Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 0.0e+00 2536.9 1283 100.0
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 0.0e+00 2521.1 1288 99.1
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2404.8 1283 95.1
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2302.3 1401 86.1
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 0.0e+00 2246.9 1288 87.1
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 0.0e+00 2246.5 1288 87.5
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2223.7 1288 84.9
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 0.0e+00 2211.4 1288 85.1
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 0.0e+00 2206.0 1288 85.6
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 0.0e+00 2204.5 1287 85.5
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2201.4 1288 84.5
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 0.0e+00 2201.0 1288 84.6
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2200.6 1287 85.4
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 0.0e+00 2197.5 1302 84.7
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 0.0e+00 2193.3 1287 85.8
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 0.0e+00 2193.3 1288 84.5
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 0.0e+00 2192.9 1287 85.0
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2188.7 1287 84.8
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 0.0e+00 2181.8 1288 84.6
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 0.0e+00 2179.8 1287 84.3
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 0.0e+00 2171.4 1293 84.2
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 0.0e+00 2170.6 1288 84.7
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2170.2 1288 84.1
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 0.0e+00 2166.0 1287 84.3
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 0.0e+00 2166.0 1288 84.1
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 0.0e+00 2161.7 1285 84.4
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 0.0e+00 2160.6 1288 83.5
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 0.0e+00 2160.2 1288 83.9
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 2159.4 1293 84.1
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2156.3 1289 83.6
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2155.6 1289 83.8
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 0.0e+00 2154.4 1301 83.4
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2152.9 1291 83.7
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2152.5 1301 82.9
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2152.5 1288 83.6
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 0.0e+00 2150.9 1288 83.5
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2148.2 1289 83.5
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 0.0e+00 2140.9 1295 82.9
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2138.6 1326 81.4
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2135.9 1288 83.2
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 0.0e+00 2135.9 1288 82.8
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 0.0e+00 2134.8 1289 82.7
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 0.0e+00 2133.6 1284 83.3
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2121.7 1301 82.2
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2117.4 1301 81.9
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 0.0e+00 2107.4 1282 82.3
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 0.0e+00 2106.6 1288 81.9
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 0.0e+00 2105.9 1295 82.4
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 0.0e+00 2101.6 1283 82.4
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 0.0e+00 2098.9 1297 81.1
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 0.0e+00 2097.0 1295 81.0
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 2096.6 1288 81.9
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 0.0e+00 2096.2 1287 81.8
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 0.0e+00 2095.1 1286 81.6
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 0.0e+00 2093.5 1286 81.2
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 0.0e+00 2092.8 1286 81.3
