Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 3.0e-30 134.8 82 100.0
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 1.5e-29 132.5 82 92.7
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.8e-27 125.6 84 92.9
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 9.6e-21 103.2 85 67.1
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.3e-20 102.8 86 67.4
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 3.7e-20 101.3 86 67.4
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 1.1e-19 99.8 87 64.4
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.4e-19 99.4 86 74.4
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 4.0e-19 97.8 80 67.5
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 4.0e-19 97.8 86 64.0
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 6.9e-19 97.1 76 71.1
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 3.4e-18 94.7 88 63.6
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 2.9e-17 91.7 110 58.2
CAN.G160.9 Capsicum annuum HOM05D006325 ORTHO05D007878 2.9e-17 91.7 86 72.1
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 8.4e-17 90.1 107 62.6
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 1.1e-16 89.7 107 62.6
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 2.5e-16 88.6 78 74.4
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 2.5e-16 88.6 86 54.7
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 3.2e-16 88.2 75 61.3
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 5.5e-16 87.4 86 68.6
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 7.1e-16 87.0 75 60.0
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 2.3e-14 82.0 79 55.7
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 2.3e-14 82.0 79 55.7
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 1.1e-13 79.7 96 59.4
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 1.5e-13 79.3 99 47.5
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 4.3e-13 77.8 85 45.9
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 5.7e-13 77.4 82 51.2
Manes.17G073700 Manihot esculenta HOM05D006325 ORTHO05D007878 7.4e-13 77.0 82 61.0
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 1.3e-12 76.3 78 52.6
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 1.3e-12 76.3 85 45.9
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 2.8e-12 75.1 82 48.8
Haze_05647 Corylus avellana HOM05D006325 ORTHO05D007878 3.7e-12 74.7 82 61.0
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 3.7e-12 74.7 87 60.9
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 3.7e-12 74.7 80 48.8
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 1.4e-11 72.8 82 45.1
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 1.8e-11 72.4 85 47.1
Ca_18164_v3 Cicer arietinum L. HOM05D006325 ORTHO05D007878 2.4e-11 72.0 83 45.8
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 2.4e-11 72.0 86 45.3
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 3.1e-11 71.6 86 58.1
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 4.0e-11 71.2 77 50.6
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 4.0e-11 71.2 79 49.4
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 4.0e-11 71.2 87 56.3
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 5.3e-11 70.9 90 45.6
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 5.3e-11 70.9 87 48.3
Lalb_Chr07g0187521 Lupinus albus HOM05D006325 ORTHO05D007878 5.3e-11 70.9 95 55.8
Peaxi162Scf00062g00009 Petunia axillaris HOM05D006325 ORTHO05D007878 5.3e-11 70.9 54 72.2
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 6.9e-11 70.5 90 48.9
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 6.9e-11 70.5 90 48.9
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 9.0e-11 70.1 44 77.3
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 1.2e-10 69.7 46 71.7
CiPaw.09G120800 Carya illinoinensis HOM05D006325 ORTHO05D007878 1.2e-10 69.7 80 47.5
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.2e-10 69.7 90 48.9
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 1.2e-10 69.7 46 67.4
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 1.5e-10 69.3 46 67.4
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 2.0e-10 68.9 84 46.4
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 3.4e-10 68.2 39 82.1
Eucgr.D00273 Eucalyptus grandis HOM05D006325 ORTHO05D007878 3.4e-10 68.2 43 76.7
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 3.4e-10 68.2 46 71.7
TPR.G34042 Trifolium pratense HOM05D006325 ORTHO05D007878 3.4e-10 68.2 81 45.7
Oeu030957.1 Olea europaea HOM05D006325 ORTHO05D007878 4.5e-10 67.8 44 72.7
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 5.8e-10 67.4 94 46.8
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 5.8e-10 67.4 43 74.4
