Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g007760 Solanum pennellii HOM05D003443 ORTHO05D008640 5.7e-71 270.8 134 100.0
Solyc11g013020.2 Solanum lycopersicum HOM05D003443 ORTHO05D008640 2.4e-69 265.4 134 98.5
PGSC0003DMG400000906 Solanum tuberosum HOM05D003443 ORTHO05D008640 1.3e-67 259.6 134 97.0
Nitab4.5_0002883g0010 Nicotiana tabacum HOM05D003443 ORTHO05D008640 2.0e-60 235.7 133 88.0
Nitab4.5_0001926g0050 Nicotiana tabacum HOM05D003443 ORTHO05D008640 1.4e-56 223.0 133 84.2
CAN.G513.1 Capsicum annuum HOM05D003443 ORTHO05D008640 3.8e-51 204.9 130 81.5
Peaxi162Scf00395g00717 Petunia axillaris HOM05D003443 ORTHO05D008640 4.5e-44 181.4 133 72.2
Peaxi162Scf00198g00098 Petunia axillaris HOM05D003443 ORTHO05D008640 7.7e-44 180.6 133 72.2
Actinidia23064 Actinidia chinensis HOM05D003443 ORTHO05D008640 7.5e-39 164.1 141 65.2
Actinidia02607 Actinidia chinensis HOM05D003443 ORTHO05D008640 1.6e-36 156.4 145 60.7
Dinv40389 Davidia involucrata HOM05D003443 ORTHO05D008640 1.6e-36 156.4 146 57.5
vmacro12548 Vaccinium macrocarpon HOM05D003443 ORTHO05D008640 1.6e-36 156.4 149 57.7
Rhsim06G0105400 Rhododendron simsii HOM05D003443 ORTHO05D008640 2.9e-35 152.1 141 60.3
GSVIVG01008902001 Vitis vinifera HOM05D003443 ORTHO05D008640 1.5e-34 149.8 133 60.2
Cc10_g11000 Coffea canephora HOM05D003443 ORTHO05D008640 3.3e-34 148.7 135 60.0
Manes.18G075200 Manihot esculenta HOM05D003443 ORTHO05D008640 1.2e-33 146.7 142 57.7
CSS0034050 Camellia sinensis var. sinensis HOM05D003443 ORTHO05D008640 1.6e-33 146.4 147 55.8
Psat2g087720 Pisum sativum HOM05D003443 ORTHO05D008640 2.1e-33 146.0 138 58.0
FAN24G2127 Fragaria x ananassa HOM05D003443 ORTHO05D008640 2.8e-33 145.6 133 59.4
Prupe.1G501600 Prunus persica HOM05D003443 ORTHO05D008640 2.8e-33 145.6 133 60.9
MD15G1353300 Malus domestica HOM05D003443 ORTHO05D008640 3.6e-33 145.2 131 61.8
Hma1.2p1_0073F.1_g038390 Hydrangea macrophylla HOM05D003443 ORTHO05D008640 4.7e-33 144.8 121 61.2
MD03G1200300 Malus domestica HOM05D003443 ORTHO05D008640 4.7e-33 144.8 131 61.8
Haze_00480 Corylus avellana HOM05D003443 ORTHO05D008640 6.2e-33 144.4 131 59.5
RcHm_v2.0_Chr6g0295401 Rosa chinensis HOM05D003443 ORTHO05D008640 1.0e-32 143.7 133 59.4
FAN15G0021 Fragaria x ananassa HOM05D003443 ORTHO05D008640 1.4e-32 143.3 133 59.4
Cfa015987 Carpinus fangiana HOM05D003443 ORTHO05D009887 1.8e-32 142.9 131 59.5
CiPaw.05G224500 Carya illinoinensis HOM05D003443 ORTHO05D008640 5.2e-32 141.4 139 54.0
FvH4_2g26530 Fragaria vesca HOM05D003443 ORTHO05D008640 5.2e-32 141.4 133 58.6
Thecc.08G121300 Theobroma cacao HOM05D003443 ORTHO05D008640 6.8e-32 141.0 128 60.2
Nn4g26023 Nelumbo nucifera HOM05D003443 ORTHO05D008640 1.5e-31 139.8 123 60.2
Atru.chr13.1408 Acer truncatum HOM05D003443 ORTHO05D008640 2.0e-31 139.4 140 56.4
Cpa.g.sc70.11 Carica papaya HOM05D003443 ORTHO05D008640 2.6e-31 139.0 130 56.2
FAN27G2419 Fragaria x ananassa HOM05D003443 ORTHO05D008640 2.6e-31 139.0 133 57.9
Ca_26970_v3 Cicer arietinum L. HOM05D003443 ORTHO05D008640 3.4e-31 138.7 133 57.9
Ciclev10002759m.g Citrus clementina HOM05D003443 ORTHO05D008640 5.8e-31 137.9 127 59.1
Gorai.009G244100 Gossypium raimondii HOM05D003443 ORTHO05D008640 5.8e-31 137.9 141 55.3
