Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 7.5e-98 360.5 184 100.0
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 3.7e-97 358.2 184 98.9
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 4.5e-95 351.3 184 96.2
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 4.9e-89 331.3 184 91.3
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.2e-84 316.6 184 88.0
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 4.0e-83 311.6 184 85.9
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 1.2e-63 246.9 185 73.0
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 6.0e-63 244.6 190 72.1
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 7.8e-63 244.2 187 71.7
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.7e-62 243.0 186 70.4
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.1e-61 240.4 187 70.6
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.6e-60 236.5 187 69.5
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 2.8e-60 235.7 189 67.2
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 1.2e-58 230.3 186 66.7
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 1.3e-57 226.9 188 66.5
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 1.7e-57 226.5 188 68.6
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 3.8e-57 225.3 186 65.6
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 3.5e-55 218.8 186 64.0
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 2.3e-54 216.1 189 64.0
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.9e-54 215.3 171 67.8
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 5.1e-54 214.9 196 62.8
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 2.1e-52 209.5 190 66.3
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 4.8e-52 208.4 189 61.9
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 8.1e-52 207.6 189 63.0
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 8.1e-52 207.6 185 61.1
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 1.4e-51 206.8 189 64.0
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.8e-51 206.5 190 62.6
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 5.3e-51 204.9 187 64.7
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 5.3e-51 204.9 186 65.6
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 6.9e-51 204.5 191 61.3
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 3.4e-50 202.2 191 60.7
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 9.9e-50 200.7 186 64.0
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.3e-49 200.3 178 64.0
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 2.2e-49 199.5 186 60.8
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 4.9e-49 198.4 187 64.2
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 6.4e-49 198.0 188 63.8
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 1.4e-48 196.8 191 59.2
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 1.4e-48 196.8 189 61.4
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 4.2e-48 195.3 191 58.6
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 4.2e-48 195.3 188 59.0
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 9.3e-48 194.1 189 60.8
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 2.1e-47 193.0 189 60.3
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 3.5e-47 192.2 189 61.9
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 4.6e-47 191.8 183 60.7
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.0e-47 191.4 176 60.2
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 6.0e-47 191.4 183 61.7
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 6.0e-47 191.4 186 60.8
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.8e-46 189.9 188 61.7
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 1.8e-46 189.9 183 56.3
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 1.8e-46 189.9 191 57.1
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 1.5e-45 186.8 193 60.1
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 5.6e-45 184.9 188 56.9
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 5.6e-45 184.9 167 60.5
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 9.6e-45 184.1 183 59.0
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 2.0e-42 176.4 114 79.8
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.0e-42 176.4 184 57.1
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 5.8e-42 174.9 178 59.0
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 1.0e-41 174.1 201 55.7
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 4.9e-41 171.8 201 53.7
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 4.9e-41 171.8 178 60.1
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 6.5e-41 171.4 178 56.7
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 1.1e-40 170.6 186 56.5
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 5.5e-40 168.3 185 55.7
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 9.3e-40 167.5 167 56.9
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 1.2e-39 167.2 201 52.2
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.1e-39 166.4 182 56.0
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 3.5e-39 165.6 191 57.6
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 3.5e-39 165.6 182 57.7
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 3.5e-39 165.6 187 53.5
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 6.7e-38 161.4 172 53.5
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 8.7e-38 161.0 188 52.1
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 1.9e-37 159.8 188 52.7
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 3.3e-37 159.1 153 58.8
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 4.3e-37 158.7 188 52.7
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 4.3e-37 158.7 188 52.1
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.3e-36 157.1 134 62.7
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 1.3e-36 157.1 178 55.1
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 8.2e-36 154.5 115 68.7
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 1.4e-35 153.7 186 51.1
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 1.4e-35 153.7 193 50.8
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 5.3e-35 151.8 197 48.2
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 5.3e-35 151.8 197 48.2
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 6.9e-35 151.4 115 67.8
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.2e-34 150.6 179 53.1
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.2e-34 150.6 152 55.9
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.6e-34 149.4 152 55.3
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 2.6e-34 149.4 152 55.3
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 1.3e-33 147.1 186 51.6
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 2.2e-33 146.4 180 55.6
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 5.0e-33 145.2 188 54.8
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 1.4e-32 143.7 118 72.9
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.4e-32 143.7 189 51.3
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.2e-32 142.1 125 60.8
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 4.2e-32 142.1 183 50.3
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 4.2e-32 142.1 184 48.4
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 1.2e-31 140.6 183 54.6
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 2.1e-31 139.8 181 51.9
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 3.0e-30 136.0 177 49.7
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 1.9e-29 133.3 193 45.6
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 3.3e-29 132.5 161 54.0
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.8e-28 128.6 95 74.7
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 6.3e-28 128.3 112 60.7
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.1e-27 127.5 179 49.2
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 1.5e-26 123.6 115 60.0
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 2.6e-26 122.9 175 48.0
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 5.5e-24 115.2 155 51.6
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 6.7e-22 108.2 123 55.3
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 2.8e-20 102.8 176 41.5
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 3.7e-20 102.4 84 70.2
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 8.2e-20 101.3 168 43.5
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 1.1e-19 100.9 170 44.1
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.4e-19 100.5 181 39.8
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.4e-19 99.8 181 39.2
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 6.9e-19 98.2 175 44.6
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 9.1e-19 97.8 75 73.3
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 2.0e-18 96.7 175 43.4
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 3.4e-18 95.9 174 42.5
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 3.4e-18 95.9 172 42.4
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 3.4e-18 95.9 172 42.4
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 3.4e-18 95.9 172 42.4
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 5.9e-18 95.1 174 42.0
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 7.7e-18 94.7 120 51.7
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 5.0e-17 92.0 171 42.1
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 1.4e-16 90.5 59 76.3
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 6.1e-15 85.1 192 34.9
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 2.3e-14 83.2 192 37.5
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 2.0e-13 80.1 78 59.0
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 3.7e-12 75.9 47 85.1
CAN.G696.6 Capsicum annuum HOM05D005219 ORTHO05D001154 1.0e-06 57.8 42 78.6
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.4e-06 57.4 46 73.9
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.4e-06 57.4 46 73.9
Zm00001eb365900 Zea mays HOM05D004683 ORTHO05D005388 4.0e-06 55.8 117 35.0


User provided reference genes

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