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 0.0e+00 2092.4 1286 81.3
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 0.0e+00 2089.3 1312 80.6
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 0.0e+00 2085.8 1290 81.0
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2084.7 1294 81.4
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2083.1 1288 81.4
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 0.0e+00 2080.8 1298 80.4
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2067.7 1288 80.9
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2062.7 1290 80.8
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 0.0e+00 2061.2 1308 80.4
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 0.0e+00 2060.4 1215 83.9
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2058.5 1283 80.7
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2053.5 1293 79.8
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 0.0e+00 2051.2 1289 80.2
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2043.5 1294 79.6
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 0.0e+00 2025.0 1174 85.5
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 0.0e+00 2009.2 1299 78.3
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1929.8 1544 67.0
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 0.0e+00 1906.3 1223 78.5
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 0.0e+00 1902.9 1293 74.7
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 0.0e+00 1882.5 1284 75.2
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 0.0e+00 1870.9 1290 73.6
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 0.0e+00 1741.9 1315 70.5
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 0.0e+00 1687.2 911 92.5
Psat0s3583g0040 Pisum sativum HOM05D002281 ORTHO05D005599 0.0e+00 1607.4 955 84.3
Cpa.g.sc51.37 Carica papaya HOM05D002281 ORTHO05D005599 0.0e+00 1600.1 951 84.4
Rhsim05G0168900 Rhododendron simsii HOM05D002281 ORTHO05D005599 0.0e+00 1578.1 1069 75.8
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1562.0 941 81.7
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1554.3 908 84.0
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 0.0e+00 1525.0 1210 65.7
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 0.0e+00 1515.7 1177 66.9
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 0.0e+00 1506.1 1291 60.3
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 0.0e+00 1481.1 915 80.3
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 0.0e+00 1475.3 939 78.1
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 0.0e+00 1473.4 1295 58.2
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1457.6 1329 56.4
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 0.0e+00 1443.3 1290 56.7
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 0.0e+00 1430.2 913 78.2
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 0.0e+00 1427.9 911 78.2
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 0.0e+00 1397.1 840 82.5
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 0.0e+00 1380.2 956 73.6
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1312.0 1304 52.5
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 0.0e+00 1260.7 917 69.0
Hma1.2p1_0153F.1_g067920 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 1109.4 687 81.5
CAN.G61.7 Capsicum annuum HOM05D002281 ORTHO05D005599 5.4e-304 1048.1 803 71.6
Lj2A49T37 Lonicera japonica HOM05D002281 ORTHO05D005599 1.4e-243 847.4 471 89.6
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 2.4e-243 846.7 828 57.1
AUR62006997 Chenopodium quinoa HOM05D002281 ORTHO05D005599 8.3e-212 741.9 499 76.6
MD12G1252700 Malus domestica HOM05D002281 ORTHO05D005599 1.6e-207 727.6 446 83.0
SHI14430 Sapria himalayana HOM05D002281 ORTHO05D005599 1.1e-198 698.4 547 65.6
CAN.G61.6 Capsicum annuum HOM05D002281 ORTHO05D005599 1.8e-185 654.4 345 98.0
Actinidia03824 Actinidia chinensis HOM05D002281 ORTHO05D005599 1.3e-177 628.2 350 91.1
RcHm_v2.0_Chr3g0448911 Rosa chinensis HOM05D002281 ORTHO05D005599 1.4e-174 618.2 345 91.0
SEGI_41506 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.0e-173 614.4 420 72.1
Lalb_Chr18g0044191 Lupinus albus HOM05D002281 ORTHO05D005599 2.1e-170 604.4 345 89.3
