Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g012600.3 Solanum lycopersicum HOM05D002882 ORTHO05D003127 1.2e-30 136.0 71 100.0
Sopen11g007330 Solanum pennellii HOM05D002882 ORTHO05D003127 1.2e-30 136.0 71 100.0
PGSC0003DMG400013293 Solanum tuberosum HOM05D002232 ORTHO05D002323 7.5e-30 133.3 71 97.2
CAN.G696.9 Capsicum annuum HOM05D002882 ORTHO05D003127 2.1e-24 115.2 66 90.9
Oeu047048.1 Olea europaea HOM05D002882 ORTHO05D003127 7.3e-17 90.1 64 78.1
SalBow8G3098 Salvia bowleyana HOM05D002882 ORTHO05D003127 7.3e-17 90.1 63 68.3
Migut.M01429 Erythranthe guttata HOM05D002882 ORTHO05D003127 3.6e-16 87.8 63 71.4
Solyc04g014840.3 Solanum lycopersicum HOM05D002882 ORTHO05D003127 4.0e-15 84.3 64 68.8
Sopen04g006970 Solanum pennellii HOM05D002882 ORTHO05D003127 4.0e-15 84.3 64 68.8
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 2.0e-14 82.0 64 70.3
HanXRQChr01g0004761 Helianthus annuus HOM05D002882 ORTHO05D003127 1.1e-12 76.3 62 62.9
DCAR_030855 Daucus carota HOM05D002882 ORTHO05D003127 2.4e-12 75.1 61 59.0
QL05p068309 Quercus lobata HOM05D002882 ORTHO05D003127 3.3e-09 64.7 66 54.5
Dinv04408 Davidia involucrata HOM05D002882 ORTHO05D003127 4.3e-09 64.3 66 54.5
CiPaw.09G105800 Carya illinoinensis HOM05D002882 ORTHO05D003127 7.3e-09 63.5 66 53.0
vmacro03624 Vaccinium macrocarpon HOM05D002882 ORTHO05D003127 9.5e-09 63.2 63 58.7
vmacro23180 Vaccinium macrocarpon HOM05D002882 ORTHO05D003127 9.5e-09 63.2 63 58.7
Gohir.A01G154400 Gossypium hirsutum HOM05D002882 ORTHO05D003127 1.2e-08 62.8 64 53.1
Zm00001eb107890 Zea mays HOM05D002882 ORTHO05D003127 1.6e-08 62.4 65 52.3
Zm00001eb325710 Zea mays HOM05D002882 ORTHO05D003127 1.6e-08 62.4 65 53.8
Lalb_Chr13g0294401 Lupinus albus HOM05D002882 ORTHO05D003127 2.1e-08 62.0 66 54.5
Lalb_Chr07g0187071 Lupinus albus HOM05D002882 ORTHO05D003127 2.8e-08 61.6 66 53.0
Nn1g07474 Nelumbo nucifera HOM05D002882 ORTHO05D003127 2.8e-08 61.6 66 51.5
PSO541G3989 Papaver somniferum HOM05D002882 ORTHO05D003127 2.8e-08 61.6 66 51.5
PSO675G6750 Papaver somniferum HOM05D002882 ORTHO05D003127 2.8e-08 61.6 66 51.5
BcaC05g26741 Brassica carinata HOM05D002882 ORTHO05D003127 3.6e-08 61.2 66 51.5
Oeu005006.1 Olea europaea HOM05D002882 ORTHO05D003127 3.6e-08 61.2 66 50.0
TWI75G1132 Tripterygium wilfordii HOM05D002882 ORTHO05D003127 3.6e-08 61.2 66 53.0
CANSAT56G1012 Cannabis sativa HOM05D002882 ORTHO05D003127 4.7e-08 60.8 66 50.0
HanXRQChr09g0273281 Helianthus annuus HOM05D002882 ORTHO05D003127 4.7e-08 60.8 66 50.0
