Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 1.2e-308 1062.4 540 100.0
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 2.8e-270 934.9 493 98.4
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 5.7e-263 910.6 538 87.7
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 1.2e-225 786.6 438 89.7
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 1.3e-222 776.5 549 70.3
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 4.9e-222 774.6 549 69.8
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 9.9e-215 750.4 411 91.0
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 6.0e-212 741.1 545 67.0
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 2.3e-211 739.2 560 65.9
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 3.0e-211 738.8 561 67.0
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 1.1e-210 736.9 545 67.0
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 1.2e-209 733.4 550 67.3
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 2.2e-206 722.6 553 64.6
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 1.1e-205 720.3 544 65.6
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 9.3e-205 717.2 523 65.8
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 4.6e-204 714.9 544 65.4
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.0e-203 713.8 544 65.1
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 1.3e-201 706.8 559 64.6
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 8.1e-201 704.1 550 65.1
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 1.4e-200 703.4 532 65.6
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 5.3e-200 701.4 562 64.2
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 1.3e-198 696.8 514 66.7
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 3.8e-198 695.3 543 64.3
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 3.8e-198 695.3 549 63.9
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 4.9e-198 694.9 528 63.4
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 6.4e-198 694.5 565 65.0
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 1.1e-194 683.7 550 62.7
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 4.3e-194 681.8 514 68.5
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 7.4e-194 681.0 503 67.2
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 2.1e-193 679.5 509 65.0
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 1.2e-191 673.7 511 66.1
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 1.5e-191 673.3 546 63.0
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 2.0e-191 672.9 537 63.1
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 5.8e-191 671.4 508 65.2
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 1.3e-190 670.2 519 62.4
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.9e-190 669.1 519 63.8
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.9e-190 669.1 519 63.6
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 4.9e-190 668.3 518 62.5
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 4.9e-190 668.3 505 64.6
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.4e-189 666.8 519 63.4
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 1.9e-189 666.4 512 64.1
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 2.4e-189 666.0 537 62.0
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 4.2e-189 665.2 505 64.4
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 7.1e-189 664.5 503 64.8
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.2e-188 663.7 546 60.6
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 1.6e-188 663.3 510 63.5
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 2.1e-188 662.9 510 64.9
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.7e-188 662.5 519 63.4
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 1.3e-187 660.2 548 60.6
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 1.3e-187 660.2 701 52.4
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 3.9e-187 658.7 561 64.5
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 6.7e-187 657.9 504 65.1
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 1.5e-186 656.8 506 63.4
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 5.6e-186 654.8 497 64.0
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 9.6e-186 654.1 537 59.2
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 1.3e-185 653.7 549 59.9
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 1.6e-185 653.3 507 63.3
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 1.6e-185 653.3 548 60.8
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 2.8e-185 652.5 513 62.6
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 2.4e-184 649.4 511 63.4
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 3.4e-183 645.6 508 61.6
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 4.9e-182 641.7 543 60.2
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 3.2e-181 639.0 556 60.4
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 5.5e-181 638.3 566 58.3
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 5.5e-181 638.3 518 60.8
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 9.3e-181 637.5 557 60.1
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 2.3e-179 632.9 551 59.0
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 1.4e-176 623.6 505 62.8
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 4.1e-176 622.1 555 57.5
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 6.9e-176 621.3 514 59.5
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 1.2e-175 620.5 523 59.8
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 1.5e-175 620.2 502 62.2
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 2.6e-175 619.4 544 59.4
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 3.4e-175 619.0 564 57.4
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 5.9e-175 618.2 511 61.4
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 1.0e-174 617.5 313 98.1
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 2.9e-174 615.9 542 59.4
