Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 2.0e-89 332.4 167 100.0
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 6.4e-88 327.4 167 98.2
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 2.5e-84 315.5 168 95.8
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 4.3e-60 235.0 171 72.5
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 4.2e-31 138.7 146 53.4
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 1.6e-30 136.7 144 54.2
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 2.7e-30 136.0 152 48.0
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 6.1e-30 134.8 142 50.0
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 2.3e-29 132.9 150 50.0
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 3.9e-29 132.1 145 51.0
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 8.8e-29 131.0 152 48.7
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 8.8e-29 131.0 152 48.7
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 2.8e-27 125.9 150 48.0
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 1.1e-26 124.0 155 45.8
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 1.8e-26 123.2 149 49.0
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 2.4e-26 122.9 152 42.8
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.2e-25 120.6 150 46.0
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 2.6e-25 119.4 148 45.9
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 4.5e-25 118.6 150 49.3
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 2.2e-24 116.3 145 47.6
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.2e-24 116.3 148 45.9
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.2e-24 116.3 148 45.9
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 2.9e-24 115.9 145 46.9
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 2.9e-24 115.9 147 45.6
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 3.8e-24 115.5 137 46.0
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 1.1e-23 114.0 165 42.4
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 3.2e-23 112.5 178 39.9
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 5.5e-23 111.7 144 47.2
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 1.2e-22 110.5 141 42.6
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 1.6e-22 110.2 143 45.5
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 1.6e-22 110.2 137 42.3
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 2.1e-22 109.8 149 42.3
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 2.1e-22 109.8 168 42.3
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 2.7e-22 109.4 168 42.9
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 2.7e-22 109.4 144 45.8
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 2.7e-22 109.4 170 42.9
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 8.0e-22 107.8 140 45.0
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.0e-21 107.5 141 44.7
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 1.0e-21 107.5 139 43.9
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 1.0e-21 107.5 139 43.9
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.0e-21 107.5 132 46.2
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.8e-21 106.7 141 44.7
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 1.8e-21 106.7 141 47.5
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 2.3e-21 106.3 133 44.4
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 2.3e-21 106.3 167 41.3
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 3.0e-21 105.9 131 46.6
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 3.0e-21 105.9 131 46.6
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 3.0e-21 105.9 149 42.3
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 3.0e-21 105.9 144 45.8
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 3.9e-21 105.5 138 44.2
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 3.9e-21 105.5 131 46.6
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 3.9e-21 105.5 131 46.6
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 5.2e-21 105.1 171 38.6
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 6.7e-21 104.8 148 43.2
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 6.7e-21 104.8 139 42.4
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 8.8e-21 104.4 141 45.4
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 1.1e-20 104.0 131 45.8
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 1.1e-20 104.0 131 45.8
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 1.1e-20 104.0 163 44.2
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 1.5e-20 103.6 148 41.2
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 1.5e-20 103.6 148 41.2
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 2.0e-20 103.2 131 45.0
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 2.6e-20 102.8 149 42.3
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 3.3e-20 102.4 131 46.6
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 3.3e-20 102.4 134 43.3
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 3.3e-20 102.4 145 40.7
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 3.3e-20 102.4 148 41.9
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 3.3e-20 102.4 174 42.0
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 4.4e-20 102.1 131 45.0
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 4.4e-20 102.1 145 44.1
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 4.4e-20 102.1 144 41.0
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 4.4e-20 102.1 165 40.0
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 5.7e-20 101.7 134 45.5
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 5.7e-20 101.7 134 44.8
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 5.7e-20 101.7 134 44.8
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 5.7e-20 101.7 154 41.6
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 7.4e-20 101.3 131 43.5
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 7.4e-20 101.3 131 45.0
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 7.4e-20 101.3 139 43.2
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 7.4e-20 101.3 131 43.5
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 9.7e-20 100.9 147 42.2
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 9.7e-20 100.9 131 44.3
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 9.7e-20 100.9 162 40.1
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 9.7e-20 100.9 145 40.7
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 9.7e-20 100.9 139 46.0
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 1.3e-19 100.5 163 42.3
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 1.3e-19 100.5 163 42.3
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 2.2e-19 99.8 131 44.3