ATR0787G220 Amborella trichopoda HOM05D002281 ORTHO05D005599 7.7e-165 585.9 345 87.2
CDE01G0796 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 1.4e-163 581.6 451 67.0
ClCG03G011400 Citrullus lanatus HOM05D002281 ORTHO05D005599 2.2e-159 567.8 345 84.9
CAN.G61.8 Capsicum annuum HOM05D002281 ORTHO05D005599 9.4e-155 552.4 410 72.0
CsaV3_1G040370 Cucumis sativus L. HOM05D002281 ORTHO05D005599 1.2e-154 552.0 345 82.9
Psat0s2603g0080 Pisum sativum HOM05D002281 ORTHO05D005599 8.2e-151 539.3 336 79.2
CDE01G0576 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 1.2e-149 535.4 376 71.5
Peaxi162Scf00285g00225 Petunia axillaris HOM05D002281 ORTHO05D005599 1.2e-146 525.4 272 98.5
CBR_g23328 Chara braunii HOM05D002281 ORTHO05D005599 3.9e-145 520.4 637 45.2
vmacro19963 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 4.8e-143 513.5 418 68.2
Cpa.g.sc51.41 Carica papaya HOM05D002281 ORTHO05D005599 1.6e-138 498.4 303 80.9
DCAR_005525 Daucus carota HOM05D002281 ORTHO05D005599 4.1e-126 457.2 251 93.2
HPP92_013016 Vanilla planifolia HOM05D002281 ORTHO05D005599 1.6e-122 445.3 301 72.4
Lj2A49G34 Lonicera japonica HOM05D002281 ORTHO05D005599 7.3e-115 419.9 244 86.1
Haze_04492 Corylus avellana HOM05D002281 ORTHO05D005599 3.6e-114 417.5 272 81.2
HPP92_013015 Vanilla planifolia HOM05D002281 ORTHO05D005599 2.0e-109 401.7 345 62.6
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 3.4e-104 384.4 260 77.7
arahy.Tifrunner.gnm1.ann1.I7KFZB Arachis hypogaea HOM05D002281 ORTHO05D005599 2.9e-103 381.3 256 79.7
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 3.5e-85 321.2 264 62.1
Hma1.2p1_0153F.1_g067900 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 1.4e-73 282.7 154 92.2
CBR_g23326 Chara braunii HOM05D002281 ORTHO05D005599 7.9e-69 266.9 466 33.7
vmacro19965 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 5.1e-68 264.2 167 77.8
Ah.06g188770 Amaranthus hybridus HOM05D002281 ORTHO05D005599 1.2e-61 243.0 134 89.6
Cc10_g10600 Coffea canephora HOM05D002281 ORTHO05D005599 3.9e-60 238.0 130 92.3
vmacro19966 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 8.7e-60 236.9 426 38.5
Lj2A50T26 Lonicera japonica HOM05D002281 ORTHO05D005599 4.1e-57 228.0 134 84.3
Lj2A49G35 Lonicera japonica HOM05D002281 ORTHO05D005599 1.2e-56 226.5 127 87.4
SHI14432 Sapria himalayana HOM05D002281 ORTHO05D005599 5.5e-54 217.6 142 73.2
Lj2A49T38 Lonicera japonica HOM05D002281 ORTHO05D005599 2.4e-49 202.2 119 82.4
CDE02G3044 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 2.8e-42 178.7 127 67.7
BraA03t10210Z Brassica rapa HOM05D002281 ORTHO05D005599 5.9e-40 171.0 123 72.4
CBR_g74560 Chara braunii HOM05D002281 ORTHO05D005599 1.2e-37 163.3 161 53.4
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 1.5e-35 156.4 128 68.0
Gorai.007G272700 Gossypium raimondii HOM05D002281 ORTHO05D005599 2.6e-35 155.6 99 76.8
SEGI_02952 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.6e-35 155.6 113 67.3
A03p08860 Brassica napus HOM05D002281 ORTHO05D005599 7.4e-35 154.1 123 66.7
Gohir.D11G253675 Gossypium hirsutum HOM05D002281 ORTHO05D005599 1.7e-34 152.9 99 75.8
SEGI_33538 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 4.2e-30 138.3 95 63.2
SEGI_28731 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.8e-25 122.9 133 47.4
Gohir.D11G253550 Gossypium hirsutum HOM05D002281 ORTHO05D005599 1.3e-23 116.7 74 78.4
Gorai.007G272500 Gossypium raimondii HOM05D002281 ORTHO05D005599 1.3e-23 116.7 74 77.0
Nn6g32299 Nelumbo nucifera HOM05D002281 ORTHO05D005599 5.5e-22 111.3 73 75.3
Gohir.A11G244201 Gossypium hirsutum HOM05D002281 ORTHO05D005599 7.2e-22 110.9 72 72.2
SHI14427 Sapria himalayana HOM05D000030 ORTHO05D000009 2.1e-21 109.4 130 50.0
arahy.Tifrunner.gnm1.ann1.57298L Arachis hypogaea HOM05D002281 ORTHO05D005599 7.7e-16 90.9 99 53.5
HPP92_013017 Vanilla planifolia HOM05D002281 ORTHO05D005599 2.7e-13 82.4 54 75.9
QL06p040095 Quercus lobata HOM05D002281 ORTHO05D005599 2.6e-11 75.9 77 51.9
Ah.06g188760 Amaranthus hybridus HOM05D002281 ORTHO05D006774 4.1e-09 68.6 142 35.2
vmacro19964 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 9.5e-06 57.4 32 78.1


User provided reference genes

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