Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 2.9e-225 785.0 433 100.0
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 6.3e-220 767.3 433 97.7
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.3e-188 663.3 458 82.1
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 1.8e-187 659.4 433 84.1
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 1.1e-184 650.2 429 81.6
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 3.2e-184 648.7 448 81.9
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 7.8e-146 521.2 304 97.7
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 1.7e-140 503.4 439 64.9
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 6.2e-135 485.0 437 63.6
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 2.9e-132 476.1 443 62.3
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 3.8e-132 475.7 438 67.1
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 1.6e-130 470.3 392 69.9
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 6.0e-130 468.4 443 61.9
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 1.7e-129 466.8 446 61.9
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 5.6e-128 461.8 446 61.4
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 4.2e-123 445.7 410 62.9
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 7.1e-123 444.9 393 67.9
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.2e-122 444.1 393 67.7
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 7.9e-122 441.4 439 59.0
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 1.3e-121 440.7 376 67.0
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 3.9e-121 439.1 435 64.6
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 6.7e-121 438.3 371 67.4
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 6.7e-121 438.3 419 60.6
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 8.7e-121 438.0 373 70.2
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 2.5e-120 436.4 446 58.1
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 3.3e-120 436.0 419 59.9
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 3.3e-120 436.0 421 61.8
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 9.6e-120 434.5 441 59.6
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 1.3e-119 434.1 373 65.7
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 2.1e-119 433.3 443 61.6
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 8.1e-119 431.4 442 59.0
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 1.1e-118 431.0 418 59.3
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 4.0e-118 429.1 385 67.0
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 5.3e-118 428.7 408 64.2
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 1.2e-117 427.6 440 62.3
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 3.4e-117 426.0 383 64.8
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 4.5e-117 425.6 443 58.9
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 5.8e-117 425.2 377 64.7
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 5.8e-117 425.2 394 64.5
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 1.0e-116 424.5 418 63.2
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 2.9e-116 422.9 401 65.1
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 3.8e-116 422.5 390 62.1
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 1.1e-115 421.0 501 54.5
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 1.2e-114 417.5 441 57.4
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 6.0e-114 415.2 412 58.7
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 7.9e-114 414.8 385 61.3
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 1.0e-113 414.5 388 65.2
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 6.7e-113 411.8 435 60.9
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 1.5e-112 410.6 391 65.0
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 1.5e-112 410.6 430 59.5
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 1.9e-112 410.2 373 62.7
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 5.7e-112 408.7 385 64.2
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 5.7e-112 408.7 436 56.4
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 4.8e-111 405.6 386 59.8
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 6.2e-111 405.2 386 59.3
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 1.4e-110 404.1 370 62.4
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 3.1e-110 402.9 387 61.5
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 1.3e-108 397.5 386 61.4
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 1.7e-108 397.1 443 54.2
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 2.9e-108 396.4 433 54.7
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 1.4e-107 394.0 402 56.7
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 4.2e-107 392.5 378 60.3
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 1.0e-105 387.9 394 58.9
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 1.8e-105 387.1 437 56.3
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 1.1e-104 384.4 430 54.4
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 9.0e-102 374.8 404 56.9
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 3.4e-101 372.9 320 68.1
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 1.0e-100 371.3 403 58.6
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 1.0e-100 371.3 403 58.6
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 1.3e-100 370.9 417 54.7
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.7e-100 370.5 414 54.3
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 1.7e-100 370.5 441 51.2
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 6.5e-100 368.6 325 68.3
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 1.4e-99 367.5 391 61.1
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 3.2e-99 366.3 383 55.6