AL6G41970 Arabidopsis lyrata HOM05D003443 ORTHO05D008640 7.5e-31 137.5 130 52.3
Potri.002G086200 Populus trichocarpa HOM05D003443 ORTHO05D008640 7.5e-31 137.5 136 53.7
QL08p024382 Quercus lobata HOM05D003443 ORTHO05D008640 7.5e-31 137.5 129 57.4
Glyma.14G162600 Glycine max HOM05D003443 ORTHO05D008640 9.8e-31 137.1 124 58.9
Gohir.A05G233400 Gossypium hirsutum HOM05D003443 ORTHO05D008640 1.3e-30 136.7 141 54.6
Medtr5g058660 Medicago truncatula HOM05D003443 ORTHO05D008640 1.3e-30 136.7 133 55.6
Medtr5g059030 Medicago truncatula HOM05D003443 ORTHO05D008640 1.3e-30 136.7 133 55.6
Sabra02G0067600 Salix brachista HOM05D003443 ORTHO05D008640 1.3e-30 136.7 136 55.9
Sc01g0001350 Simmondsia chinensis HOM05D003443 ORTHO05D008640 1.3e-30 136.7 130 53.8
Gohir.D05G235800 Gossypium hirsutum HOM05D003443 ORTHO05D008640 1.7e-30 136.3 141 54.6
SGA_v2.0_scaffold52G18981 Striga asiatica HOM05D003443 ORTHO05D008640 2.2e-30 136.0 127 57.5
VMungo0647G0179 Vigna mungo HOM05D003443 ORTHO05D008640 2.9e-30 135.6 122 55.7
DCAR_014106 Daucus carota HOM05D003443 ORTHO05D008640 3.7e-30 135.2 140 52.9
AUR62004720 Chenopodium quinoa HOM05D003443 ORTHO05D008640 4.9e-30 134.8 129 57.4
SalBow7G4791 Salvia bowleyana HOM05D003443 ORTHO05D008640 8.3e-30 134.0 124 58.1
Lalb_Chr10g0101911 Lupinus albus HOM05D003443 ORTHO05D008640 1.1e-29 133.7 131 55.7
CANSAT25G1680 Cannabis sativa HOM05D003443 ORTHO05D008640 2.4e-29 132.5 121 59.5
Migut.C01148 Erythranthe guttata HOM05D003443 ORTHO05D008640 3.2e-29 132.1 128 57.0
AT4G08240 Arabidopsis thaliana HOM05D003443 ORTHO05D008640 7.0e-29 131.0 136 50.7
PSO170G0931 Papaver somniferum HOM05D003443 ORTHO05D008640 9.2e-29 130.6 136 54.4
arahy.Tifrunner.gnm1.ann1.ZIXY5S Arachis hypogaea HOM05D003443 ORTHO05D008640 2.0e-28 129.4 130 55.4
CsaV3_6G003590 Cucumis sativus L. HOM05D003443 ORTHO05D008640 2.0e-28 129.4 136 54.4
SalBow7G2413 Salvia bowleyana HOM05D003443 ORTHO05D008640 2.0e-28 129.4 124 56.5
Sed0028054 Sechium edule HOM05D003443 ORTHO05D008640 2.0e-28 129.4 132 56.1
BcaB01g02870 Brassica carinata HOM05D003443 ORTHO05D008640 3.5e-28 128.6 129 49.6
MELO3C011587.2 Cucumis melo HOM05D003443 ORTHO05D008640 6.0e-28 127.9 136 53.7
Thhalv10029053m.g Eutrema salsugineum HOM05D003443 ORTHO05D008640 7.8e-28 127.5 127 52.8
Sp6g09810 Schrenkiella parvula HOM05D003443 ORTHO05D008640 7.8e-28 127.5 131 48.9
Aa31LG9G14320 Aethionema arabicum HOM05D003443 ORTHO05D008640 1.0e-27 127.1 129 50.4
arahy.Tifrunner.gnm1.ann1.B00VWE Arachis hypogaea HOM05D003443 ORTHO05D008640 1.3e-27 126.7 130 55.4
THA.LOC104817138 Tarenaya hassleriana HOM05D003443 ORTHO05D008640 1.3e-27 126.7 132 50.8
Lj1g0013808 Lotus japonicus HOM05D003443 ORTHO05D008640 2.3e-27 125.9 130 54.6
CARHR259340 Cardamine hirsuta HOM05D003443 ORTHO05D008640 3.0e-27 125.6 129 49.6
Carub.0006s2677 Capsella rubella HOM05D003443 ORTHO05D008640 6.6e-27 124.4 122 52.5
MSTRG.1460 Avicennia marina HOM05D003443 ORTHO05D008640 1.1e-26 123.6 128 51.6
BcaC01g04776 Brassica carinata HOM05D003443 ORTHO05D008640 1.1e-26 123.6 129 48.1
C03p33840 Brassica napus HOM05D003443 ORTHO05D008640 1.1e-26 123.6 129 48.1
BolC3t15700H Brassica oleracea HOM05D003443 ORTHO05D008640 1.1e-26 123.6 129 48.1
