Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 5.8e-124 447.6 230 100.0
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 3.2e-122 441.8 228 98.2
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 1.8e-120 436.0 228 97.4
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 1.9e-114 416.0 228 91.7
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 7.1e-114 414.1 228 90.8
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 2.2e-110 402.5 228 89.0
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.2e-108 396.7 228 87.3
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 1.5e-100 369.8 227 79.7
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 2.6e-100 369.0 227 81.5
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 7.7e-100 367.5 227 78.9
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 2.9e-99 365.5 227 80.2
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 3.8e-99 365.2 228 81.1
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.2e-97 360.1 228 76.3
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 1.2e-97 360.1 228 77.2
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 1.2e-97 360.1 220 80.0
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 1.6e-97 359.8 228 77.6
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 3.6e-97 358.6 227 77.1
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.0e-96 357.1 227 78.4
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 3.0e-96 355.5 228 76.3
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 5.1e-96 354.8 228 75.4
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 1.5e-95 353.2 226 76.1
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 1.5e-95 353.2 227 77.1
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 2.0e-95 352.8 227 76.2
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 3.3e-95 352.1 228 75.4
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 4.4e-95 351.7 226 76.1
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 9.7e-95 350.5 228 74.1
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 1.3e-94 350.1 227 78.0
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 1.3e-94 350.1 227 75.8
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.7e-94 349.7 228 75.0
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 1.7e-94 349.7 227 75.3
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.7e-94 349.7 228 75.4
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 2.8e-94 349.0 224 77.7
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.8e-94 349.0 226 74.8
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 3.7e-94 348.6 227 73.6
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 4.8e-94 348.2 228 74.1
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 4.8e-94 348.2 228 75.0
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 8.2e-94 347.4 227 74.4
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 8.2e-94 347.4 226 74.3
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 8.2e-94 347.4 227 76.2
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 1.1e-93 347.1 227 75.8
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 1.4e-93 346.7 227 75.8
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.8e-93 346.3 228 75.0
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 3.1e-93 345.5 227 75.3
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 9.1e-93 344.0 227 73.6
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 9.1e-93 344.0 227 73.1
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 9.1e-93 344.0 226 74.8
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 1.2e-92 343.6 224 76.8
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 1.2e-92 343.6 224 75.4
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 1.5e-92 343.2 226 75.7
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 2.6e-92 342.4 228 72.4
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 4.5e-92 341.7 228 73.2
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 7.7e-92 340.9 226 77.4
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 1.0e-91 340.5 224 75.0
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 1.7e-91 339.7 225 75.1
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 1.7e-91 339.7 225 73.8
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 1.7e-91 339.7 228 73.7
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 2.2e-91 339.3 228 73.2
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 2.9e-91 339.0 227 74.4
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 3.8e-91 338.6 226 73.9
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.0e-91 338.2 227 74.0
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 5.0e-91 338.2 224 74.1
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 6.5e-91 337.8 219 76.3
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 1.4e-90 336.7 227 69.2
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 1.4e-90 336.7 227 73.6
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 1.9e-90 336.3 227 73.6
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 5.5e-90 334.7 227 73.6
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 9.4e-90 334.0 219 76.3
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 9.4e-90 334.0 227 69.6
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 2.1e-89 332.8 226 73.9
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 2.1e-89 332.8 227 72.7
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 4.7e-89 331.6 264 64.0
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 4.7e-89 331.6 228 71.5
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 6.1e-89 331.3 227 71.4
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 6.1e-89 331.3 224 72.3
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 8.0e-89 330.9 227 72.7
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 8.0e-89 330.9 227 72.7
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 1.0e-88 330.5 227 72.2
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.4e-88 330.1 227 73.1
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 2.3e-88 329.3 226 73.0
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 2.3e-88 329.3 227 71.4
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 3.0e-88 328.9 227 70.5
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 3.9e-88 328.6 222 73.9
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 5.2e-88 328.2 227 70.5
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 6.7e-88 327.8 227 71.8
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 6.7e-88 327.8 225 72.4
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 8.8e-88 327.4 224 72.3
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 8.8e-88 327.4 226 71.2
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 8.8e-88 327.4 222 73.4
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 1.1e-87 327.0 227 71.4
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.5e-87 326.6 227 71.8
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.5e-87 326.6 227 71.8
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.0e-87 326.2 222 73.0
