Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 1.1e-203 713.0 350 100.0
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 9.9e-200 699.9 349 98.0
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.2e-149 533.5 335 77.0
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 4.7e-149 531.6 349 73.6
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 2.5e-142 509.2 343 73.2
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 6.1e-141 504.6 343 73.5
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.5e-139 500.0 278 87.8
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 2.0e-139 499.6 350 71.1
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 1.4e-137 493.4 351 70.4
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.4e-137 493.4 282 86.5
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 4.1e-137 491.9 343 72.0
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 4.5e-136 488.4 357 67.8
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 5.0e-135 485.0 330 71.5
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 1.1e-134 483.8 346 68.8
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 9.5e-134 480.7 324 73.8
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 4.7e-133 478.4 350 69.4
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 1.0e-132 477.2 350 69.7
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 1.0e-132 477.2 324 71.0
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 3.0e-132 475.7 245 92.7
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 3.0e-132 475.7 351 67.8
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 4.0e-132 475.3 373 65.7
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 1.3e-130 470.3 335 68.1
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.2e-130 469.5 328 69.5
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 2.2e-130 469.5 346 68.2
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.2e-130 469.5 321 70.7
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.2e-130 469.5 321 70.7
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 2.8e-130 469.2 329 70.2
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 4.9e-130 468.4 351 67.8
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 8.3e-130 467.6 329 69.0
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.8e-129 466.5 310 72.6
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 1.8e-129 466.5 308 74.0
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 2.4e-129 466.1 328 70.1
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 4.1e-129 465.3 340 67.9
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 7.0e-129 464.5 328 68.6
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 7.0e-129 464.5 328 68.6
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.6e-128 463.4 349 66.8
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 5.9e-128 461.5 342 67.8
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 7.8e-128 461.1 332 68.1
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 1.0e-127 460.7 313 71.9
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 1.0e-127 460.7 349 66.8
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.3e-127 460.3 343 67.6
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 1.3e-127 460.3 331 68.3
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 1.7e-127 459.9 348 66.4
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 1.7e-127 459.9 325 68.6
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 2.3e-127 459.5 349 66.5
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 2.9e-127 459.1 348 66.4
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 8.6e-127 457.6 350 65.1
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 1.1e-126 457.2 346 66.2
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 2.5e-126 456.1 347 66.0
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.6e-125 453.4 349 65.9
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 2.1e-125 453.0 321 67.3
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 6.1e-125 451.4 328 67.7
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 1.0e-124 450.7 340 66.8
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 5.2e-124 448.4 333 67.0
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 2.6e-123 446.0 401 58.9
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 4.4e-123 445.3 268 79.5
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 9.8e-123 444.1 370 63.2
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 9.8e-123 444.1 370 63.2
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 1.7e-122 443.4 332 67.2
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 2.2e-122 443.0 318 67.9
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 2.9e-122 442.6 331 67.4
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 6.4e-122 441.4 345 65.8
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 8.3e-122 441.0 312 68.6
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 1.1e-121 440.7 331 67.1
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.1e-121 440.7 330 65.8
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.4e-121 440.3 344 64.0
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 1.4e-121 440.3 396 59.1
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 1.9e-121 439.9 340 65.0
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 2.4e-121 439.5 316 67.7
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 3.2e-121 439.1 341 65.7
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 4.1e-121 438.7 341 64.5
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 4.1e-121 438.7 346 66.5
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 1.6e-120 436.8 336 66.4
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 1.3e-119 433.7 311 66.9
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 3.9e-119 432.2 341 66.6
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 1.9e-118 429.9 311 67.8
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 2.5e-118 429.5 320 66.6
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 7.3e-118 427.9 320 66.6
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 1.6e-117 426.8 311 68.5
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 2.1e-117 426.4 306 69.6
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 4.7e-117 425.2 317 66.2
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 6.8e-116 421.4 334 65.6