Os07g0583000 Oryza sativa ssp. japonica HOM05D002882 ORTHO05D003127 4.7e-08 60.8 65 52.3
THA.LOC104807127 Tarenaya hassleriana HOM05D002882 ORTHO05D003127 4.7e-08 60.8 69 50.7
BcaB03g12073 Brassica carinata HOM05D002882 ORTHO05D003127 6.2e-08 60.5 66 51.5
BcaC01g01622 Brassica carinata HOM05D002882 ORTHO05D003127 6.2e-08 60.5 66 51.5
BcaC05g26548 Brassica carinata HOM05D002882 ORTHO05D003127 6.2e-08 60.5 66 51.5
A07p11910 Brassica napus HOM05D002882 ORTHO05D003127 6.2e-08 60.5 66 51.5
A09p38600 Brassica napus HOM05D002882 ORTHO05D003127 6.2e-08 60.5 66 51.5
C05p26050 Brassica napus HOM05D002882 ORTHO05D003127 6.2e-08 60.5 66 51.5
C07p17860 Brassica napus HOM05D002882 ORTHO05D003127 6.2e-08 60.5 66 51.5
BolC5t31324H Brassica oleracea HOM05D002882 ORTHO05D003127 6.2e-08 60.5 66 51.5
BolC7t42292H Brassica oleracea HOM05D002882 ORTHO05D003127 6.2e-08 60.5 66 51.5
Dinv17570 Davidia involucrata HOM05D002882 ORTHO05D003127 6.2e-08 60.5 66 48.5
Thhalv10009274m.g Eutrema salsugineum HOM05D002882 ORTHO05D003127 6.2e-08 60.5 66 51.5
Glyma.05G148000 Glycine max HOM05D002882 ORTHO05D003127 6.2e-08 60.5 66 51.5
Potri.006G017100 Populus trichocarpa HOM05D002882 ORTHO05D003127 6.2e-08 60.5 66 51.5
Zm00001eb166200 Zea mays HOM05D002882 ORTHO05D003127 6.2e-08 60.5 68 51.5
CSS0003576 Camellia sinensis var. sinensis HOM05D002882 ORTHO05D003127 8.1e-08 60.1 66 54.5
Cc11_g17020 Coffea canephora HOM05D002882 ORTHO05D003127 8.1e-08 60.1 65 50.8
Thhalv10009276m.g Eutrema salsugineum HOM05D002882 ORTHO05D003127 8.1e-08 60.1 66 51.5
HanXRQChr08g0236801 Helianthus annuus HOM05D002882 ORTHO05D003127 8.1e-08 60.1 66 50.0
MBI19_g07167_MAGBIO Magnolia biondii HOM05D002882 ORTHO05D003127 8.1e-08 60.1 66 50.0
Manes.13G010602 Manihot esculenta HOM05D002882 ORTHO05D003127 8.1e-08 60.1 66 51.5
HPP92_007896 Vanilla planifolia HOM05D002882 ORTHO05D003127 8.1e-08 60.1 66 48.5
ECA246G4694 Erigeron canadensis HOM05D002882 ORTHO05D003127 1.1e-07 59.7 66 48.5
Gohir.A03G125300 Gossypium hirsutum HOM05D002882 ORTHO05D003127 1.1e-07 59.7 66 51.5
Gohir.D02G148066 Gossypium hirsutum HOM05D002882 ORTHO05D003127 1.1e-07 59.7 66 51.5
Gorai.005G165800 Gossypium raimondii HOM05D002882 ORTHO05D003127 1.1e-07 59.7 66 51.5
Lsat_1_v5_gn_3_30780 Lactuca sativa HOM05D002882 ORTHO05D003127 1.1e-07 59.7 66 51.5
Lj4g0011609 Lotus japonicus HOM05D002882 ORTHO05D003127 1.1e-07 59.7 66 51.5
Prupe.1G224500 Prunus persica HOM05D002882 ORTHO05D003127 1.1e-07 59.7 66 53.0
