Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g007780 Solanum pennellii HOM05D000176 ORTHO05D000106 1.6e-39 165.6 81 100.0
Solyc12g056672.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.5e-29 132.5 72 90.3
Sopen06g004480 Solanum pennellii HOM05D000176 ORTHO05D000106 1.5e-29 132.5 72 90.3
Sopen06g017070 Solanum pennellii HOM05D000176 ORTHO05D000106 1.5e-29 132.5 72 90.3
Solyc12g044693.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.6e-28 129.0 72 88.9
Solyc01g034010.2 Solanum lycopersicum HOM05D000176 ORTHO05D000106 2.1e-28 128.6 72 87.5
Solyc12g042607.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 2.3e-27 125.2 73 83.6
PGSC0003DMG400000655 Solanum tuberosum HOM05D000176 ORTHO05D000106 3.0e-27 124.8 72 84.7
Solyc10g018425.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 5.2e-27 124.0 73 86.3
Solyc08g016802.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 4.4e-26 120.9 72 84.7
Solyc03g083810.4 Solanum lycopersicum HOM05D000176 ORTHO05D000106 2.9e-25 118.2 64 89.1
Solyc08g014245.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 8.6e-22 106.7 58 86.2
Solyc01g081584.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 5.6e-21 104.0 72 69.4
Solyc10g008267.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 5.6e-21 104.0 72 69.4
Sopen12g008340 Solanum pennellii HOM05D000176 ORTHO05D000106 7.3e-21 103.6 72 69.4
Solyc07g019497.2 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.2e-20 102.8 72 68.1
Solyc08g067125.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.6e-20 102.4 72 68.1
Sopen01g034990 Solanum pennellii HOM05D000176 ORTHO05D000106 2.1e-20 102.1 72 68.1
Sopen03g022250 Solanum pennellii HOM05D000176 ORTHO05D000106 2.1e-20 102.1 72 68.1
Sopen04g029940 Solanum pennellii HOM05D000176 ORTHO05D000106 2.1e-20 102.1 72 68.1
Sopen09g029870 Solanum pennellii HOM05D000176 ORTHO05D000106 2.1e-20 102.1 72 68.1
Solyc11g020015.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 2.8e-20 101.7 54 90.7
Solyc03g005550.3 Solanum lycopersicum HOM05D000176 ORTHO05D000106 8.0e-20 100.1 72 66.7
Sopen01g011760 Solanum pennellii HOM05D000176 ORTHO05D000106 8.0e-20 100.1 72 66.7
Solyc10g050530.2 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.1e-19 99.8 69 68.1
Sopen05g027110 Solanum pennellii HOM05D000176 ORTHO05D000106 1.8e-19 99.0 69 68.1
PGSC0003DMG400027638 Solanum tuberosum HOM05D000176 ORTHO05D000106 2.3e-19 98.6 59 81.4
Solyc07g150136.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 5.2e-19 97.4 69 66.7
PGSC0003DMG401010918 Solanum tuberosum HOM05D000176 ORTHO05D000106 6.8e-19 97.1 54 85.2
PGSC0003DMG400006264 Solanum tuberosum HOM05D000176 ORTHO05D000106 1.4e-16 89.4 58 70.7
Solyc11g044453.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 3.3e-13 78.2 58 62.1
CSS0026564 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.8e-12 75.1 69 47.8
CSS0018283 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 3.6e-12 74.7 69 47.8
CSS0004167 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 4.7e-12 74.3 69 47.8
CSS0006036 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 4.7e-12 74.3 69 47.8
CSS0024487 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 4.7e-12 74.3 69 47.8
