Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 4.0e-96 354.8 180 100.0
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 1.2e-87 326.6 170 95.9
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 3.8e-86 321.6 170 95.9
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 2.6e-50 202.6 170 68.8
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 1.6e-47 193.4 165 64.8
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.9e-45 186.4 161 68.3
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 1.1e-32 144.1 152 55.9
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 3.1e-32 142.5 149 52.3
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 5.4e-32 141.7 150 54.0
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 9.1e-32 141.0 172 48.8
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 2.0e-31 139.8 159 47.2
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.3e-30 137.1 147 51.7
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 2.3e-30 136.3 150 55.3
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 2.3e-30 136.3 165 47.3
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 2.9e-30 136.0 154 55.2
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 3.8e-30 135.6 154 53.2
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 6.5e-30 134.8 151 49.7
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 6.5e-30 134.8 160 53.1
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.1e-29 134.0 142 50.7
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 2.5e-29 132.9 148 50.0
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 2.5e-29 132.9 158 54.4
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 5.5e-29 131.7 151 49.7
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 1.2e-28 130.6 167 49.1
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 6.1e-28 128.3 153 51.0
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.0e-27 127.5 174 48.3
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 4.0e-27 125.6 170 44.1
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 8.8e-27 124.4 159 50.9
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 1.5e-26 123.6 155 47.1
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 1.5e-26 123.6 159 49.7
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 3.4e-26 122.5 163 49.7
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 3.4e-26 122.5 159 50.3
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 5.7e-26 121.7 153 50.3
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 7.5e-26 121.3 176 47.2
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 1.7e-25 120.2 157 47.8
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 1.7e-25 120.2 150 46.7
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 1.7e-25 120.2 150 46.7
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.8e-25 119.4 158 47.5
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 2.8e-25 119.4 156 46.2
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 3.7e-25 119.0 145 50.3
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 3.7e-25 119.0 156 48.1
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 4.9e-25 118.6 149 46.3
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.9e-25 118.6 144 52.1
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 4.9e-25 118.6 144 52.1
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.1e-24 117.5 167 50.3
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 2.4e-24 116.3 152 45.4
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 2.4e-24 116.3 154 50.6
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 4.1e-24 115.5 149 45.6
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 5.4e-24 115.2 161 47.8
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 1.2e-23 114.0 159 48.4
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 1.6e-23 113.6 159 45.9
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 1.6e-23 113.6 179 41.3
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 2.0e-23 113.2 155 45.8
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 2.0e-23 113.2 155 45.8
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 2.0e-23 113.2 155 45.8
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 2.0e-23 113.2 155 45.8
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 2.0e-23 113.2 155 45.8
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 2.7e-23 112.8 142 50.7
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.7e-23 112.8 144 50.0
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 3.5e-23 112.5 142 49.3
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 3.5e-23 112.5 156 46.8
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 4.5e-23 112.1 150 45.3
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 4.5e-23 112.1 150 45.3
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 5.9e-23 111.7 161 45.3
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 5.9e-23 111.7 176 41.5
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 5.9e-23 111.7 150 48.0
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 5.9e-23 111.7 150 47.3
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 5.9e-23 111.7 158 46.2
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 7.8e-23 111.3 150 46.0
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 7.8e-23 111.3 150 46.0
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 7.8e-23 111.3 150 46.0
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 7.8e-23 111.3 150 47.3
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 7.8e-23 111.3 147 43.5
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 7.8e-23 111.3 150 46.7
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 1.3e-22 110.5 142 49.3
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.3e-22 110.5 148 43.9
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 1.3e-22 110.5 169 45.6
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 2.3e-22 109.8 150 46.7
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 2.9e-22 109.4 153 47.1
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 3.8e-22 109.0 147 45.6
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 3.8e-22 109.0 152 45.4
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 3.8e-22 109.0 147 44.9
