Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g008360 Solanum pennellii HOM05D008117 ORTHO05D010265 3.9e-42 174.5 93 100.0
PGSC0003DMG400006546 Solanum tuberosum HOM05D008117 ORTHO05D010265 1.9e-36 155.6 90 92.2
CAN.G61.2 Capsicum annuum HOM05D008117 ORTHO05D010265 2.6e-30 135.2 93 79.6
vmacro12526 Vaccinium macrocarpon HOM05D008117 ORTHO05D010265 9.9e-22 106.7 92 59.8
ClCG08G010860 Citrullus lanatus HOM05D008117 ORTHO05D010265 6.4e-21 104.0 94 61.7
Rhsim13G0192300 Rhododendron simsii HOM05D008117 ORTHO05D010265 6.4e-21 104.0 93 61.3
DCAR_028229 Daucus carota HOM05D008117 ORTHO05D010265 7.1e-20 100.5 75 65.3
CSS0024149 Camellia sinensis var. sinensis HOM05D008117 ORTHO05D010265 1.2e-19 99.8 79 65.8
Ciclev10002965m.g Citrus clementina HOM05D008117 ORTHO05D010265 1.2e-19 99.8 93 57.0
CiPaw.05G230200 Carya illinoinensis HOM05D008117 ORTHO05D010265 6.0e-19 97.4 91 60.4
CANSAT35G0099 Cannabis sativa HOM05D008117 ORTHO05D010265 1.0e-18 96.7 78 65.4
FAN08G2903 Fragaria x ananassa HOM05D008117 ORTHO05D010265 1.7e-18 95.9 82 59.8
RcHm_v2.0_Chr7g0240501 Rosa chinensis HOM05D008117 ORTHO05D010265 1.7e-18 95.9 81 59.3
CsaV3_6G035660 Cucumis sativus L. HOM05D008117 ORTHO05D010265 2.3e-18 95.5 92 59.8
Sed0012248 Sechium edule HOM05D008117 ORTHO05D010265 2.3e-18 95.5 93 58.1
PGR042G1408 Punica granatum HOM05D008117 ORTHO05D010265 3.0e-18 95.1 92 59.8
SGA_v2.0_scaffold25G11087 Striga asiatica HOM05D008117 ORTHO05D010265 6.6e-18 94.0 76 61.8
MSTRG.24141 Avicennia marina HOM05D008117 ORTHO05D010265 8.6e-18 93.6 76 61.8
Prupe.1G507400 Prunus persica HOM05D008117 ORTHO05D010265 8.6e-18 93.6 93 58.1
Sc23g0000960 Simmondsia chinensis HOM05D008117 ORTHO05D010265 8.6e-18 93.6 88 61.4
Thecc.08G115700 Theobroma cacao HOM05D008117 ORTHO05D010265 8.6e-18 93.6 91 59.3
EL10Ac5g11972 Beta vulgaris HOM05D008117 ORTHO05D010265 1.5e-17 92.8 78 61.5
FAN13G1450 Fragaria x ananassa HOM05D008117 ORTHO05D010265 1.5e-17 92.8 82 58.5
MD15G1359700 Malus domestica HOM05D008117 ORTHO05D010265 1.9e-17 92.4 81 59.3
Gohir.A05G231100 Gossypium hirsutum HOM05D008117 ORTHO05D010265 4.3e-17 91.3 91 59.3
FvH4_5g38460 Fragaria vesca HOM05D008117 ORTHO05D010265 5.6e-17 90.9 80 58.8
Eucgr.F03736 Eucalyptus grandis HOM05D008117 ORTHO05D010265 1.2e-16 89.7 90 58.9
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 1.6e-16 89.4 75 58.7
QL12p035434 Quercus lobata HOM05D008117 ORTHO05D010265 4.7e-16 87.8 78 61.5
MELO3C030294.2 Cucumis melo HOM05D008117 ORTHO05D010265 6.2e-16 87.4 76 65.8
Duzib041G0298 Durio zibethinus HOM05D008117 ORTHO05D010265 8.1e-16 87.0 91 56.0
HPP92_011399 Vanilla planifolia HOM05D008117 ORTHO05D010265 8.1e-16 87.0 71 63.4
Oeu002001.1 Olea europaea HOM05D008117 ORTHO05D010265 1.1e-15 86.7 87 55.2
FAN04G0767 Fragaria x ananassa HOM05D008117 ORTHO05D010265 1.4e-15 86.3 89 53.9
Sabra02G0071000 Salix brachista HOM05D008117 ORTHO05D010265 1.4e-15 86.3 74 62.2
AUR62002978 Chenopodium quinoa HOM05D008117 ORTHO05D010265 4.0e-15 84.7 78 61.5