CSS0024646 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 4.7e-12 74.3 72 48.6
CSS0030233 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 4.7e-12 74.3 69 47.8
Solyc10g049663.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 4.7e-12 74.3 59 59.3
CSS0006340 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.2e-12 73.9 69 47.8
CSS0007859 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.2e-12 73.9 69 47.8
CSS0007867 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.2e-12 73.9 69 47.8
CSS0010546 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.2e-12 73.9 69 47.8
CSS0011501 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.2e-12 73.9 69 47.8
CSS0026252 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.2e-12 73.9 69 47.8
CSS0035420 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.2e-12 73.9 69 47.8
CSS0036437 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.2e-12 73.9 69 47.8
CSS0038560 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.2e-12 73.9 69 47.8
CSS0049971 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.2e-12 73.9 69 47.8
CSS0042023 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.1e-11 73.2 63 50.8
CSS0048918 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.8e-11 72.4 69 46.4
CSS0009485 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.3e-11 72.0 69 46.4
CSS0017905 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.5e-10 69.3 73 49.3
Sopen05g012360 Solanum pennellii HOM05D000176 ORTHO05D000106 9.9e-10 66.6 45 71.1
CSS0025783 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.7e-09 65.9 66 42.4
CSS0037304 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.7e-09 65.9 66 42.4
CSS0043966 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.7e-09 65.9 66 42.4
CSS0044124 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.7e-09 65.9 66 42.4
CSS0045961 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.7e-09 65.9 66 42.4
Solyc12g006100.2 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.7e-09 65.9 59 52.5
Sopen12g002060 Solanum pennellii HOM05D000176 ORTHO05D003511 1.7e-09 65.9 59 52.5
CSS0021846 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 8.3e-09 63.5 62 41.9
CSS0049024 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.4e-08 62.8 59 45.8
Rhsim10G0079000 Rhododendron simsii HOM05D000176 ORTHO05D003511 1.4e-08 62.8 54 50.0
CSS0028824 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.9e-08 62.4 66 45.5
Solyc04g150170.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.9e-08 62.4 45 66.7
CAN.G492.83 Capsicum annuum HOM05D000025 ORTHO05D017277 3.2e-08 61.6 57 49.1
Peaxi162Scf00803g00017 Petunia axillaris HOM05D000176 ORTHO05D000106 3.2e-08 61.6 67 38.8
MSTRG.13026 Avicennia marina HOM05D000176 ORTHO05D000106 4.1e-08 61.2 63 42.9
Peaxi162Scf00071g01148 Petunia axillaris HOM05D000176 ORTHO05D000106 4.1e-08 61.2 67 38.8
SGA_v2.0_scaffold42G15967 Striga asiatica HOM05D000176 ORTHO05D000106 4.1e-08 61.2 63 42.9
Peaxi162Scf00999g00311 Petunia axillaris HOM05D000176 ORTHO05D000106 7.1e-08 60.5 63 46.0
arahy.Tifrunner.gnm1.ann1.DS9IRV Arachis hypogaea HOM05D000176 ORTHO05D000106 9.2e-08 60.1 60 43.3
