRQChr17g0559021 Helianthus annuus HOM05D006728 ORTHO05D007911 1.6e-93 348.2 745 34.0
PGR044G1487 Punica granatum HOM05D006728 ORTHO05D007911 3.6e-93 347.1 762 34.9
ECA232G4554 Erigeron canadensis HOM05D006728 ORTHO05D007911 2.6e-91 340.9 786 33.5
DCAR_011523 Daucus carota HOM05D006728 ORTHO05D007911 2.7e-88 330.9 776 33.8
Eucgr.J01411 Eucalyptus grandis HOM05D006728 ORTHO05D007911 7.8e-88 329.3 666 35.0
Prupe.1G552000 Prunus persica HOM05D006728 ORTHO05D007911 2.2e-82 311.2 549 37.7
PSO144G0035 Papaver somniferum HOM05D006728 ORTHO05D007911 4.6e-80 303.5 736 32.6
Psat6g140120 Pisum sativum HOM05D006728 ORTHO05D007911 3.9e-79 300.4 701 32.7
Aa31LG5G9990 Aethionema arabicum HOM05D006728 ORTHO05D007911 6.2e-77 293.1 828 31.9
CARHR235190 Cardamine hirsuta HOM05D006728 ORTHO05D007911 1.1e-76 292.4 800 32.1
Medtr1g072850 Medicago truncatula HOM05D006728 ORTHO05D007911 5.8e-75 286.6 700 33.4
Sp7g25450 Schrenkiella parvula HOM05D006728 ORTHO05D007911 7.6e-75 286.2 795 31.8
Phvul.L001685 Phaseolus vulgaris HOM05D006728 ORTHO05D007911 6.4e-74 283.1 699 33.9
ATR0487G015 Amborella trichopoda HOM05D006728 ORTHO05D007911 9.2e-73 279.3 747 30.9
Ca_09788_v3 Cicer arietinum L. HOM05D006728 ORTHO05D007911 1.6e-72 278.5 692 32.2
PSO325G0011 Papaver somniferum HOM05D006728 ORTHO05D007911 2.1e-72 278.1 715 32.9
Glyma.02G174700 Glycine max HOM05D006728 ORTHO05D007911 3.5e-72 277.3 652 34.0
Thecc.03G072600 Theobroma cacao HOM05D006728 ORTHO05D007911 1.7e-71 275.0 469 38.8
VMungo0720G2132 Vigna mungo HOM05D006728 ORTHO05D007911 8.7e-71 272.7 695 32.8
Lalb_Chr21g0312581 Lupinus albus HOM05D006728 ORTHO05D007911 4.3e-70 270.4 651 34.7
TPR.G18562 Trifolium pratense HOM05D006728 ORTHO05D007911 7.3e-70 269.6 701 32.0
AT4G27510 Arabidopsis thaliana HOM05D006728 ORTHO05D007911 1.4e-68 265.4 798 30.7
Thhalv10024534m.g Eutrema salsugineum HOM05D006728 ORTHO05D007911 2.0e-67 261.5 782 31.2
SHI29298 Sapria himalayana HOM05D006728 ORTHO05D007911 2.6e-67 261.2 591 34.0
C01p23690 Brassica napus HOM05D006728 ORTHO05D007911 5.8e-67 260.0 790 31.4
BolC1t02321H Brassica oleracea HOM05D006728 ORTHO05D007911 7.6e-67 259.6 790 31.3
Carub.0007s1334 Capsella rubella HOM05D006728 ORTHO05D007911 1.7e-66 258.5 808 30.2
Cpa.g.c30412.3 Carica papaya HOM05D006728 ORTHO05D007911 1.7e-66 258.5 476 37.8
A01p18730 Brassica napus HOM05D006728 ORTHO05D007911 3.2e-65 254.2 794 30.9
Aqoxy7G02767 Aquilegia oxysepala HOM05D006728 ORTHO05D007911 4.2e-65 253.8 761 31.5
Glyma.10G191500 Glycine max HOM05D006728 ORTHO05D007911 8.7e-63 246.1 594 33.0
BraA01t01819Z Brassica rapa HOM05D006728 ORTHO05D007911 1.3e-61 242.3 804 30.5