BraA03t12014Z Brassica rapa HOM05D003443 ORTHO05D008640 1.1e-26 123.6 129 48.1
HanXRQChr09g0254131 Helianthus annuus HOM05D003443 ORTHO05D008640 2.5e-26 122.5 116 54.3
A03p27990 Brassica napus HOM05D003443 ORTHO05D008640 4.3e-26 121.7 129 46.5
MBI15_g35999_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D008640 7.3e-26 120.9 134 51.5
MBI06_g44272_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D008640 9.5e-26 120.6 134 51.5
Aqoxy6G00163 Aquilegia oxysepala HOM05D003443 ORTHO05D008640 2.8e-25 119.0 133 45.9
MELO3C011304.2 Cucumis melo HOM05D003443 ORTHO05D008640 4.7e-25 118.2 146 49.3
MD08G1167900 Malus domestica HOM05D003443 ORTHO05D008640 4.7e-25 118.2 139 51.1
HPP92_002301 Vanilla planifolia HOM05D003443 ORTHO05D008640 4.4e-23 111.7 125 49.6
ATR0121G005 Amborella trichopoda HOM05D003443 ORTHO05D008640 5.8e-23 111.3 131 48.9
ECA232G0443 Erigeron canadensis HOM05D003443 ORTHO05D008640 7.5e-23 110.9 126 48.4
TPR.G8499 Trifolium pratense HOM05D028375 ORTHO05D008640 1.3e-22 110.2 127 50.4
Lsat_1_v5_gn_4_136221 Lactuca sativa HOM05D003443 ORTHO05D008640 3.7e-22 108.6 130 46.9
CDE06G0537 Ceratophyllum demersum HOM05D003443 ORTHO05D008640 6.4e-22 107.8 111 51.4
unitig_747.g21488 Utricularia gibba HOM05D003443 ORTHO05D008640 1.1e-21 107.1 124 50.8
Hund27039 Selenicereus undatus HOM05D003443 ORTHO05D008640 2.4e-21 105.9 201 36.3
CDE08G0113 Ceratophyllum demersum HOM05D003443 ORTHO05D008640 3.2e-21 105.5 114 51.8
AUR62023639 Chenopodium quinoa HOM05D003443 ORTHO05D008640 7.1e-21 104.4 126 47.6
Oeu047933.1 Olea europaea HOM05D003443 ORTHO05D008640 2.1e-20 102.8 149 41.6
TAR628G1666 Trochodendron aralioides HOM05D003443 ORTHO05D008640 1.9e-18 96.3 88 55.7
Migut.G00969 Erythranthe guttata HOM05D003443 ORTHO05D008640 2.8e-17 92.4 128 46.9
PGR044G0044 Punica granatum HOM05D003443 ORTHO05D008640 1.4e-16 90.1 143 43.4
ClCG08G005410 Citrullus lanatus HOM05D003443 ORTHO05D008640 2.3e-16 89.4 212 31.6
Phvul.008G165400 Phaseolus vulgaris HOM05D003443 ORTHO05D008640 2.3e-16 89.4 127 44.1
TWI12G0841 Tripterygium wilfordii HOM05D003443 ORTHO05D008640 5.2e-16 88.2 69 59.4
Zm00001eb244530 Zea mays HOM05D003443 ORTHO05D008640 5.2e-16 88.2 131 42.7
Os02g0567000 Oryza sativa ssp. japonica HOM05D003443 ORTHO05D008640 6.8e-16 87.8 124 44.4
Ah.16g110170 Amaranthus hybridus HOM05D003443 ORTHO05D008640 7.6e-15 84.3 68 57.4
Eucgr.L01689 Eucalyptus grandis HOM05D003443 ORTHO05D008640 7.6e-15 84.3 68 58.8
SEGI_04119 Sequoiadendron giganteum HOM05D003443 ORTHO05D008640 9.9e-15 84.0 129 38.0
Duzib093G0610 Durio zibethinus HOM05D003443 ORTHO05D008640 5.4e-13 78.2 133 41.4
Mapoly0161s0025 Marchantia polymorpha HOM05D003443 ORTHO05D008640 2.1e-12 76.3 133 31.6
SHI33895 Sapria himalayana HOM05D003443 ORTHO05D008640 1.6e-09 66.6 121 35.5
Actinidia18153 Actinidia chinensis HOM05D003443 ORTHO05D008640 3.6e-09 65.5 62 59.7
Cfa009666 Carpinus fangiana HOM05D003443 ORTHO05D008640 4.0e-08 62.0 73 45.2
Cpa.g.sc36.31 Carica papaya HOM05D003443 ORTHO05D008640 2.6e-07 59.3 103 36.9
CDE11G0164 Ceratophyllum demersum HOM05D003443 ORTHO05D008640 8.4e-06 54.3 72 45.8


User provided reference genes

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