Carub.0001s3375 Capsella rubella HOM05D008117 ORTHO05D010265 5.2e-15 84.3 80 57.5
Gohir.D05G233600 Gossypium hirsutum HOM05D008117 ORTHO05D010265 5.2e-15 84.3 91 56.0
Gorai.009G241700 Gossypium raimondii HOM05D008117 ORTHO05D010265 5.2e-15 84.3 91 56.0
Thhalv10009847m.g Eutrema salsugineum HOM05D008117 ORTHO05D010265 6.8e-15 84.0 80 58.8
Manes.18G072200 Manihot esculenta HOM05D008117 ORTHO05D010265 6.8e-15 84.0 90 56.7
Nn5g27934 Nelumbo nucifera HOM05D008117 ORTHO05D010265 6.8e-15 84.0 93 54.8
Hund16816 Selenicereus undatus HOM05D008117 ORTHO05D010265 6.8e-15 84.0 85 60.0
CARHR035030 Cardamine hirsuta HOM05D008117 ORTHO05D010265 8.9e-15 83.6 80 56.2
C01p32870 Brassica napus HOM05D008117 ORTHO05D010265 1.2e-14 83.2 82 59.8
BolC1t03228H Brassica oleracea HOM05D008117 ORTHO05D010265 2.6e-14 82.0 82 58.5
AT1G36380 Arabidopsis thaliana HOM05D008117 ORTHO05D010265 3.4e-14 81.6 91 56.0
Zm00001eb227210 Zea mays HOM05D008117 ORTHO05D010265 4.4e-14 81.3 77 55.8
A01p25940 Brassica napus HOM05D008117 ORTHO05D010265 7.6e-14 80.5 82 58.5
Psat5g111920 Pisum sativum HOM05D008117 ORTHO05D010265 7.6e-14 80.5 82 53.7
EL10Ac1g00048 Beta vulgaris HOM05D008117 ORTHO05D010265 9.9e-14 80.1 89 51.7
Potri.002G090100 Populus trichocarpa HOM05D008117 ORTHO05D010265 9.9e-14 80.1 77 57.1
Phvul.008G168800 Phaseolus vulgaris HOM05D008117 ORTHO05D010265 1.3e-13 79.7 80 55.0
Lalb_Chr04g0253261 Lupinus albus HOM05D008117 ORTHO05D010265 1.7e-13 79.3 80 56.2
Glyma.13G084800 Glycine max HOM05D008117 ORTHO05D010265 2.9e-13 78.6 82 52.4
Lj1g0006954 Lotus japonicus HOM05D008117 ORTHO05D010265 2.9e-13 78.6 82 54.9
SalBow6G0993 Salvia bowleyana HOM05D008117 ORTHO05D010265 2.9e-13 78.6 51 70.6
Zm00001eb243570 Zea mays HOM05D008117 ORTHO05D010265 2.9e-13 78.6 76 57.9
CDE08G1486 Ceratophyllum demersum HOM05D008117 ORTHO05D010265 3.8e-13 78.2 68 66.2
Medtr5g062750 Medicago truncatula HOM05D008117 ORTHO05D010265 3.8e-13 78.2 69 60.9
Glyma.14G166600 Glycine max HOM05D008117 ORTHO05D010265 6.4e-13 77.4 82 52.4
arahy.Tifrunner.gnm1.ann1.J5UY3S Arachis hypogaea HOM05D008117 ORTHO05D010265 2.4e-12 75.5 90 51.1
Os02g0552400 Oryza sativa ssp. japonica HOM05D008117 ORTHO05D010265 2.4e-12 75.5 76 51.3
arahy.Tifrunner.gnm1.ann1.V815ZK Arachis hypogaea HOM05D008117 ORTHO05D010265 3.2e-12 75.1 90 51.1
A05p19980 Brassica napus HOM05D008117 ORTHO05D010265 5.4e-12 74.3 73 54.8
BraA05t20905Z Brassica rapa HOM05D008117 ORTHO05D010265 5.4e-12 74.3 73 54.8
Aa31LG6G9030 Aethionema arabicum HOM05D008117 ORTHO05D010265 3.5e-11 71.6 78 55.1
Potri.005G171000 Populus trichocarpa HOM05D008117 ORTHO05D010265 2.3e-10 68.9 87 52.9
VMungo0647G2241 Vigna mungo HOM05D008117 ORTHO05D010265 4.3e-09 64.7 49 61.2
AagrBONN_evm.TU.Sc2ySwM_117.1449 Anthoceros agrestis HOM05D008117 ORTHO05D010265 5.6e-09 64.3 63 50.8
CDE06G1754 Ceratophyllum demersum HOM05D000001 ORTHO05D011242 4.0e-07 58.2 53 60.4


User provided reference genes

Program Settings