Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 1.3e-102 376.3 182 100.0
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 6.1e-100 367.5 182 97.3
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 6.1e-100 367.5 182 95.6
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 2.2e-97 359.0 182 93.4
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 4.1e-96 354.8 182 92.9
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 3.4e-95 351.7 182 91.8
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 2.0e-90 335.9 185 85.9
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.5e-85 319.7 161 93.2
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.1e-82 310.1 164 89.0
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 1.6e-76 289.7 177 78.5
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.4e-75 286.6 182 71.4
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 1.7e-73 279.6 180 70.6
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 2.8e-73 278.9 181 70.2
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 6.3e-73 277.7 178 72.5
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 1.8e-72 276.2 181 70.7
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 1.2e-71 273.5 182 68.7
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 5.9e-71 271.2 180 67.2
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 1.3e-70 270.0 181 66.3
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 1.3e-70 270.0 179 69.3
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 2.2e-70 269.2 182 68.7
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 2.2e-70 269.2 180 67.8
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 3.8e-70 268.5 179 68.7
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 8.5e-70 267.3 180 68.3
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 1.5e-69 266.5 181 66.3
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 1.5e-69 266.5 180 65.6
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 2.5e-69 265.8 182 66.5
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 4.2e-69 265.0 182 68.1
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 7.2e-69 264.2 182 66.5
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 1.2e-68 263.5 180 67.2
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 1.2e-68 263.5 180 65.0
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 1.6e-68 263.1 180 67.2
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 2.1e-68 262.7 178 66.3
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 2.7e-68 262.3 180 67.8
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 3.6e-68 261.9 182 66.5
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 6.1e-68 261.2 183 68.3
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 8.0e-68 260.8 180 65.6
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 8.0e-68 260.8 182 64.8
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 8.0e-68 260.8 182 66.5
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 1.0e-67 260.4 182 67.6
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 1.4e-67 260.0 180 66.7
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 4.0e-67 258.5 182 67.6
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 5.2e-67 258.1 182 64.3
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 5.2e-67 258.1 183 68.9
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 8.8e-67 257.3 182 65.9
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 8.8e-67 257.3 180 64.4
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 1.2e-66 256.9 182 64.8
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 1.5e-66 256.5 182 63.2
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-66 256.5 182 63.2
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 2.6e-66 255.8 182 62.6
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.4e-66 255.4 182 63.2
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 4.4e-66 255.0 182 65.4
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 7.5e-66 254.2 181 63.5
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 9.8e-66 253.8 182 64.8
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 9.8e-66 253.8 182 66.5
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.2e-65 252.7 182 62.6
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 2.2e-65 252.7 182 64.8
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.8e-65 252.3 180 62.8
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 2.8e-65 252.3 181 63.0
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 2.8e-65 252.3 206 61.7
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.3e-65 251.1 180 65.6
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 1.1e-64 250.4 181 61.3
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 1.4e-64 250.0 182 62.6
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.8e-64 249.6 179 64.8
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 2.4e-64 249.2 181 63.5
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.1e-64 248.8 174 63.8
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 4.1e-64 248.4 180 62.8
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 9.2e-64 247.3 181 63.5
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 3.5e-63 245.4 180 63.3
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.7e-62 243.0 171 63.2
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 3.8e-62 241.9 189 60.8
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 6.6e-62 241.1 180 63.3
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 6.6e-62 241.1 181 63.0
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 6.6e-62 241.1 182 62.6
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 2.5e-61 239.2 181 61.9
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 2.5e-61 239.2 180 62.2
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 3.3e-61 238.8 181 60.8
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 9.5e-61 237.3 180 61.7
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 1.2e-60 236.9 181 60.2
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 2.1e-60 236.1 180 62.2
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 6.1e-60 234.6 180 61.1
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 1.4e-59 233.4 161 65.8
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 1.8e-59 233.0 178 61.8
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 1.8e-59 233.0 161 65.8
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 2.3e-59 232.6 180 61.1
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 4.0e-59 231.9 180 60.0
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.2e-58 230.3 184 60.3
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 4.9e-57 224.9 181 56.9
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 8.3e-57 224.2 180 58.3
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 1.4e-56 223.4 185 57.8
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 2.4e-56 222.6 180 57.2
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 2.4e-56 222.6 158 61.4
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 5.4e-56 221.5 184 56.5
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 5.9e-55 218.0 161 61.5
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 3.9e-54 215.3 167 58.1
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 6.6e-54 214.5 181 58.0
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 2.1e-52 209.5 180 54.4
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 6.2e-52 208.0 108 90.7
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.3e-51 206.1 160 60.0
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.3e-51 206.1 160 60.6
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 3.1e-51 205.7 141 65.2
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 4.0e-51 205.3 156 59.0
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 8.9e-51 204.1 172 57.0
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 3.4e-50 202.2 162 59.3
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 1.7e-49 199.9 184 53.3
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 3.2e-48 195.7 141 63.8
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 1.0e-46 190.7 142 59.9
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 3.9e-46 188.7 150 67.3
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 3.3e-45 185.7 191 44.5
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 1.6e-44 183.3 141 60.3
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 1.3e-41 173.7 190 44.2
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 1.3e-41 173.7 182 48.4
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 6.4e-41 171.4 185 48.6
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.1e-39 166.4 168 50.6
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 4.6e-39 165.2 165 51.5
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 7.8e-39 164.5 130 57.7
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 8.1e-36 154.5 171 46.2
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 1.2e-34 150.6 112 59.8
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 1.7e-33 146.7 111 55.9
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 4.9e-33 145.2 181 45.9
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 8.4e-33 144.4 91 72.5
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 5.4e-32 141.7 91 71.4
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.1e-32 141.4 91 71.4
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.6e-31 140.2 91 70.3
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.1e-31 139.8 69 91.3
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 4.6e-31 138.7 90 68.9
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 3.0e-30 136.0 72 83.3
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 6.6e-30 134.8 106 55.7
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 8.6e-30 134.4 156 44.9
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.1e-29 134.0 74 85.1
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 1.1e-29 134.0 111 54.1
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 1.5e-29 133.7 92 63.0
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 1.6e-28 130.2 99 63.6
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 3.6e-28 129.0 96 63.5
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.7e-25 120.2 264 30.3
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 4.2e-24 115.5 133 43.6
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 5.1e-22 108.6 180 35.6
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 1.5e-21 107.1 76 61.8
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.9e-21 106.7 67 65.7
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.5e-21 106.3 67 68.7
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 9.6e-21 104.4 53 90.6
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.6e-20 102.4 67 64.2
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 5.8e-18 95.1 88 51.1
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 1.7e-17 93.6 72 58.3
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 2.2e-17 93.2 224 29.0
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 6.4e-17 91.7 190 31.1
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 1.4e-16 90.5 89 50.6
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 2.3e-14 83.2 63 58.7
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 8.7e-14 81.3 77 48.1
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-13 80.9 84 52.4
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 1.1e-11 74.3 59 57.6
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 1.4e-11 73.9 48 62.5
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.8e-10 68.6 55 56.4
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 1.2e-07 60.8 66 50.0
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 2.1e-07 60.1 60 48.3
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 6.0e-07 58.5 37 70.3


User provided reference genes

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