arahy.Tifrunner.gnm1.ann1.CG2Z4D Arachis hypogaea HOM05D002882 ORTHO05D003127 1.4e-07 59.3 65 50.8
arahy.Tifrunner.gnm1.ann1.ZB5YIW Arachis hypogaea HOM05D002882 ORTHO05D003127 1.4e-07 59.3 65 50.8
CiPaw.06G103700 Carya illinoinensis HOM05D002882 ORTHO05D003127 1.4e-07 59.3 66 51.5
Duzib251G0063 Durio zibethinus HOM05D002882 ORTHO05D003127 1.4e-07 59.3 66 51.5
Gohir.A12G149100 Gossypium hirsutum HOM05D002882 ORTHO05D003127 1.4e-07 59.3 66 48.5
Oeu004455.1 Olea europaea HOM05D002882 ORTHO05D003127 1.4e-07 59.3 66 47.0
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 1.4e-07 59.3 65 49.2
THA.LOC104807522 Tarenaya hassleriana HOM05D002882 ORTHO05D003127 1.4e-07 59.3 66 50.0
Thecc.02G206200 Theobroma cacao HOM05D002882 ORTHO05D003127 1.4e-07 59.3 66 51.5
Actinidia36810 Actinidia chinensis HOM05D002882 ORTHO05D003127 1.8e-07 58.9 66 50.0
BolC3t19658H Brassica oleracea HOM05D002882 ORTHO05D003127 1.8e-07 58.9 66 51.5
Lalb_Chr12g0206061 Lupinus albus HOM05D002882 ORTHO05D003127 1.8e-07 58.9 66 50.0
PSO017G4765 Papaver somniferum HOM05D002882 ORTHO05D003127 1.8e-07 58.9 66 50.0
PSO478G1706 Papaver somniferum HOM05D002882 ORTHO05D003127 1.8e-07 58.9 66 50.0
PGR119G2350 Punica granatum HOM05D002882 ORTHO05D003127 1.8e-07 58.9 66 51.5
Rhsim12G0092300 Rhododendron simsii HOM05D002882 ORTHO05D003127 1.8e-07 58.9 66 48.5
THA.LOC104825496 Tarenaya hassleriana HOM05D002882 ORTHO05D003127 1.8e-07 58.9 66 53.0
THA.LOC109116983 Tarenaya hassleriana HOM05D002882 ORTHO05D003127 1.8e-07 58.9 68 50.0
Zm00001eb115230 Zea mays HOM05D002882 ORTHO05D003127 1.8e-07 58.9 66 50.0
Aa31LG7G9870 Aethionema arabicum HOM05D002882 ORTHO05D003127 2.4e-07 58.5 65 53.8
BcaC05g26738 Brassica carinata HOM05D002882 ORTHO05D003127 2.4e-07 58.5 65 50.8
A08p26410 Brassica napus HOM05D002882 ORTHO05D003127 2.4e-07 58.5 65 50.8
A09p38620 Brassica napus HOM05D002882 ORTHO05D003127 2.4e-07 58.5 65 50.8
C03p73670 Brassica napus HOM05D002882 ORTHO05D003127 2.4e-07 58.5 65 50.8
C05p26030 Brassica napus HOM05D002882 ORTHO05D003127 2.4e-07 58.5 65 50.8
BolC5t31322H Brassica oleracea HOM05D002882 ORTHO05D003127 2.4e-07 58.5 65 50.8
BraA08t34592Z Brassica rapa HOM05D002882 ORTHO05D003127 2.4e-07 58.5 65 50.8
BraA09t39365Z Brassica rapa HOM05D002882 ORTHO05D003127 2.4e-07 58.5 65 50.8
BraA09t39367Z Brassica rapa HOM05D002882 ORTHO05D003127 2.4e-07 58.5 65 50.8
CsaV3_6G007080 Cucumis sativus L. HOM05D002882 ORTHO05D003127 2.4e-07 58.5 66 50.0