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 5.8e-10 67.4 91 44.0
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 5.8e-10 67.4 93 43.0
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 7.6e-10 67.0 90 47.8
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 7.6e-10 67.0 90 47.8
Lj4g0010729 Lotus japonicus HOM05D006325 ORTHO05D007878 7.6e-10 67.0 84 52.4
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 1.0e-09 66.6 44 72.7
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 1.3e-09 66.2 47 66.0
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 1.3e-09 66.2 91 42.9
Lj4g0007216 Lotus japonicus HOM05D006325 ORTHO05D007878 1.3e-09 66.2 86 55.8
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 1.7e-09 65.9 50 64.0
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 1.7e-09 65.9 86 44.2
Medtr4g083110 Medicago truncatula HOM05D006325 ORTHO05D007878 1.7e-09 65.9 79 46.8
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 2.2e-09 65.5 50 64.0
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 2.2e-09 65.5 50 64.0
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 2.2e-09 65.5 50 64.0
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 2.2e-09 65.5 50 64.0
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 2.9e-09 65.1 39 79.5
Oeu030955.1 Olea europaea HOM05D006325 ORTHO05D007878 3.8e-09 64.7 38 78.9
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 6.5e-09 63.9 45 66.7
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 6.5e-09 63.9 51 60.8
Medtr5g077640 Medicago truncatula HOM05D006325 ORTHO05D007878 6.5e-09 63.9 83 42.2
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 6.5e-09 63.9 39 76.9
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 8.4e-09 63.5 87 44.8
Gohir.A05G146600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 1.1e-08 63.2 41 70.7
Gohir.D05G149100 Gossypium hirsutum HOM05D006325 ORTHO05D007878 1.1e-08 63.2 41 70.7
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 1.1e-08 63.2 41 70.7
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 1.4e-08 62.8 51 62.7
Psat7g080320 Pisum sativum HOM05D006325 ORTHO05D007878 1.4e-08 62.8 86 40.7
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 1.4e-08 62.8 51 62.7
TPR.G13312 Trifolium pratense HOM05D006325 ORTHO05D007878 1.4e-08 62.8 87 55.2
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 1.9e-08 62.4 45 64.4
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 1.9e-08 62.4 50 60.0
TPR.G21965 Trifolium pratense HOM05D006325 ORTHO05D007878 1.9e-08 62.4 87 54.0
MBI18_g11235_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 2.5e-08 62.0 80 48.8
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 3.2e-08 61.6 50 60.0
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 3.2e-08 61.6 50 60.0
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 3.2e-08 61.6 50 60.0
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 3.2e-08 61.6 50 60.0
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 7.1e-08 60.5 45 60.0
COL.COLO4_31021 Corchorus olitorius HOM05D006325 ORTHO05D007878 7.1e-08 60.5 37 75.7
Medtr5g077680 Medicago truncatula HOM05D006325 ORTHO05D007878 7.1e-08 60.5 46 58.7
Medtr8g079458 Medicago truncatula HOM05D006325 ORTHO05D007878 7.1e-08 60.5 46 58.7
Nn4g26622 Nelumbo nucifera HOM05D006325 ORTHO05D007878 7.1e-08 60.5 50 64.0
Gohir.A06G139600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 9.3e-08 60.1 44 63.6
Gohir.D06G144350 Gossypium hirsutum HOM05D006325 ORTHO05D007878 9.3e-08 60.1 44 63.6
Gorai.010G168000 Gossypium raimondii HOM05D006325 ORTHO05D007878 9.3e-08 60.1 44 63.6
Manes.15G124400 Manihot esculenta HOM05D006325 ORTHO05D007878 9.3e-08 60.1 39 69.2
MELO3C002763.2 Cucumis melo HOM05D006325 ORTHO05D007878 1.2e-07 59.7 78 43.6
Medtr4g012020 Medicago truncatula HOM05D006325 ORTHO05D007878 2.1e-07 58.9 46 56.5
Duzib160G0583 Durio zibethinus HOM05D006325 ORTHO05D007878 2.7e-07 58.5 47 55.3
Medtr1437s0010 Medicago truncatula HOM05D006325 ORTHO05D007878 3.5e-07 58.2 44 59.1
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 4.6e-07 57.8 40 65.0
CsaV3_1G036810 Cucumis sativus L. HOM05D006325 ORTHO05D007878 6.1e-07 57.4 76 46.1
MBI02_g07020_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 1.0e-06 56.6 82 52.4
Gohir.A10G043400 Gossypium hirsutum HOM05D006325 ORTHO05D007878 3.0e-06 55.1 44 63.6
Gohir.D10G044600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 3.0e-06 55.1 44 63.6
Gorai.011G047600 Gossypium raimondii HOM05D006325 ORTHO05D007878 3.0e-06 55.1 44 63.6
ClCG03G006550 Citrullus lanatus HOM05D006325 ORTHO05D007878 5.1e-06 54.3 83 43.4
PSO541G2396 Papaver somniferum HOM05D006325 ORTHO05D007878 5.1e-06 54.3 37 70.3


User provided reference genes

Program Settings