Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 7.4e-222 773.9 480 100.0
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 2.0e-214 749.2 480 96.9
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 2.3e-178 629.4 432 83.1
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 4.3e-129 465.7 357 77.0
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 4.0e-90 336.3 432 52.5
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 8.8e-90 335.1 433 52.9
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 1.1e-87 328.2 436 50.2
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 2.9e-85 320.1 444 49.5
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 5.0e-85 319.3 441 47.8
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 1.0e-82 311.6 466 47.9
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 1.5e-81 307.8 432 49.3
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 4.4e-81 306.2 444 48.4
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 5.7e-81 305.8 438 47.0
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 3.7e-80 303.1 415 47.5
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 1.1e-79 301.6 435 51.0
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 2.0e-78 297.4 462 45.0
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 4.5e-78 296.2 430 46.0
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 1.7e-77 294.3 434 47.7
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 2.2e-77 293.9 467 43.9
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 2.9e-77 293.5 440 46.4
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.5e-76 291.2 439 45.8
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 9.4e-76 288.5 437 47.4
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 8.0e-75 285.4 437 47.1
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.8e-74 284.3 420 46.9
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 3.0e-74 283.5 437 44.9
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 8.8e-74 282.0 449 47.2
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 1.2e-73 281.6 443 43.3
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 1.2e-73 281.6 460 46.1
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 5.7e-73 279.3 438 44.5
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 5.7e-73 279.3 446 46.9
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 1.7e-72 277.7 432 44.4
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 2.2e-72 277.3 441 47.2
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 2.8e-72 276.9 441 46.3
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 3.7e-72 276.6 448 43.1
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 4.9e-72 276.2 437 45.3
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 9.2e-71 271.9 432 44.7
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 9.2e-71 271.9 413 45.0
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.6e-70 271.2 446 45.7
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 2.0e-70 270.8 429 43.1
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 2.3e-69 267.3 478 41.2
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 8.6e-69 265.4 435 43.7
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 1.5e-68 264.6 434 44.5
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.9e-68 264.2 446 45.5
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 3.3e-68 263.5 539 39.1
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 2.1e-67 260.8 421 43.7
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.8e-67 260.4 438 44.3
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 3.6e-67 260.0 427 42.9
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 4.7e-67 259.6 436 45.0
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 3.0e-66 256.9 477 41.9
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 8.9e-66 255.4 458 43.9
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 1.2e-65 255.0 447 39.8
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 2.6e-65 253.8 444 43.5
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 4.4e-65 253.1 429 42.2
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 5.7e-65 252.7 510 40.4
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 7.5e-65 252.3 457 41.6
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 9.8e-65 251.9 388 46.4
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 9.8e-65 251.9 443 40.0
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.3e-64 251.5 439 45.8
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 2.9e-64 250.4 397 45.8
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 2.9e-64 250.4 468 43.2
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 3.7e-64 250.0 444 43.0
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 6.4e-64 249.2 431 41.1
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.4e-63 247.3 441 42.6
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 5.4e-63 246.1 427 44.7
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 9.2e-63 245.4 427 44.0
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 1.6e-62 244.6 430 40.2
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 4.6e-62 243.0 423 42.1
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 4.6e-62 243.0 417 42.2
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 7.8e-62 242.3 437 42.3
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 1.3e-61 241.5 424 39.9
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.3e-61 240.7 438 44.1
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.3e-61 240.7 438 43.8
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 3.9e-61 240.0 424 43.6
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 6.6e-61 239.2 426 41.8
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 6.6e-61 239.2 419 41.8
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.5e-60 238.0 428 41.6
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 5.6e-60 236.1 415 45.1
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 7.3e-60 235.7 431 42.0
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 2.8e-59 233.8 432 43.8
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 3.6e-59 233.4 394 42.6
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 1.4e-58 231.5 416 43.3
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 5.2e-58 229.6 425 40.0
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 1.5e-57 228.0 267 57.7
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 7.5e-57 225.7 441 42.0
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 8.3e-56 222.2 452 38.3
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 1.4e-55 221.5 456 38.8
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 2.4e-55 220.7 426 38.3
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 4.1e-55 219.9 415 39.5
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 4.1e-55 219.9 425 38.1
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 5.4e-55 219.5 421 39.7
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 7.0e-55 219.2 430 38.4
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 9.2e-55 218.8 419 39.6
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 1.6e-54 218.0 422 38.2
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 2.0e-54 217.6 426 39.4
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 2.7e-54 217.2 390 44.4
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 1.0e-53 215.3 319 46.4
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 1.9e-52 211.1 409 39.9
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 1.9e-52 211.1 575 35.1
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 4.3e-52 209.9 460 40.7
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 9.5e-52 208.8 419 41.3
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 1.6e-51 208.0 269 50.2
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 3.6e-51 206.8 390 42.3
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 8.1e-51 205.7 428 40.0
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 3.4e-49 200.3 413 38.0
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 6.4e-48 196.1 326 43.9
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 3.2e-47 193.7 417 37.2
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 2.7e-46 190.7 329 41.9
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 4.6e-46 189.9 425 36.7
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 9.5e-44 182.2 405 34.3
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 1.2e-43 181.8 398 40.5
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 1.2e-41 175.3 332 41.3
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 2.2e-40 171.0 391 35.8
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 6.8e-34 149.4 365 37.3
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 1.9e-31 141.4 276 41.3
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 2.7e-30 137.5 459 29.2
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 6.6e-29 132.9 441 32.0
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 3.3e-28 130.6 473 28.8
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.3e-27 128.6 129 55.0
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 3.1e-26 124.0 309 37.2
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 6.4e-24 116.3 108 59.3
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 8.4e-24 115.9 175 43.4
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 3.2e-23 114.0 417 27.3
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.2e-22 112.1 273 36.3
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 4.0e-18 97.1 72 73.6
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 9.0e-18 95.9 70 74.3
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.5e-17 95.1 401 25.7
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 4.5e-17 93.6 146 46.6
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 7.6e-17 92.8 168 41.7
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 2.9e-16 90.9 409 26.7
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 8.4e-16 89.4 99 45.5
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 7.9e-14 82.8 77 53.2
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 5.1e-13 80.1 173 34.7
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 8.1e-11 72.8 68 55.9
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 8.1e-11 72.8 66 56.1
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.7e-06 57.8 57 50.9
SEGI_25872 Sequoiadendron giganteum HOM05D005355 ORTHO05D006591 4.6e-06 57.0 367 28.6
SGA_v2.0_scaffold340G49301 Striga asiatica HOM05D005355 ORTHO05D006591 4.6e-06 57.0 67 49.3


User provided reference genes

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