Lj5g0018420 Lotus japonicus HOM05D006728 ORTHO05D007911 3.6e-61 240.7 664 32.1
Sc24g0002590 Simmondsia chinensis HOM05D006728 ORTHO05D007911 6.9e-60 236.5 738 30.6
arahy.Tifrunner.gnm1.ann1.2Y318K Arachis hypogaea HOM05D006728 ORTHO05D007911 6.0e-56 223.4 728 30.2
PSO170G3307 Papaver somniferum HOM05D006728 ORTHO05D007911 9.6e-54 216.1 744 28.9
PSO325G0006 Papaver somniferum HOM05D006728 ORTHO05D007911 1.5e-51 208.8 637 31.2
Hund02381 Selenicereus undatus HOM05D006728 ORTHO05D007911 4.6e-48 197.2 748 28.5
AUR62037055 Chenopodium quinoa HOM05D006728 ORTHO05D007911 2.3e-47 194.9 741 28.1
arahy.Tifrunner.gnm1.ann1.HTR7VF Arachis hypogaea HOM05D006728 ORTHO05D007911 1.5e-46 192.2 526 30.8
BcaNung07241 Brassica carinata HOM05D006728 ORTHO05D007911 1.5e-46 192.2 787 28.0
arahy.Tifrunner.gnm1.ann1.PFS1J6 Arachis hypogaea HOM05D006728 ORTHO05D007911 3.3e-46 191.0 537 30.9
Atru.chr1.2802 Acer truncatum HOM05D006728 ORTHO05D007911 2.8e-45 188.0 360 36.7
Nn3g16574 Nelumbo nucifera HOM05D006728 ORTHO05D007911 2.8e-45 188.0 767 26.3
arahy.Tifrunner.gnm1.ann1.SM6YYV Arachis hypogaea HOM05D006728 ORTHO05D007911 3.7e-45 187.6 536 31.0
EL10Ac7g16629 Beta vulgaris HOM05D006728 ORTHO05D007911 6.0e-40 170.2 724 27.6
AUR62036525 Chenopodium quinoa HOM05D006728 ORTHO05D007911 1.1e-36 159.5 597 27.1
Cpa.g.c34985.1 Carica papaya HOM05D006728 ORTHO05D007911 5.1e-31 140.6 250 36.4
PSO170G3890 Papaver somniferum HOM05D006728 ORTHO05D007911 5.9e-27 127.1 425 30.6
HPP92_000129 Vanilla planifolia HOM05D006728 ORTHO05D007911 5.0e-26 124.0 705 23.5
SEGI_13662 Sequoiadendron giganteum HOM05D013057 ORTHO05D007911 1.4e-25 122.5 739 24.6
arahy.Tifrunner.gnm1.ann1.G54CSB Arachis hypogaea HOM05D006728 ORTHO05D007911 1.2e-16 92.8 295 31.2
Cfa008144 Carpinus fangiana HOM05D006728 ORTHO05D007911 8.0e-16 90.1 84 56.0
Atru.chr1.2803 Acer truncatum HOM05D006728 ORTHO05D007911 3.3e-14 84.7 139 40.3
TPR.G18439 Trifolium pratense HOM05D006728 ORTHO05D007911 2.2e-13 82.0 118 40.7
CDE05G2798 Ceratophyllum demersum HOM05D006728 ORTHO05D007911 4.1e-12 77.8 134 37.3
Glyma.20G198666 Glycine max HOM05D006728 ORTHO05D007911 6.5e-10 70.5 166 33.1
Zm00001eb295040 Zea mays HOM05D006728 ORTHO05D007911 1.6e-08 65.9 566 22.4
Glyma.20G198732 Glycine max HOM05D006728 ORTHO05D007911 1.4e-07 62.8 116 35.3
SHI29297 Sapria himalayana HOM05D006728 ORTHO05D007911 2.3e-07 62.0 69 49.3
SEGI_13134 Sequoiadendron giganteum HOM05D013057 ORTHO05D007911 1.5e-06 59.3 315 26.7


User provided reference genes

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