Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g008580 Solanum pennellii HOM05D005489 ORTHO05D006629 2.3e-75 285.4 137 100.0
Solyc11g013550.2 Solanum lycopersicum HOM05D005489 ORTHO05D006629 5.1e-75 284.3 137 99.3
PGSC0003DMG400027793 Solanum tuberosum HOM05D005489 ORTHO05D006629 6.2e-73 277.3 137 97.1
CAN.G255.20 Capsicum annuum HOM05D005489 ORTHO05D006629 1.5e-71 272.7 137 94.9
Peaxi162Scf01011g00023 Petunia axillaris HOM05D005489 ORTHO05D006629 1.3e-70 269.6 137 94.2
CDE06G1809 Ceratophyllum demersum HOM05D005489 ORTHO05D006629 4.2e-69 264.6 135 91.1
HanXRQChr09g0260151 Helianthus annuus HOM05D005489 ORTHO05D006629 4.2e-69 264.6 137 90.5
TWI56G0906 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 1.6e-68 262.7 135 89.6
Hma1.2p1_0221F.1_g093180 Hydrangea macrophylla HOM05D005489 ORTHO05D006629 2.1e-68 262.3 135 89.6
TAR628G1556 Trochodendron aralioides HOM05D005489 ORTHO05D006629 2.1e-68 262.3 135 89.6
Aqoxy5G02479 Aquilegia oxysepala HOM05D005489 ORTHO05D006629 2.7e-68 261.9 135 89.6
Ciclev10002818m.g Citrus clementina HOM05D005489 ORTHO05D006629 2.7e-68 261.9 135 88.9
HanXRQChr11g0326271 Helianthus annuus HOM05D005489 ORTHO05D006629 4.6e-68 261.2 135 90.4
Lsat_1_v5_gn_4_135561 Lactuca sativa HOM05D005489 ORTHO05D006629 4.6e-68 261.2 135 90.4
PGR044G1289 Punica granatum HOM05D005489 ORTHO05D006629 6.0e-68 260.8 135 88.1
Atru.chr13.1318 Acer truncatum HOM05D005489 ORTHO05D006629 7.9e-68 260.4 135 89.6
Atru.chr13.1362 Acer truncatum HOM05D005489 ORTHO05D006629 7.9e-68 260.4 135 89.6
COL.COLO4_32811 Corchorus olitorius HOM05D005489 ORTHO05D006629 1.0e-67 260.0 135 88.1
TAR197G0004 Trochodendron aralioides HOM05D005489 ORTHO05D006629 1.0e-67 260.0 135 88.1
GSVIVG01008943001 Vitis vinifera HOM05D005489 ORTHO05D006629 1.0e-67 260.0 135 88.1
Thecc.08G116800 Theobroma cacao HOM05D005489 ORTHO05D006629 1.8e-67 259.2 135 88.1
Gohir.A01G187700 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.3e-67 258.8 135 88.9
Manes.18G073000 Manihot esculenta HOM05D005489 ORTHO05D006629 3.0e-67 258.5 135 87.4
Sed0015736 Sechium edule HOM05D005489 ORTHO05D006629 3.0e-67 258.5 135 87.4
TWI12G0464 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 3.0e-67 258.5 135 87.4
CiPaw.05G228700 Carya illinoinensis HOM05D005489 ORTHO05D006629 3.9e-67 258.1 135 87.4
Gohir.A02G075000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 5.1e-67 257.7 135 86.7
Dinv26716 Davidia involucrata HOM05D005489 ORTHO05D006629 6.7e-67 257.3 135 87.4
Gohir.A06G041000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 6.7e-67 257.3 135 86.7
Gohir.D06G041900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 6.7e-67 257.3 135 86.7
Gorai.010G047100 Gossypium raimondii HOM05D005489 ORTHO05D006629 6.7e-67 257.3 135 86.7
MELO3C022783.2 Cucumis melo HOM05D005489 ORTHO05D006629 8.7e-67 256.9 135 86.7
Gohir.D02G082100 Gossypium hirsutum HOM05D005489 ORTHO05D006629 8.7e-67 256.9 135 86.7
MSTRG.1486 Avicennia marina HOM05D005489 ORTHO05D006629 1.5e-66 256.1 135 88.9