Gohir.D12G153000 Gossypium hirsutum HOM05D002882 ORTHO05D003127 2.4e-07 58.5 66 50.0
Gorai.008G165500 Gossypium raimondii HOM05D002882 ORTHO05D003127 2.4e-07 58.5 66 50.0
MD13G1120700 Malus domestica HOM05D002882 ORTHO05D003127 2.4e-07 58.5 66 51.5
Nitab4.5_0002317g0010 Nicotiana tabacum HOM05D002882 ORTHO05D003127 2.4e-07 58.5 66 47.0
Pp3c22_7390 Physcomitrium patens HOM05D002882 ORTHO05D003127 2.4e-07 58.5 66 51.5
Potri.016G008600 Populus trichocarpa HOM05D002882 ORTHO05D003127 2.4e-07 58.5 66 50.0
GSVIVG01010500001 Vitis vinifera HOM05D000160 ORTHO05D000496 2.4e-07 58.5 66 48.5
Zm00001eb264480 Zea mays HOM05D002882 ORTHO05D003127 2.4e-07 58.5 66 50.0
Aa31LG4G12570 Aethionema arabicum HOM05D002882 ORTHO05D003127 3.1e-07 58.2 66 51.5
AL1G40730 Arabidopsis lyrata HOM05D002882 ORTHO05D003127 3.1e-07 58.2 66 50.0
AL1G40750 Arabidopsis lyrata HOM05D002882 ORTHO05D003127 3.1e-07 58.2 66 50.0
AT1G27330 Arabidopsis thaliana HOM05D002882 ORTHO05D003127 3.1e-07 58.2 66 50.0
AT1G27350 Arabidopsis thaliana HOM05D002882 ORTHO05D003127 3.1e-07 58.2 66 50.0
CSS0005957 Camellia sinensis var. sinensis HOM05D002882 ORTHO05D003127 3.1e-07 58.2 61 55.7
CSS0019645 Camellia sinensis var. sinensis HOM05D002882 ORTHO05D003127 3.1e-07 58.2 61 55.7
CSS0030963 Camellia sinensis var. sinensis HOM05D002882 ORTHO05D003127 3.1e-07 58.2 61 55.7
Carub.0001s2586 Capsella rubella HOM05D002882 ORTHO05D003127 3.1e-07 58.2 66 50.0
Carub.0001s2588 Capsella rubella HOM05D002882 ORTHO05D003127 3.1e-07 58.2 66 50.0
CDE04G3034 Ceratophyllum demersum HOM05D002882 ORTHO05D003127 3.1e-07 58.2 66 51.5
Nn3g16443 Nelumbo nucifera HOM05D002882 ORTHO05D003127 3.1e-07 58.2 66 48.5
RcHm_v2.0_Chr4g0430041 Rosa chinensis HOM05D002882 ORTHO05D003127 3.1e-07 58.2 66 53.0
Solyc05g015530.3 Solanum lycopersicum HOM05D002882 ORTHO05D003127 3.1e-07 58.2 66 48.5
Sopen12g034980 Solanum pennellii HOM05D002882 ORTHO05D003127 3.1e-07 58.2 66 48.5
PGSC0003DMG402034311 Solanum tuberosum HOM05D002882 ORTHO05D003127 3.1e-07 58.2 66 48.5
TWI36G1708 Tripterygium wilfordii HOM05D002882 ORTHO05D003127 3.1e-07 58.2 66 50.0
Aqoxy5G03331 Aquilegia oxysepala HOM05D002882 ORTHO05D003127 4.0e-07 57.8 66 47.0
CDE07G2053 Ceratophyllum demersum HOM05D002882 ORTHO05D003127 4.0e-07 57.8 66 50.0
Duzib268G0405 Durio zibethinus HOM05D002882 ORTHO05D003127 4.0e-07 57.8 66 48.5
Migut.K00953 Erythranthe guttata HOM05D002882 ORTHO05D003127 4.0e-07 57.8 66 47.0
FvH4_4g23610 Fragaria vesca HOM05D002882 ORTHO05D003127 4.0e-07 57.8 66 51.5