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 2.2e-19 99.8 136 44.1
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 2.2e-19 99.8 145 44.1
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 2.8e-19 99.4 148 39.2
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 2.8e-19 99.4 129 44.2
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 3.7e-19 99.0 137 40.1
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 4.8e-19 98.6 142 42.3
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 4.8e-19 98.6 136 44.9
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 4.8e-19 98.6 152 40.8
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 4.8e-19 98.6 133 39.8
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 6.3e-19 98.2 134 44.0
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 8.2e-19 97.8 151 40.4
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 8.2e-19 97.8 148 39.9
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 8.2e-19 97.8 145 40.7
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 1.1e-18 97.4 166 38.6
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 1.1e-18 97.4 166 36.7
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 1.4e-18 97.1 138 40.6
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 1.4e-18 97.1 164 43.9
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 1.4e-18 97.1 164 43.9
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 1.8e-18 96.7 160 42.5
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 1.8e-18 96.7 142 42.3
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 2.4e-18 96.3 143 39.9
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 2.4e-18 96.3 160 41.2
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 4.1e-18 95.5 144 41.7
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 4.1e-18 95.5 157 40.8
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 5.3e-18 95.1 129 46.5
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 5.3e-18 95.1 129 46.5
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 9.1e-18 94.4 133 42.1
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 1.2e-17 94.0 165 40.0
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 1.6e-17 93.6 166 39.8
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 1.6e-17 93.6 139 43.2
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 2.6e-17 92.8 171 36.8
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 3.5e-17 92.4 139 40.3
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 3.5e-17 92.4 166 36.1
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 3.5e-17 92.4 142 38.7
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 3.5e-17 92.4 137 42.3
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 4.5e-17 92.0 196 38.3
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 4.5e-17 92.0 141 41.1
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 4.5e-17 92.0 155 42.6
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 5.9e-17 91.7 143 39.2
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 5.9e-17 91.7 129 45.7
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 5.9e-17 91.7 128 43.0
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 7.7e-17 91.3 130 41.5
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 7.7e-17 91.3 161 40.4
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 1.0e-16 90.9 135 39.3
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.0e-16 90.9 150 42.0
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 1.0e-16 90.9 168 38.7
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 1.7e-16 90.1 171 37.4
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 2.2e-16 89.7 136 41.9
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 2.2e-16 89.7 141 39.7
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 2.2e-16 89.7 151 37.7
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 2.9e-16 89.4 151 38.4
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 3.8e-16 89.0 145 38.6
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 5.0e-16 88.6 162 37.7
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 6.5e-16 88.2 153 39.9
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 6.5e-16 88.2 154 40.3
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 6.5e-16 88.2 150 40.0
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 8.5e-16 87.8 151 39.1
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 1.5e-15 87.0 158 39.9
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 3.2e-15 85.9 141 39.7
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 5.5e-15 85.1 160 38.8
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 7.2e-15 84.7 169 37.3
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 9.4e-15 84.3 151 39.7
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 9.4e-15 84.3 151 39.7
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 9.4e-15 84.3 149 38.3
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 9.4e-15 84.3 149 38.9
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.2e-14 84.0 151 38.4
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 1.2e-14 84.0 149 38.9
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.2e-14 84.0 140 40.0
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.6e-14 83.6 149 37.6
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.6e-14 83.6 159 34.0
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 8.0e-14 81.3 129 43.4
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 1.0e-13 80.9 151 39.1
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 1.0e-13 80.9 149 38.9
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 1.0e-13 80.9 151 39.1
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 1.0e-13 80.9 151 39.1
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 2.3e-13 79.7 135 37.0
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 3.0e-13 79.3 137 38.7
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 3.0e-13 79.3 95 43.2
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 4.0e-13 79.0 129 38.0
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 5.2e-13 78.6 144 36.8
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 1.5e-12 77.0 145 35.9
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 1.5e-12 77.0 190 32.1
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 7.5e-12 74.7 121 35.5
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 3.7e-11 72.4 122 36.1
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 5.3e-10 68.6 167 34.7
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 1.6e-09 67.0 161 36.6
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 2.0e-09 66.6 149 32.9
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 3.5e-09 65.9 80 42.5
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 2.1e-06 56.6 106 38.7


User provided reference genes

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