Dinv27383 Davidia involucrata HOM05D005489 ORTHO05D006629 1.9e-66 255.8 135 86.7
Nn1g08538 Nelumbo nucifera HOM05D005489 ORTHO05D006629 1.9e-66 255.8 135 85.9
VMungo1127G1458 Vigna mungo HOM05D005489 ORTHO05D006629 1.9e-66 255.8 135 86.7
Duzib041G0073 Durio zibethinus HOM05D005489 ORTHO05D006629 2.5e-66 255.4 135 86.7
MD15G1359200 Malus domestica HOM05D005489 ORTHO05D006629 2.5e-66 255.4 135 87.4
THA.LOC104813132 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 2.5e-66 255.4 135 86.7
SGA_v2.0_scaffold118G32436 Striga asiatica HOM05D005489 ORTHO05D006629 3.3e-66 255.0 135 88.1
SGA_v2.0_scaffold24G10504 Striga asiatica HOM05D005489 ORTHO05D006629 4.3e-66 254.6 135 88.1
THA.LOC104806808 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 4.3e-66 254.6 135 86.7
ECA232G0625 Erigeron canadensis HOM05D005489 ORTHO05D006629 7.4e-66 253.8 131 91.6
Phvul.011G165300 Phaseolus vulgaris HOM05D005489 ORTHO05D006629 7.4e-66 253.8 135 85.9
QL12p035283 Quercus lobata HOM05D005489 ORTHO05D006629 7.4e-66 253.8 135 86.7
SalBow1G3581 Salvia bowleyana HOM05D005489 ORTHO05D006629 7.4e-66 253.8 137 86.9
FvH4_5g38950 Fragaria vesca HOM05D005489 ORTHO05D006629 9.6e-66 253.4 135 86.7
FAN04G1587 Fragaria x ananassa HOM05D005489 ORTHO05D006629 9.6e-66 253.4 135 86.7
FAN08G2064 Fragaria x ananassa HOM05D005489 ORTHO05D006629 9.6e-66 253.4 135 86.7
FAN18G3455 Fragaria x ananassa HOM05D005489 ORTHO05D006629 9.6e-66 253.4 135 86.7
Nn5g27958 Nelumbo nucifera HOM05D005489 ORTHO05D006629 9.6e-66 253.4 133 87.2
PSO017G5790 Papaver somniferum HOM05D005489 ORTHO05D006629 9.6e-66 253.4 135 87.4
PSO170G3859 Papaver somniferum HOM05D005489 ORTHO05D006629 9.6e-66 253.4 135 87.4
BcaB03g13640 Brassica carinata HOM05D005489 ORTHO05D006629 1.3e-65 253.1 135 85.2
A05p23180 Brassica napus HOM05D005489 ORTHO05D006629 1.3e-65 253.1 135 85.2
C05p36630 Brassica napus HOM05D005489 ORTHO05D006629 1.3e-65 253.1 135 85.2
BraA05t21185Z Brassica rapa HOM05D005489 ORTHO05D006629 1.3e-65 253.1 135 85.2
Sabra02G0070300 Salix brachista HOM05D005489 ORTHO05D006629 1.3e-65 253.1 135 85.9
CARHR034780 Cardamine hirsuta HOM05D005489 ORTHO05D006629 2.1e-65 252.3 135 83.7
AL1G51120 Arabidopsis lyrata HOM05D005489 ORTHO05D006629 2.8e-65 251.9 135 84.4
AT1G36980 Arabidopsis thaliana HOM05D005489 ORTHO05D006629 2.8e-65 251.9 135 84.4
EL10Ac1g00039 Beta vulgaris HOM05D005489 ORTHO05D006629 2.8e-65 251.9 135 86.7
Carub.0001s3388 Capsella rubella HOM05D005489 ORTHO05D006629 2.8e-65 251.9 135 85.2
Thhalv10005115m.g Eutrema salsugineum HOM05D005489 ORTHO05D006629 2.8e-65 251.9 135 84.4
Duzib093G1687 Durio zibethinus HOM05D005489 ORTHO05D006629 3.7e-65 251.5 135 85.9
Glyma.04G253700 Glycine max HOM05D005489 ORTHO05D006629 3.7e-65 251.5 135 86.7
Sp1g31180 Schrenkiella parvula HOM05D005489 ORTHO05D006629 3.7e-65 251.5 135 84.4
Ca_25761_v3 Cicer arietinum L. HOM05D005489 ORTHO05D006629 4.8e-65 251.1 135 85.9
Glyma.06G108600 Glycine max HOM05D005489 ORTHO05D006629 6.2e-65 250.8 135 86.7