Os11g0637501 Oryza sativa ssp. japonica HOM05D002882 ORTHO05D003127 4.0e-07 57.8 66 48.5
Phvul.L002646 Phaseolus vulgaris HOM05D002882 ORTHO05D003127 4.0e-07 57.8 66 47.0
PGR102G2921 Punica granatum HOM05D002882 ORTHO05D003127 4.0e-07 57.8 66 51.5
Actinidia20716 Actinidia chinensis HOM05D002882 ORTHO05D003127 5.2e-07 57.4 66 45.5
CANSAT01G2319 Cannabis sativa HOM05D002882 ORTHO05D003127 5.2e-07 57.4 66 51.5
Duzib248G1247 Durio zibethinus HOM05D002882 ORTHO05D003127 5.2e-07 57.4 66 50.0
Manes.12G009900 Manihot esculenta HOM05D002882 ORTHO05D003127 5.2e-07 57.4 66 47.0
Oeu035471.1 Olea europaea HOM05D002882 ORTHO05D003127 5.2e-07 57.4 66 47.0
Sed0006820 Sechium edule HOM05D002882 ORTHO05D003127 5.2e-07 57.4 66 50.0
Sed0017260 Sechium edule HOM05D002882 ORTHO05D003127 5.2e-07 57.4 66 47.0
TAR627G0864 Trochodendron aralioides HOM05D002882 ORTHO05D003127 5.2e-07 57.4 65 47.7
Actinidia08876 Actinidia chinensis HOM05D002882 ORTHO05D003127 6.8e-07 57.0 66 48.5
Actinidia09644 Actinidia chinensis HOM05D002882 ORTHO05D003127 6.8e-07 57.0 66 45.5
Ciclev10033270m.g Citrus clementina HOM05D002882 ORTHO05D003127 6.8e-07 57.0 66 51.5
Dinv11180 Davidia involucrata HOM05D002882 ORTHO05D003127 6.8e-07 57.0 66 47.0
Gorai.002G182300 Gossypium raimondii HOM05D002882 ORTHO05D003127 6.8e-07 57.0 65 50.8
Hma1.2p1_0065F.1_g035360 Hydrangea macrophylla HOM05D002882 ORTHO05D003127 6.8e-07 57.0 65 47.7
Lsat_1_v5_gn_5_12541 Lactuca sativa HOM05D002882 ORTHO05D003127 6.8e-07 57.0 65 49.2
unitig_22.g6403 Utricularia gibba HOM05D003418 ORTHO05D003127 6.8e-07 57.0 65 49.2
CsaV3_4G002750 Cucumis sativus L. HOM05D002882 ORTHO05D003127 8.9e-07 56.6 66 50.0
Mapoly0043s0038 Marchantia polymorpha HOM05D002882 ORTHO05D003127 8.9e-07 56.6 66 48.5
Os12g0514100 Oryza sativa ssp. japonica HOM05D002882 ORTHO05D003127 8.9e-07 56.6 66 48.5
Sed0013705 Sechium edule HOM05D002882 ORTHO05D003127 8.9e-07 56.6 66 48.5
TPR.G17098 Trifolium pratense HOM05D002882 ORTHO05D003127 8.9e-07 56.6 66 51.5
vmacro16103 Vaccinium macrocarpon HOM05D002882 ORTHO05D003127 8.9e-07 56.6 65 47.7
Atru.chr12.733 Acer truncatum HOM05D002882 ORTHO05D003127 1.2e-06 56.2 66 51.5
CARHR026930 Cardamine hirsuta HOM05D002882 ORTHO05D003127 1.2e-06 56.2 65 49.2
CiPaw.05G108400 Carya illinoinensis HOM05D002882 ORTHO05D003127 1.2e-06 56.2 66 48.5
COL.COLO4_20417 Corchorus olitorius HOM05D002882 ORTHO05D003127 1.2e-06 56.2 65 46.2
Dinv23154 Davidia involucrata HOM05D002882 ORTHO05D003127 1.2e-06 56.2 66 47.0