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 1.9e-173 613.2 511 59.1
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 5.5e-173 611.7 546 57.3
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 9.3e-173 610.9 576 54.5
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 1.8e-171 606.7 543 56.7
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 2.3e-171 606.3 546 57.7
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 2.3e-171 606.3 559 57.6
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 6.9e-168 594.7 546 56.8
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 2.6e-167 592.8 544 56.4
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 3.4e-167 592.4 542 56.1
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 2.7e-164 582.8 567 54.5
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 2.2e-161 573.2 517 56.5
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 1.2e-159 567.4 516 56.8
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 7.7e-159 564.7 517 55.9
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 1.7e-158 563.5 518 56.4
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 1.7e-158 563.5 513 56.1
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 2.2e-158 563.1 578 52.1
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 2.2e-158 563.1 513 56.1
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 6.5e-158 561.6 311 90.7
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 1.1e-157 560.8 517 55.7
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 1.1e-157 560.8 517 55.7
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 3.0e-155 552.7 518 56.2
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 8.8e-155 551.2 526 54.8
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.0e-154 550.1 710 46.3
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 2.8e-153 546.2 561 52.2
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 3.7e-153 545.8 546 53.5
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 7.7e-151 538.1 552 54.2
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 2.3e-147 526.6 538 52.0
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 1.0e-142 511.1 485 54.2
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 8.6e-134 481.5 441 56.7
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 4.7e-132 475.7 527 49.3
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 1.4e-128 464.2 339 69.3
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 2.9e-126 456.4 362 64.9
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 4.0e-123 446.0 415 54.5
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 6.4e-105 385.6 214 95.3
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 1.1e-101 374.8 360 54.7
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 7.3e-101 372.1 351 56.7
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 2.1e-100 370.5 375 53.1
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 6.2e-100 369.0 319 60.8
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 2.0e-98 364.0 236 82.2
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 1.1e-96 358.2 521 38.0
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 5.6e-93 345.9 534 38.4
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 2.0e-90 337.4 532 37.0
SMO367G1304 Selaginella moellendorffii HOM05D004567 ORTHO05D005726 4.2e-88 329.7 532 37.0
AagrBONN_evm.TU.Sc2ySwM_228.3324 Anthoceros agrestis HOM05D004567 ORTHO05D005726 6.6e-86 322.4 527 36.4
SEGI_15833 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 6.4e-81 305.8 330 47.9
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 9.3e-80 302.0 336 50.6
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 1.2e-79 301.6 385 44.9
BraA06t23566Z Brassica rapa HOM05D004567 ORTHO05D005726 8.2e-60 235.7 147 76.9
Oeu029992.1 Olea europaea HOM05D004567 ORTHO05D005726 2.4e-59 234.2 151 74.2
Oeu029994.1 Olea europaea HOM05D004567 ORTHO05D005726 1.1e-56 225.3 220 56.4
Duzib248G1520 Durio zibethinus HOM05D004567 ORTHO05D005726 6.1e-55 219.5 134 76.1
Cfa022169 Carpinus fangiana HOM05D004567 ORTHO05D005726 1.8e-54 218.0 132 75.0
unitig_44.g31559 Utricularia gibba HOM05D004567 ORTHO05D005726 1.8e-54 218.0 140 72.1
C06p05100 Brassica napus HOM05D004567 ORTHO05D005726 3.9e-54 216.9 167 65.9
ClCG10G008380 Citrullus lanatus HOM05D004567 ORTHO05D005726 7.9e-47 192.6 104 82.7
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 2.1e-39 167.9 583 25.9
Rhsim06G0125500 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.2e-36 157.9 160 55.6
Rhsim04G0129600 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.5e-32 145.2 99 69.7
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 1.0e-30 139.0 170 46.5
Rhsim06G0125600 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.7e-25 121.7 83 68.7
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.5e-21 108.6 93 55.9
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 7.0e-19 99.8 95 49.5
Rhsim06G0125400 Rhododendron simsii HOM05D004567 ORTHO05D005726 9.1e-19 99.4 53 83.0
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 7.7e-18 96.3 113 47.8
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.9e-16 91.7 86 53.5
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 1.2e-15 89.0 105 50.5
TAR623G0420 Trochodendron aralioides HOM05D004567 ORTHO05D037809 8.0e-15 86.3 148 41.2
QL01p003984 Quercus lobata HOM05D004567 ORTHO05D000318 8.9e-14 82.8 60 55.0
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.3e-12 79.0 88 50.0
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 4.9e-12 77.0 77 51.9
Sed0023875 Sechium edule HOM05D004567 ORTHO05D005726 3.5e-10 70.9 90 41.1
SEGI_26710 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 1.3e-09 68.9 136 34.6
SEGI_29421 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 3.6e-07 60.8 91 33.0
FvH4_7g08791 Fragaria vesca HOM05D004567 ORTHO05D045614 6.8e-06 56.6 44 61.4


User provided reference genes

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