Medtr3g073300 Medicago truncatula HOM05D005489 ORTHO05D006629 6.2e-65 250.8 135 85.2
Potri.002G089300 Populus trichocarpa HOM05D005489 ORTHO05D006629 6.2e-65 250.8 135 84.4
RcHm_v2.0_Chr7g0240921 Rosa chinensis HOM05D005489 ORTHO05D006629 8.1e-65 250.4 135 84.4
Prupe.1G506000 Prunus persica HOM05D005489 ORTHO05D006629 1.1e-64 250.0 135 85.9
arahy.Tifrunner.gnm1.ann1.204R5H Arachis hypogaea HOM05D005489 ORTHO05D006629 1.4e-64 249.6 135 84.4
arahy.Tifrunner.gnm1.ann1.64ZY3M Arachis hypogaea HOM05D005489 ORTHO05D006629 1.4e-64 249.6 135 84.4
TPR.G32948 Trifolium pratense HOM05D005489 ORTHO05D006629 1.8e-64 249.2 135 84.4
Lj1g0000272 Lotus japonicus HOM05D005489 ORTHO05D006629 3.1e-64 248.4 135 85.9
Psat5g135600 Pisum sativum HOM05D005489 ORTHO05D006629 4.0e-64 248.1 135 84.4
Lalb_Chr08g0241711 Lupinus albus HOM05D005489 ORTHO05D006629 5.3e-64 247.7 135 84.4
Nitab4.5_0000051g0120 Nicotiana tabacum HOM05D005489 ORTHO05D006629 5.3e-64 247.7 124 95.2
Migut.C01190 Erythranthe guttata HOM05D005489 ORTHO05D006629 9.0e-64 246.9 135 83.0
Lalb_Chr11g0065701 Lupinus albus HOM05D005489 ORTHO05D006629 1.5e-63 246.1 135 83.7
MBI06_g01046_MAGBIO Magnolia biondii HOM05D005489 ORTHO05D006629 2.0e-63 245.7 135 85.2
Potri.005G171901 Populus trichocarpa HOM05D005489 ORTHO05D006629 2.0e-63 245.7 135 83.0
Oeu032962.1 Olea europaea HOM05D005489 ORTHO05D006629 3.4e-63 245.0 135 85.9
Migut.N03320 Erythranthe guttata HOM05D005489 ORTHO05D006629 7.6e-63 243.8 135 85.9
Oeu043793.1 Olea europaea HOM05D005489 ORTHO05D006629 9.9e-63 243.4 137 83.9
Nitab4.5_0002332g0020 Nicotiana tabacum HOM05D005489 ORTHO05D006629 2.2e-62 242.3 119 95.8
Sc01g0001550 Simmondsia chinensis HOM05D005489 ORTHO05D006629 1.9e-61 239.2 124 89.5
DCAR_014792 Daucus carota HOM05D005489 ORTHO05D006629 3.5e-60 235.0 131 83.2
Aa31LG6G9070 Aethionema arabicum HOM05D005489 ORTHO05D006629 6.0e-60 234.2 124 85.5
Rhsim06G0109100 Rhododendron simsii HOM05D005489 ORTHO05D006629 7.9e-60 233.8 124 87.9
Hund16821 Selenicereus undatus HOM05D005489 ORTHO05D006629 3.0e-59 231.9 129 82.9
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 3.9e-59 231.5 130 83.8
Gorai.002G220400 Gossypium raimondii HOM05D005489 ORTHO05D006629 5.1e-59 231.1 124 87.1
Cc10_g10440 Coffea canephora HOM05D005489 ORTHO05D006629 1.6e-57 226.1 124 88.7
HPP92_005944 Vanilla planifolia HOM05D005489 ORTHO05D006629 1.6e-57 226.1 135 77.8
HPP92_002297 Vanilla planifolia HOM05D005489 ORTHO05D006629 2.8e-57 225.3 135 77.0
Zm00001eb100550 Zea mays HOM05D005489 ORTHO05D006629 4.8e-57 224.6 136 77.9
Gohir.D01G181900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 1.8e-56 222.6 124 85.5
Os02g0566900 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 2.4e-56 222.2 138 73.9
Os09g0453000 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 2.4e-56 222.2 136 77.9
Actinidia29431 Actinidia chinensis HOM05D005489 ORTHO05D006629 1.2e-55 219.9 137 74.5
Zm00001eb244520 Zea mays HOM05D005489 ORTHO05D006629 1.5e-55 219.5 134 74.6
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 2.2e-54 215.7 205 55.6