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 2.0e-87 326.2 227 70.5
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 2.0e-87 326.2 227 70.5
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 2.6e-87 325.9 227 70.9
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 3.3e-87 325.5 227 70.9
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.3e-87 325.5 227 71.8
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 4.4e-87 325.1 227 70.5
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 4.4e-87 325.1 227 70.5
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 7.4e-87 324.3 227 71.4
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 9.7e-87 323.9 227 69.2
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 9.7e-87 323.9 227 72.2
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 9.7e-87 323.9 228 70.2
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 2.2e-86 322.8 225 71.6
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 6.3e-86 321.2 227 69.6
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 1.1e-85 320.5 226 70.4
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 1.1e-85 320.5 228 66.7
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.4e-85 320.1 227 70.0
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 1.8e-85 319.7 222 72.1
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 3.1e-85 318.9 227 70.0
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.2e-83 312.8 202 75.7
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 2.9e-83 312.4 227 68.3
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 1.8e-80 303.1 190 78.9
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 3.0e-80 302.4 309 50.8
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 5.2e-80 301.6 224 66.5
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 5.2e-80 301.6 228 62.7
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 6.7e-80 301.2 204 73.5
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 3.3e-79 298.9 226 65.9
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 4.8e-78 295.0 192 77.1
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.1e-77 293.9 227 66.1
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 1.4e-77 293.5 229 65.5
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 3.1e-77 292.4 208 67.8
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 2.9e-75 285.8 207 71.5
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 2.9e-75 285.8 210 69.5
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.5e-74 282.7 219 65.8
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 4.7e-73 278.5 230 62.2
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 4.4e-71 271.9 195 69.2
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 5.0e-67 258.5 179 70.4
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 5.0e-67 258.5 203 67.0
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 2.1e-65 253.1 237 56.5
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 3.1e-61 239.2 222 56.8
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 5.4e-61 238.4 220 56.4
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.2e-60 237.3 213 59.6
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 2.0e-60 236.5 152 75.7
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 1.0e-59 234.2 209 57.4
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 3.3e-58 229.2 229 53.3
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 2.1e-57 226.5 133 82.7
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.3e-54 217.2 144 73.6
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.3e-50 202.6 124 80.6
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 1.8e-48 196.8 144 68.8
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 1.7e-46 190.3 172 58.7
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 1.7e-46 190.3 142 66.9
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 1.9e-42 176.8 140 61.4
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 5.6e-42 175.3 134 65.7
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 7.3e-42 174.9 135 64.4
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 4.0e-40 169.1 119 69.7
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 5.2e-40 168.7 202 45.0
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 2.2e-38 163.3 143 53.8
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 6.4e-38 161.8 146 59.6
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 2.3e-35 153.3 194 46.4
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 5.1e-35 152.1 97 82.5
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 1.1e-34 151.0 85 84.7
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 1.5e-34 150.6 190 43.2
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 1.5e-34 150.6 98 75.5
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 5.6e-34 148.7 126 61.1
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 2.8e-33 146.4 129 57.4
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 1.1e-32 144.4 85 84.7
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 2.4e-32 143.3 108 68.5
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 2.9e-30 136.3 100 70.0
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 8.4e-30 134.8 85 76.5
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 8.4e-30 134.8 88 76.1
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 1.4e-29 134.0 77 87.0
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 4.2e-29 132.5 82 80.5
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 4.2e-29 132.5 85 72.9
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 2.3e-27 126.7 95 69.5
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 2.3e-27 126.7 124 54.8
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 7.3e-26 121.7 104 58.7
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.6e-25 120.6 85 71.8
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.2e-23 114.4 85 67.1
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 1.5e-23 114.0 76 73.7
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 3.4e-23 112.8 74 73.0
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 8.4e-22 108.2 125 48.0
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 2.8e-17 93.2 61 72.1
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 1.4e-16 90.9 77 61.0
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 2.0e-15 87.0 84 53.6
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 3.4e-15 86.3 51 78.4
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 5.8e-15 85.5 70 58.6
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 1.9e-13 80.5 187 29.9
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 2.7e-12 76.6 60 61.7
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 7.9e-12 75.1 67 56.7
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 1.8e-11 73.9 187 29.4
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 3.9e-11 72.8 219 28.3
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 1.5e-10 70.9 49 67.3


User provided reference genes

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