Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 4.7e-106 387.9 198 100.0
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 8.9e-105 383.6 198 98.5
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 1.1e-94 350.1 195 93.8
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.9e-51 206.5 181 68.0
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 1.1e-49 200.7 217 61.8
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 1.9e-46 189.9 216 60.6
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 1.8e-36 156.8 224 50.9
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 3.0e-36 156.0 220 52.3
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 2.2e-34 149.8 162 58.6
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 9.1e-33 144.4 192 49.5
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 1.6e-32 143.7 227 50.2
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 1.7e-31 140.2 154 55.2
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 2.6e-27 126.3 200 44.0
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 7.5e-27 124.8 157 55.4
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 9.7e-27 124.4 155 49.7
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 1.3e-26 124.0 190 47.4
Nitab4.5_0002483g0030 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.3e-26 124.0 167 50.3
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 2.2e-26 123.2 189 42.3
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 8.2e-26 121.3 155 49.0
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.4e-25 120.6 173 43.4
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 2.4e-25 119.8 199 42.7
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 5.3e-25 118.6 141 48.9
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 5.3e-25 118.6 188 44.7
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 5.3e-25 118.6 186 41.4
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 1.6e-24 117.1 195 42.1
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 1.6e-24 117.1 190 40.0
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 1.6e-24 117.1 151 47.7
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 2.7e-24 116.3 153 47.7
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 2.7e-24 116.3 154 48.1
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 3.5e-24 115.9 187 45.5
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 4.5e-24 115.5 195 41.5
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 5.9e-24 115.2 175 45.1
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 2.2e-23 113.2 195 42.1
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 2.2e-23 113.2 142 50.0
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 2.9e-23 112.8 178 43.3
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 3.8e-23 112.5 153 51.6
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 3.8e-23 112.5 151 51.7
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 1.1e-22 110.9 190 41.6
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 1.5e-22 110.5 143 47.6
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 1.5e-22 110.5 190 41.1
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.5e-22 109.8 180 42.2
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 2.5e-22 109.8 141 47.5
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 2.5e-22 109.8 176 44.9
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 3.2e-22 109.4 142 46.5
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 3.2e-22 109.4 200 44.5
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 3.2e-22 109.4 156 48.1
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 9.4e-22 107.8 153 46.4
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 1.2e-21 107.5 166 42.8
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.6e-21 107.1 193 37.8
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 2.1e-21 106.7 186 41.4
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 2.1e-21 106.7 192 42.2
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 2.1e-21 106.7 196 40.8
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 2.7e-21 106.3 154 46.1
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 3.6e-21 105.9 196 40.8
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 3.6e-21 105.9 142 49.3
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.6e-21 105.9 180 41.7
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 3.6e-21 105.9 180 41.7
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 3.6e-21 105.9 141 47.5
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 4.7e-21 105.5 185 40.5
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 8.0e-21 104.8 208 38.9
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 8.0e-21 104.8 201 40.8
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 1.4e-20 104.0 154 42.9
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 1.4e-20 104.0 197 40.6
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 3.0e-20 102.8 142 46.5
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 6.8e-20 101.7 141 46.1
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 8.8e-20 101.3 160 43.1
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.5e-19 100.5 176 41.5
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 1.5e-19 100.5 149 45.6
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 2.0e-19 100.1 151 43.7
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 4.4e-19 99.0 205 41.0
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 2.2e-18 96.7 204 38.7
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 3.7e-18 95.9 158 43.0
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 3.7e-18 95.9 158 43.0
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 3.7e-18 95.9 158 43.0
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 6.3e-18 95.1 168 42.9
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 1.1e-17 94.4 167 41.3
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.4e-17 94.0 170 40.6
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 2.4e-17 93.2 209 37.8
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 2.4e-17 93.2 141 44.0
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 3.1e-17 92.8 166 39.2
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 4.1e-17 92.4 143 43.4
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 4.1e-17 92.4 143 43.4
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 9.1e-17 91.3 189 36.0
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 9.1e-17 91.3 180 39.4
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 1.6e-16 90.5 173 41.0
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 1.6e-16 90.5 182 41.2
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 3.5e-16 89.4 158 41.1
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 5.9e-16 88.6 173 41.6
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 7.7e-16 88.2 173 38.2
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.0e-15 87.8 210 38.6
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 1.3e-15 87.4 148 39.9
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.7e-15 87.0 148 41.2
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 1.7e-15 87.0 165 41.2
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 2.2e-15 86.7 152 40.8
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 2.2e-15 86.7 203 36.9
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 2.2e-15 86.7 155 38.1
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 2.9e-15 86.3 146 41.1
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 6.5e-15 85.1 162 42.0
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 8.5e-15 84.7 142 40.1
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 1.1e-14 84.3 158 38.6
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 1.1e-14 84.3 174 40.8
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 1.1e-14 84.3 174 35.6
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 1.1e-14 84.3 148 37.8
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 1.5e-14 84.0 158 40.5
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 1.9e-14 83.6 179 38.5
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 2.5e-14 83.2 157 42.7
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 2.5e-14 83.2 157 38.2
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 2.5e-14 83.2 154 39.0
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 3.2e-14 82.8 166 39.2
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 4.2e-14 82.4 168 38.7
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 4.2e-14 82.4 183 37.2
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 5.5e-14 82.0 153 37.9
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 5.5e-14 82.0 157 39.5
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 5.5e-14 82.0 203 37.4
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 7.2e-14 81.6 202 35.6
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 9.4e-14 81.3 158 40.5
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 3.6e-13 79.3 193 33.2
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 1.0e-12 77.8 158 37.3
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 1.0e-12 77.8 158 37.3
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 4.0e-12 75.9 138 39.9
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 6.8e-12 75.1 166 38.6
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 8.8e-12 74.7 188 37.8
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 2.0e-11 73.6 159 35.8
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 9.8e-11 71.2 155 31.6
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.7e-10 70.5 187 31.0
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 3.7e-10 69.3 188 31.9
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 4.9e-10 68.9 155 31.6
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 4.9e-10 68.9 119 43.7
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 6.3e-10 68.6 142 38.0
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 1.8e-09 67.0 174 33.3
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 2.4e-09 66.6 130 36.2
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 4.1e-09 65.9 164 34.1
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.2e-08 64.3 160 32.5
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 1.3e-07 60.8 188 30.3
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 6.6e-07 58.5 142 32.4
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 1.5e-06 57.4 171 32.7
HPP92_003138 Vanilla planifolia HOM05D005065 ORTHO05D005944 5.6e-06 55.5 152 33.6
HPP92_006868 Vanilla planifolia HOM05D064031 ORTHO05D005944 5.6e-06 55.5 176 27.8
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 9.5e-06 54.7 188 30.9
ECA232G3441 Erigeron canadensis HOM05D005317 ORTHO05D005146 9.5e-06 54.7 91 39.6


User provided reference genes

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