AagrBONN_evm.TU.Sc2ySwM_344.2049 Anthoceros agrestis HOM05D005489 ORTHO05D006629 1.9e-53 212.6 137 68.6
SEGI_34511 Sequoiadendron giganteum HOM05D005489 ORTHO05D006629 3.2e-53 211.8 138 72.5
BolC5t32398H Brassica oleracea HOM05D005489 ORTHO05D006629 3.5e-52 208.4 120 80.8
SMO116G0262 Selaginella moellendorffii HOM05D005489 ORTHO05D006629 1.3e-51 206.5 134 70.9
BcaC05g27681 Brassica carinata HOM05D005489 ORTHO05D006629 2.5e-50 202.2 121 80.2
Pp3c2_28270 Physcomitrium patens HOM05D005489 ORTHO05D006629 7.7e-47 190.7 138 63.0
Mapoly0004s0020 Marchantia polymorpha HOM05D005489 ORTHO05D006629 1.3e-46 189.9 153 61.4
Pp3c1_10200 Physcomitrium patens HOM05D005489 ORTHO05D006629 1.7e-46 189.5 138 61.6
CBR_g30829 Chara braunii HOM05D005489 ORTHO05D006629 7.9e-44 180.6 128 64.1
Gorai.005G092000 Gossypium raimondii HOM05D005489 ORTHO05D006629 2.2e-41 172.6 91 89.0
Sabra05G0129400 Salix brachista HOM05D005489 ORTHO05D006629 2.0e-39 166.0 125 68.0
Haze_00523 Corylus avellana HOM05D005489 ORTHO05D006629 4.2e-37 158.3 76 90.8
CANSAT25G2554 Cannabis sativa HOM05D005489 ORTHO05D006629 7.2e-37 157.5 92 76.1
TAR127G0005 Trochodendron aralioides HOM05D005489 ORTHO05D006629 1.2e-36 156.8 75 89.3
Cfa015959 Carpinus fangiana HOM05D005489 ORTHO05D006629 2.1e-36 156.0 131 61.1
ClCG03G009110 Citrullus lanatus HOM05D005489 ORTHO05D006629 5.1e-35 151.4 74 87.8
CsaV3_5G023520 Cucumis sativus L. HOM05D005489 ORTHO05D006629 5.1e-35 151.4 74 87.8
DCAR_023128 Daucus carota HOM05D005489 ORTHO05D006629 1.5e-34 149.8 75 85.3
BcaC05g27682 Brassica carinata HOM05D005489 ORTHO05D006629 2.6e-34 149.1 74 85.1
C05p36640 Brassica napus HOM05D005489 ORTHO05D006629 2.6e-34 149.1 74 85.1
ATR0121G008 Amborella trichopoda HOM05D005489 ORTHO05D006629 9.7e-34 147.1 74 86.5
Nn2g15248 Nelumbo nucifera HOM05D005489 ORTHO05D006629 2.9e-30 135.6 73 78.1
Sopen11g008620 Solanum pennellii HOM05D000147 ORTHO05D004360 2.1e-28 129.4 74 87.8
Oeu050268.1 Olea europaea HOM05D005489 ORTHO05D006629 2.7e-28 129.0 76 77.6
AUR62004694 Chenopodium quinoa HOM05D005489 ORTHO05D006629 3.9e-27 125.2 140 53.6
Cre01.g042950 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 2.2e-25 119.4 131 42.7
PRCOL_00003843 Prasinoderma coloniale HOM05D005489 ORTHO05D006629 4.2e-21 105.1 117 47.9
Eucgr.F04378 Eucalyptus grandis HOM05D005489 ORTHO05D006629 1.1e-16 90.5 47 80.9
SalBow7G4082 Salvia bowleyana HOM05D005489 ORTHO05D006629 7.0e-16 87.8 165 38.8
Cre03.g159300 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 9.1e-16 87.4 127 38.6
ClCG03G009140 Citrullus lanatus HOM05D005489 ORTHO05D006629 1.6e-15 86.7 50 86.0
Solyc11g013660.1 Solanum lycopersicum HOM05D005489 ORTHO05D006629 8.5e-14 80.9 70 65.7
SalBow7G1125 Salvia bowleyana HOM05D002998 ORTHO05D006629 7.5e-10 67.8 35 80.0
Os08g0469200 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 3.7e-09 65.5 67 52.2
PRCOL_00003098 Prasinoderma coloniale HOM05D001685 ORTHO05D007488 5.9e-07 58.2 141 30.5


User provided reference genes

Program Settings