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 7.2e-99 365.2 389 57.8
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 2.7e-98 363.2 413 54.2
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 1.0e-97 361.3 437 50.8
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 3.0e-97 359.8 403 59.1
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 5.1e-97 359.0 405 54.8
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 2.5e-96 356.7 435 49.9
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 2.4e-94 350.1 436 52.5
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 9.1e-94 348.2 409 57.2
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 5.9e-93 345.5 339 61.9
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 2.9e-92 343.2 409 53.1
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 3.8e-92 342.8 392 52.8
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 9.4e-91 338.2 372 56.7
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 3.6e-90 336.3 385 57.9
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 1.4e-89 334.3 411 52.3
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 1.4e-89 334.3 314 65.3
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 6.7e-89 332.0 378 52.1
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 2.6e-88 330.1 397 57.2
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 3.3e-88 329.7 391 53.5
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 4.4e-88 329.3 376 57.2
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 4.4e-88 329.3 412 54.6
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 7.4e-88 328.6 642 38.3
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 4.8e-87 325.9 391 53.2
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 4.1e-86 322.8 384 56.8
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 5.3e-86 322.4 377 50.9
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 3.5e-85 319.7 390 57.4
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 2.2e-84 317.0 375 54.9
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 6.5e-84 315.5 390 57.2
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 4.2e-83 312.8 324 56.8
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 2.7e-82 310.1 378 50.8
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 6.1e-82 308.9 365 58.1
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.8e-81 307.4 595 39.2
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.8e-81 307.4 595 39.2
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 1.8e-81 307.4 369 51.5
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 2.3e-81 307.0 408 53.7
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 1.8e-78 297.4 336 54.8
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 1.8e-78 297.4 446 49.6
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 3.2e-75 286.6 338 58.3
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 1.4e-73 281.2 312 53.8
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 1.3e-71 274.6 498 41.6
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 2.2e-68 263.8 389 49.9
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 2.9e-68 263.5 390 45.4
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 7.2e-67 258.8 216 64.8
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 2.1e-66 257.3 200 64.5
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 1.4e-62 244.6 365 47.4
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 1.0e-57 228.4 233 53.2
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 1.4e-57 228.0 295 48.5
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 7.0e-54 215.7 438 38.1
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 3.5e-53 213.4 283 56.2
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 6.6e-52 209.1 119 87.4
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 1.9e-46 191.0 102 89.2
MBI06_g45016_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 1.0e-44 185.3 309 44.3
EL10Ac1g00146 Beta vulgaris HOM05D004969 ORTHO05D006085 9.8e-40 168.7 389 40.1
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 2.5e-35 154.1 168 45.2
FAN01G1532 Fragaria x ananassa HOM05D004969 ORTHO05D006085 7.3e-35 152.5 309 41.7
CDE07G1829 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 5.1e-28 129.8 67 94.0
Hund31138 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.4e-25 121.7 153 51.0
FAN15G1524 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.8e-25 121.3 74 83.8
Hund16636 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.5e-24 118.2 265 36.6
MCO11G221 Micromonas commoda HOM05D004969 ORTHO05D006085 2.6e-24 117.5 257 30.4
Oeu000537.1 Olea europaea HOM05D004969 ORTHO05D006085 4.9e-23 113.2 69 85.5
MELO3C025953.2 Cucumis melo HOM05D004969 ORTHO05D006085 1.4e-22 111.7 64 81.2
FvH4_2g09382 Fragaria vesca HOM05D004969 ORTHO05D006085 2.4e-22 110.9 161 46.0
THA.LOC104802935 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 2.4e-22 110.9 257 45.5
Sabra04G0057900 Salix brachista HOM05D004969 ORTHO05D006085 5.4e-22 109.8 156 46.2
AUR62004590 Chenopodium quinoa HOM05D004969 ORTHO05D006085 9.3e-22 109.0 208 40.9
FvH4_2g09383 Fragaria vesca HOM05D004969 ORTHO05D006085 8.4e-15 85.9 47 85.1
Hund14746 Selenicereus undatus HOM05D004969 ORTHO05D006085 2.4e-14 84.3 51 74.5
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 4.3e-11 73.6 65 52.3
Cre12.g490650 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 2.6e-08 64.3 138 26.8
MELO3C033346.2 Cucumis melo HOM05D004969 ORTHO05D044988 5.8e-08 63.2 52 63.5
MD02G1236200 Malus domestica HOM05D005192 ORTHO05D006023 2.2e-07 61.2 55 58.2
HPP92_017745 Vanilla planifolia HOM05D004969 ORTHO05D006085 1.1e-06 58.9 86 43.0
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 3.2e-06 57.4 51 52.9


User provided reference genes

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