Eucgr.B03504 Eucalyptus grandis HOM05D002882 ORTHO05D003127 1.2e-06 56.2 66 50.0
Gohir.D01G146600 Gossypium hirsutum HOM05D002882 ORTHO05D003127 1.2e-06 56.2 65 49.2
Peaxi162Scf00518g00316 Petunia axillaris HOM05D002882 ORTHO05D003127 1.2e-06 56.2 65 47.7
SalBow8G0743 Salvia bowleyana HOM05D002882 ORTHO05D003127 1.2e-06 56.2 65 47.7
PGR004G1099 Punica granatum HOM05D002882 ORTHO05D003127 1.5e-06 55.8 66 48.5
TWI38G0237 Tripterygium wilfordii HOM05D002882 ORTHO05D003127 1.5e-06 55.8 66 47.0
CSS0030072 Camellia sinensis var. sinensis HOM05D002882 ORTHO05D003127 2.0e-06 55.5 65 47.7
DCAR_016387 Daucus carota HOM05D002882 ORTHO05D003127 2.0e-06 55.5 68 48.5
Actinidia25567 Actinidia chinensis HOM05D002882 ORTHO05D003127 2.6e-06 55.1 66 47.0
ECA232G0131 Erigeron canadensis HOM05D002882 ORTHO05D003127 2.6e-06 55.1 66 47.0
Hma1.2p1_0014F.1_g009350 Hydrangea macrophylla HOM05D002882 ORTHO05D003127 2.6e-06 55.1 65 46.2
Potri.003G171100 Populus trichocarpa HOM05D002882 ORTHO05D003127 2.6e-06 55.1 66 45.5
C07p17880 Brassica napus HOM05D002882 ORTHO05D003127 3.4e-06 54.7 65 47.7
Lsat_1_v5_gn_4_541 Lactuca sativa HOM05D002882 ORTHO05D003127 3.4e-06 54.7 65 47.7
Hund06096 Selenicereus undatus HOM05D002882 ORTHO05D003127 3.4e-06 54.7 65 47.7
Sc04g0010210 Simmondsia chinensis HOM05D002882 ORTHO05D003127 3.4e-06 54.7 66 45.5
Ciclev10017411m.g Citrus clementina HOM05D002882 ORTHO05D003127 4.4e-06 54.3 66 47.0
Pp3c21_6920 Physcomitrium patens HOM05D002882 ORTHO05D003127 4.4e-06 54.3 65 47.7
QL03p052439 Quercus lobata HOM05D002882 ORTHO05D003127 4.4e-06 54.3 66 47.0
EL10Ac6g13517 Beta vulgaris HOM05D002882 ORTHO05D003127 5.8e-06 53.9 66 43.9
Duzib235G1254 Durio zibethinus HOM05D002882 ORTHO05D003127 5.8e-06 53.9 65 49.2
Eucgr.D01442 Eucalyptus grandis HOM05D002882 ORTHO05D003127 5.8e-06 53.9 53 60.4
CSS0027104 Camellia sinensis var. sinensis HOM05D002882 ORTHO05D003127 7.6e-06 53.5 64 46.9
FAN03G2086 Fragaria x ananassa HOM05D002882 ORTHO05D003127 7.6e-06 53.5 65 49.2
FAN21G2692 Fragaria x ananassa HOM05D002882 ORTHO05D003127 7.6e-06 53.5 65 49.2
FAN27G2176 Fragaria x ananassa HOM05D002882 ORTHO05D003127 7.6e-06 53.5 65 49.2
Thecc.06G237300 Theobroma cacao HOM05D002882 ORTHO05D003127 7.6e-06 53.5 68 47.1
Eucgr.H04633 Eucalyptus grandis HOM05D002882 ORTHO05D003127 9.9e-06 53.1 66 47.0
Glyma.09G012300 Glycine max HOM05D002882 ORTHO05D003127 9.9e-06 53.1 63 44.4


User provided reference genes

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