Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 8.9e-287 989.6 497 100.0
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 1.3e-282 975.7 497 98.8
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 5.4e-276 953.7 497 96.4
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 2.1e-256 888.6 496 89.7
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 2.4e-223 778.9 470 82.8
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.1e-220 770.0 490 77.8
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 1.1e-220 770.0 492 77.2
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 2.5e-220 768.8 488 78.3
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 1.6e-219 766.1 480 79.0
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 1.4e-218 763.1 484 78.3
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 3.3e-217 758.4 487 77.6
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 9.7e-217 756.9 483 76.4
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.7e-216 756.1 482 78.4
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 3.1e-215 751.9 479 78.5
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 1.2e-214 750.0 481 77.8
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 2.0e-214 749.2 482 77.4
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.6e-214 748.8 459 81.7
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 2.6e-214 748.8 482 77.4
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 1.7e-213 746.1 482 75.9
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 5.0e-213 744.6 482 74.9
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 5.0e-213 744.6 475 78.3
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 5.0e-213 744.6 482 77.4
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 8.5e-213 743.8 480 77.1
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 7.2e-212 740.7 480 76.5
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 1.2e-211 740.0 480 75.8
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 2.7e-211 738.8 471 79.0
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 2.7e-211 738.8 471 79.0
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 2.7e-211 738.8 471 79.0
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 3.6e-211 738.4 490 74.1
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 4.7e-211 738.0 479 76.0
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 4.7e-211 738.0 465 78.3
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 6.1e-211 737.6 480 75.8
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 1.4e-210 736.5 471 79.0
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 1.4e-210 736.5 477 75.3
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 2.3e-210 735.7 480 76.2
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 8.8e-210 733.8 472 76.3
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 5.7e-209 731.1 469 78.7
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 5.7e-209 731.1 477 76.3
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 5.7e-209 731.1 469 78.0
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 7.5e-209 730.7 478 75.1
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 9.7e-209 730.3 482 75.5
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 1.7e-208 729.6 477 74.6
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 1.7e-208 729.6 483 73.7
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 2.8e-208 728.8 477 76.7
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 6.3e-208 727.6 479 76.0
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 4.1e-207 724.9 483 75.2
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 1.2e-206 723.4 477 73.6
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 1.6e-206 723.0 483 73.5
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 2.0e-206 722.6 465 77.2
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 2.0e-206 722.6 470 75.7
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 3.5e-206 721.8 475 76.4
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 3.5e-206 721.8 475 76.4
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 3.5e-206 721.8 475 76.4
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 5.9e-206 721.1 479 73.1
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 7.7e-206 720.7 475 76.2
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 2.2e-205 719.2 469 77.0
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 2.2e-205 719.2 480 74.2
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 2.9e-205 718.8 475 76.2
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 2.9e-205 718.8 468 75.6
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 3.8e-205 718.4 482 73.0
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 5.0e-205 718.0 475 76.0
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 5.0e-205 718.0 475 76.0
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 6.5e-205 717.6 475 76.4
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 8.5e-205 717.2 475 76.0
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 1.1e-204 716.8 475 75.8
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 1.5e-204 716.5 474 74.1
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 1.9e-204 716.1 471 76.6
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 3.2e-204 715.3 475 75.6
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 3.2e-204 715.3 471 75.2
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 3.2e-204 715.3 478 73.4
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 4.2e-204 714.9 478 73.8
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 7.2e-204 714.1 475 75.4
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 9.4e-204 713.8 471 75.8
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 1.2e-203 713.4 475 75.2
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 2.7e-203 712.2 475 75.4
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 8.0e-203 710.7 478 73.0
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 1.4e-202 709.9 480 74.2
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 4.0e-202 708.4 478 72.8
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 1.2e-201 706.8 482 73.0
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 5.7e-201 704.5 480 74.0
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.7e-200 703.0 477 71.9
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 8.3e-200 700.7 475 72.0
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.4e-199 699.9 477 71.5
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 5.4e-199 698.0 461 76.1
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 2.0e-198 696.0 477 73.6
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 9.4e-196 687.2 478 70.9
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 2.7e-195 685.6 445 76.2
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 1.0e-194 683.7 477 70.0
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.8e-194 682.9 478 70.9
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 3.0e-194 682.2 479 69.3
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 5.2e-194 681.4 486 68.3
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 6.8e-194 681.0 484 69.2
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 4.4e-193 678.3 483 69.2
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 9.8e-193 677.2 483 68.9
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 1.7e-192 676.4 481 68.6
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 1.7e-192 676.4 479 69.1
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 2.2e-192 676.0 481 68.4
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 2.2e-192 676.0 471 70.1
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.8e-192 675.6 488 70.5
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 3.7e-192 675.2 481 68.6
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 3.7e-192 675.2 479 68.7
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 4.1e-191 671.8 481 68.0
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 7.0e-191 671.0 468 70.5
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 2.7e-190 669.1 475 71.4
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 1.3e-189 666.8 479 67.8
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 5.0e-189 664.8 492 67.1
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 1.5e-188 663.3 476 70.4
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 1.9e-188 662.9 473 67.4
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 3.0e-186 655.6 478 68.6
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 3.3e-180 635.6 473 64.7
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 1.2e-179 633.6 465 66.0
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 3.4e-177 625.5 472 64.0
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.1e-175 620.5 414 73.9
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 9.5e-172 607.4 399 75.7
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 6.2e-171 604.7 470 63.4
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.4e-170 603.6 396 74.2
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 8.3e-168 594.3 382 76.4
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 7.8e-166 587.8 471 62.6
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 4.4e-161 572.0 479 60.8
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 2.1e-158 563.1 402 68.9
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 3.3e-156 555.8 479 59.9
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.4e-151 540.4 391 67.5
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 2.6e-145 519.6 323 78.3
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 2.6e-145 519.6 372 69.4
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 2.3e-133 479.9 340 69.1
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 2.8e-131 473.0 480 48.8
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 2.9e-128 463.0 486 48.8
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.6e-126 457.2 464 48.7
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 2.6e-121 439.9 296 73.0
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 1.2e-113 414.5 513 41.9
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 7.9e-110 401.7 523 40.0
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.4e-101 374.4 227 82.8
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.4e-90 337.0 202 83.7
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 3.0e-69 266.9 200 66.0
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 2.6e-68 263.8 180 73.9
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 1.3e-64 251.5 152 83.6
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 9.8e-60 235.3 173 66.5
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.5e-55 220.7 131 80.9
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 1.3e-43 181.8 170 55.9
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 9.9e-36 155.6 86 84.9
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 2.7e-33 147.5 96 74.0
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 7.8e-33 146.0 150 52.7
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 2.3e-32 144.4 84 78.6
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 1.4e-29 135.2 100 67.0
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 1.2e-28 132.1 82 74.4
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 4.9e-27 126.7 110 58.2
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 4.8e-22 110.2 71 74.6
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.9e-19 100.9 475 24.4
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 1.0e-16 92.4 55 80.0
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 1.3e-16 92.0 496 23.8
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 5.3e-13 80.1 67 55.2
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 5.3e-13 80.1 67 55.2
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 2.1e-09 68.2 46 69.6
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 3.3e-07 60.8 46 60.9
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 3.3e-07 60.8 45 60.0
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 4.3e-07 60.5 46 58.7


User provided reference genes

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