Peaxi162Scf00120g00054 Petunia axillaris HOM05D000176 ORTHO05D000106 9.2e-08 60.1 67 37.3
Peaxi162Scf00464g00118 Petunia axillaris HOM05D000176 ORTHO05D000106 9.2e-08 60.1 67 38.8
Peaxi162Scf00691g00622 Petunia axillaris HOM05D000176 ORTHO05D000106 9.2e-08 60.1 67 37.3
Peaxi162Scf00942g00034 Petunia axillaris HOM05D000176 ORTHO05D000106 9.2e-08 60.1 67 37.3
Peaxi162Scf01022g00112 Petunia axillaris HOM05D000176 ORTHO05D000106 9.2e-08 60.1 67 37.3
Sopen07g010520 Solanum pennellii HOM05D000176 ORTHO05D000106 9.2e-08 60.1 52 61.5
Migut.M01636 Erythranthe guttata HOM05D000176 ORTHO05D000106 1.6e-07 59.3 63 41.3
Solyc10g051090.3 Solanum lycopersicum HOM05D006072 ORTHO05D007363 1.6e-07 59.3 38 76.3
Peaxi162Scf01192g00316 Petunia axillaris HOM05D000176 ORTHO05D000106 2.1e-07 58.9 72 41.7
Peaxi162Scf01310g00028 Petunia axillaris HOM05D000176 ORTHO05D000106 2.1e-07 58.9 67 37.3
arahy.Tifrunner.gnm1.ann1.3W4EN6 Arachis hypogaea HOM05D000176 ORTHO05D000106 2.7e-07 58.5 60 43.3
Oeu017988.1 Olea europaea HOM05D000176 ORTHO05D000106 2.7e-07 58.5 63 41.3
Oeu049413.1 Olea europaea HOM05D000176 ORTHO05D000106 2.7e-07 58.5 63 41.3
Oeu049416.1 Olea europaea HOM05D000176 ORTHO05D000106 2.7e-07 58.5 63 41.3
Peaxi162Scf00043g01512 Petunia axillaris HOM05D000176 ORTHO05D000106 2.7e-07 58.5 56 41.1
Peaxi162Scf00351g00224 Petunia axillaris HOM05D000176 ORTHO05D000106 3.5e-07 58.2 67 35.8
Lalb_Chr01g0015401 Lupinus albus HOM05D000176 ORTHO05D000106 6.0e-07 57.4 63 41.3
Peaxi162Scf00353g00056 Petunia axillaris HOM05D000176 ORTHO05D000106 7.8e-07 57.0 66 37.9
Rhsim10G0041500 Rhododendron simsii HOM05D000176 ORTHO05D000106 7.8e-07 57.0 63 44.4
Sopen12g020220 Solanum pennellii HOM05D000002 ORTHO05D000047 7.8e-07 57.0 38 73.7
Ah.02g116630 Amaranthus hybridus HOM05D000176 ORTHO05D000106 1.0e-06 56.6 62 43.5
Nitab4.5_0000227g0290 Nicotiana tabacum HOM05D000176 ORTHO05D000106 1.0e-06 56.6 67 44.8
Peaxi162Scf00194g01010 Petunia axillaris HOM05D000176 ORTHO05D000106 1.0e-06 56.6 62 43.5
QL04p036356 Quercus lobata HOM05D000176 ORTHO05D000106 1.0e-06 56.6 71 43.7
arahy.Tifrunner.gnm1.ann1.AQQJ7I Arachis hypogaea HOM05D000176 ORTHO05D000106 1.3e-06 56.2 60 40.0
arahy.Tifrunner.gnm1.ann1.ZDIH5U Arachis hypogaea HOM05D000176 ORTHO05D000106 1.3e-06 56.2 60 41.7
vmacro21972 Vaccinium macrocarpon HOM05D000176 ORTHO05D000106 1.3e-06 56.2 67 41.8
Nitab4.5_0000153g0200 Nicotiana tabacum HOM05D000176 ORTHO05D000106 1.7e-06 55.8 69 42.0
arahy.Tifrunner.gnm1.ann1.SJ4552 Arachis hypogaea HOM05D000176 ORTHO05D000106 2.3e-06 55.5 60 41.7
Lalb_Chr23g0270871 Lupinus albus HOM05D000176 ORTHO05D000106 2.3e-06 55.5 63 46.0
Sabra01G0157300 Salix brachista HOM05D000176 ORTHO05D000106 2.3e-06 55.5 62 35.5
arahy.Tifrunner.gnm1.ann1.LPR03G Arachis hypogaea HOM05D000176 ORTHO05D000106 3.0e-06 55.1 60 43.3
Rhsim03G0028500 Rhododendron simsii HOM05D000176 ORTHO05D000106 3.0e-06 55.1 67 40.3
Solyc07g044815.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 3.0e-06 55.1 34 70.6
TPR.G40704 Trifolium pratense HOM05D000176 ORTHO05D000106 3.0e-06 55.1 63 41.3
arahy.Tifrunner.gnm1.ann1.67XZJP Arachis hypogaea HOM05D000176 ORTHO05D000106 3.9e-06 54.7 60 41.7
Thhalv10000135m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 3.9e-06 54.7 64 37.5