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 8.9e-116 421.0 299 70.6
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 3.4e-115 419.1 394 57.4
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 7.5e-115 417.9 324 64.8
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 7.5e-115 417.9 330 63.6
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 2.9e-114 416.0 337 59.6
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 2.4e-113 412.9 319 65.5
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 5.4e-113 411.8 331 63.7
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 2.7e-112 409.5 331 64.7
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 6.6e-111 404.8 260 73.5
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 9.5e-110 401.0 263 72.2
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 4.9e-106 388.7 252 72.6
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 6.4e-106 388.3 302 64.2
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 3.5e-104 382.5 329 59.3
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 6.6e-103 378.3 411 50.9
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 8.9e-100 367.9 333 59.2
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.7e-98 363.6 279 65.9
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.7e-98 363.6 318 57.2
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 6.4e-98 361.7 289 62.3
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 1.4e-97 360.5 331 56.5
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 2.4e-97 359.8 310 59.0
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 2.1e-96 356.7 327 59.3
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 1.7e-95 353.6 320 57.8
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 3.0e-95 352.8 339 56.0
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 5.6e-94 348.6 314 58.3
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 7.3e-94 348.2 319 57.4
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 2.1e-93 346.7 339 57.5
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 2.8e-93 346.3 208 75.0
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.7e-93 345.5 338 57.7
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 1.1e-92 344.4 319 58.0
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.0e-92 342.4 319 58.9
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 5.8e-91 338.6 340 55.3
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.9e-90 335.5 321 58.3
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.4e-89 333.2 316 53.2
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 1.2e-88 330.9 227 71.4
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 1.1e-86 324.3 323 52.9
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 1.1e-86 324.3 390 49.7
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 2.8e-85 319.7 247 64.0
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 4.9e-82 308.9 320 55.0
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.4e-81 307.4 246 61.4
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 7.4e-78 295.0 260 60.4
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 3.4e-75 286.2 276 54.0
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.1e-73 281.2 306 49.0
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 8.4e-66 255.0 306 45.1
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 5.5e-65 252.3 305 45.9
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 2.1e-64 250.4 305 45.2
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.6e-64 249.2 301 44.5
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 2.4e-60 236.9 151 76.8
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.5e-59 234.2 240 52.5
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 7.2e-57 225.3 149 75.2
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 8.2e-53 211.8 133 72.9
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 3.4e-51 206.5 251 43.0
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 5.0e-50 202.6 243 44.0
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 8.5e-50 201.8 334 39.8
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 1.4e-49 201.1 209 45.0
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 5.5e-49 199.1 160 59.4
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 7.2e-49 198.7 113 85.0
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 2.6e-43 180.3 301 35.9
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 1.4e-39 167.9 250 42.0
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 3.9e-39 166.4 222 41.0
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 3.5e-35 153.3 88 80.7
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 1.0e-34 151.8 239 36.4
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 2.9e-34 150.2 280 33.9
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.6e-27 127.9 373 27.6
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.9e-26 123.6 217 35.0
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.5e-25 120.6 301 29.9
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 4.2e-25 119.8 72 79.2
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 4.2e-25 119.8 72 79.2
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 9.4e-25 118.6 72 77.8
Nitab4.5_0000159g0060 Nicotiana tabacum HOM05D056068 ORTHO05D005020 2.1e-24 117.5 81 75.3
Nitab4.5_0003518g0040 Nicotiana tabacum HOM05D056068 ORTHO05D005020 8.8e-23 112.1 81 74.1
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 9.8e-22 108.6 303 30.7
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 1.3e-21 108.2 113 41.6
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 2.2e-21 107.5 114 39.5
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.7e-21 106.7 163 37.4
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 8.3e-21 105.5 84 63.1
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.8e-20 104.4 153 41.8
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 5.4e-20 102.8 211 34.1
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 9.1e-20 102.1 306 26.8
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.7e-18 97.8 265 26.8
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 1.6e-16 91.3 60 71.7
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 2.4e-12 77.4 79 53.2
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.3e-10 71.6 99 44.4


User provided reference genes

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