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 5.0e-22 108.6 149 44.3
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 5.0e-22 108.6 158 44.9
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 5.0e-22 108.6 158 44.9
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 5.0e-22 108.6 152 45.4
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 5.0e-22 108.6 158 44.9
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 5.0e-22 108.6 158 44.9
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 5.0e-22 108.6 147 44.9
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 5.0e-22 108.6 153 43.8
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 8.6e-22 107.8 142 49.3
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 1.9e-21 106.7 159 45.9
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 1.9e-21 106.7 159 45.9
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 2.5e-21 106.3 138 45.7
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 3.3e-21 105.9 163 43.6
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 3.3e-21 105.9 146 43.8
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 3.3e-21 105.9 146 44.5
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 4.3e-21 105.5 152 48.0
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.6e-21 105.1 157 43.9
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.6e-21 105.1 152 48.0
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 5.6e-21 105.1 147 44.9
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 7.3e-21 104.8 150 43.3
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 7.3e-21 104.8 149 43.0
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 9.5e-21 104.4 145 45.5
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 9.5e-21 104.4 149 47.0
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 2.1e-20 103.2 155 42.6
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 2.1e-20 103.2 153 45.1
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.8e-20 102.8 152 47.4
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 6.1e-20 101.7 128 49.2
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 6.1e-20 101.7 124 48.4
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 8.0e-20 101.3 164 41.5
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.3e-19 99.8 172 36.0
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 3.0e-19 99.4 143 46.2
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 4.0e-19 99.0 164 45.1
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 8.9e-19 97.8 150 46.7
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.2e-18 97.4 172 36.0
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.0e-18 96.7 164 48.8
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 2.0e-18 96.7 166 41.0
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 2.0e-18 96.7 121 47.9
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 7.5e-18 94.7 160 38.8
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 1.3e-17 94.0 146 45.2
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.3e-17 94.0 115 48.7
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.7e-17 93.6 115 48.7
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 2.2e-17 93.2 175 37.1
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.9e-17 92.8 151 40.4
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 3.7e-17 92.4 147 44.2
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 3.7e-17 92.4 143 43.4
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 6.4e-17 91.7 137 43.8
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 8.3e-17 91.3 121 42.1
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 1.1e-16 90.9 165 39.4
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 4.1e-16 89.0 142 45.8
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 9.2e-16 87.8 153 38.6
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 4.6e-15 85.5 143 37.1
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 5.9e-15 85.1 180 37.2
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 3.0e-14 82.8 151 35.1
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 3.0e-14 82.8 108 46.3
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 5.0e-14 82.0 132 42.4
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 6.6e-14 81.6 125 37.6
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.1e-13 80.9 132 42.4
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 4.3e-13 79.0 130 38.5
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 4.3e-13 79.0 174 37.9
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 1.4e-11 73.9 129 40.3
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 1.8e-11 73.6 145 33.8
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 4.0e-11 72.4 147 32.7
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 1.2e-10 70.9 80 48.8
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.5e-10 70.5 122 39.3
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 5.8e-10 68.6 145 30.3
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 5.8e-10 68.6 145 30.3
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 9.8e-10 67.8 150 35.3
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 2.2e-09 66.6 166 34.9
CAN.G17.22 Capsicum annuum HOM05D000434 ORTHO05D005487 3.7e-09 65.9 47 76.6
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.7e-09 65.9 133 33.1
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.9e-08 63.5 68 50.0
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 2.4e-08 63.2 154 32.5
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 2.0e-07 60.1 149 32.2
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 2.7e-07 59.7 144 31.9
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 1.7e-06 57.0 120 35.0
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 1.7e-06 57.0 120 35.0
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 2.3e-06 56.6 112 36.6
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 2.3e-06 56.6 120 34.2
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 2.3e-06 56.6 112 36.6
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 3.9e-06 55.8 116 35.3
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 6.6e-06 55.1 191 28.8


User provided reference genes

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