Peaxi162Scf00125g01027 Petunia axillaris HOM05D000176 ORTHO05D000106 3.9e-06 54.7 62 41.9
QL04p088711 Quercus lobata HOM05D000176 ORTHO05D000106 3.9e-06 54.7 71 42.3
QL05p088131 Quercus lobata HOM05D000176 ORTHO05D000106 3.9e-06 54.7 71 42.3
QL06p043010 Quercus lobata HOM05D000529 ORTHO05D000472 3.9e-06 54.7 71 42.3
QL08p034398 Quercus lobata HOM05D000176 ORTHO05D000106 3.9e-06 54.7 71 42.3
QL09p003987 Quercus lobata HOM05D000176 ORTHO05D003511 3.9e-06 54.7 63 39.7
QL11p043362 Quercus lobata HOM05D000176 ORTHO05D000106 3.9e-06 54.7 71 42.3
Sp4g03990 Schrenkiella parvula HOM05D000176 ORTHO05D000106 3.9e-06 54.7 64 35.9
TPR.G4962 Trifolium pratense HOM05D000176 ORTHO05D000106 3.9e-06 54.7 63 41.3
arahy.Tifrunner.gnm1.ann1.C609QN Arachis hypogaea HOM05D000176 ORTHO05D000106 5.1e-06 54.3 60 40.0
arahy.Tifrunner.gnm1.ann1.X3EK6A Arachis hypogaea HOM05D000176 ORTHO05D000106 5.1e-06 54.3 60 43.3
BcaC02g08378 Brassica carinata HOM05D000176 ORTHO05D000106 5.1e-06 54.3 64 35.9
A04p19430 Brassica napus HOM05D000176 ORTHO05D000106 5.1e-06 54.3 64 35.9
C04p55010 Brassica napus HOM05D000176 ORTHO05D000106 5.1e-06 54.3 64 35.9
BolC4t27041H Brassica oleracea HOM05D000176 ORTHO05D000106 5.1e-06 54.3 64 35.9
BraA04t17538Z Brassica rapa HOM05D000176 ORTHO05D000106 5.1e-06 54.3 64 35.9
Cc00_g03290 Coffea canephora HOM05D000176 ORTHO05D000106 5.1e-06 54.3 52 48.1
Cc07_g21250 Coffea canephora HOM05D000176 ORTHO05D000106 5.1e-06 54.3 52 48.1
Cc08_g06400 Coffea canephora HOM05D000176 ORTHO05D000106 5.1e-06 54.3 63 38.1
Peaxi162Scf00903g00214 Petunia axillaris HOM05D000176 ORTHO05D000106 5.1e-06 54.3 49 44.9
QL02p018295 Quercus lobata HOM05D000176 ORTHO05D000106 5.1e-06 54.3 71 42.3
QL02p032098 Quercus lobata HOM05D000176 ORTHO05D000106 5.1e-06 54.3 63 41.3
QL05p087728 Quercus lobata HOM05D000176 ORTHO05D000106 5.1e-06 54.3 71 42.3
BcaB06g28031 Brassica carinata HOM05D000176 ORTHO05D000106 6.6e-06 53.9 64 35.9
Ca_07377_v3 Cicer arietinum L. HOM05D000176 ORTHO05D012663 6.6e-06 53.9 49 55.1
Cc02_g29110 Coffea canephora HOM05D000176 ORTHO05D000106 6.6e-06 53.9 64 40.6
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 6.6e-06 53.9 71 42.3
THA.LOC104808853 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 6.6e-06 53.9 62 35.5
TWI09G0001 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 6.6e-06 53.9 57 42.1
TWI31G0542 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 6.6e-06 53.9 57 42.1
TWI56G0332 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 6.6e-06 53.9 57 42.1
TWI75G1856 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 6.6e-06 53.9 57 42.1
arahy.Tifrunner.gnm1.ann1.7N8JZK Arachis hypogaea HOM05D000577 ORTHO05D000106 8.6e-06 53.5 60 41.7
CANSAT56G1843 Cannabis sativa HOM05D000176 ORTHO05D000106 8.6e-06 53.5 62 33.9
Ciclev10014335m.g Citrus clementina HOM05D000176 ORTHO05D000106 8.6e-06 53.5 56 37.5
Ciclev10025397m.g Citrus clementina HOM05D000176 ORTHO05D000106 8.6e-06 53.5 64 32.8
Cc00_g24290 Coffea canephora HOM05D000176 ORTHO05D000106 8.6e-06 53.5 64 42.2
Peaxi162Scf00008g00465 Petunia axillaris HOM05D000176 ORTHO05D000106 8.6e-06 53.5 58 43.1


User provided reference genes

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