Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 1.1e-89 333.2 159 100.0
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 6.5e-82 307.4 150 96.7
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 5.5e-81 304.3 152 94.7
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 4.8e-69 264.6 160 78.8
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 1.1e-60 236.9 149 77.9
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 8.9e-55 217.2 157 70.7
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 1.1e-49 200.3 155 66.5
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 2.9e-45 185.7 148 60.1
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 7.0e-44 181.0 152 57.9
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 6.6e-42 174.5 153 58.8
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 1.8e-39 166.4 144 54.9
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 1.5e-38 163.3 148 54.1
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 3.4e-38 162.2 151 52.3
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 9.8e-38 160.6 146 52.7
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 9.8e-38 160.6 146 52.7
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 2.9e-37 159.1 151 53.6
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 2.9e-37 159.1 144 54.2
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 2.4e-36 156.0 153 51.6
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 3.2e-36 155.6 151 51.0
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 9.2e-36 154.1 148 52.0
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 1.2e-35 153.7 135 56.3
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.2e-35 153.7 154 51.3
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.6e-35 153.3 148 50.7
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 3.5e-35 152.1 138 54.3
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 1.7e-34 149.8 158 49.4
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 3.0e-34 149.1 160 49.4
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 6.6e-34 147.9 153 49.7
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 1.1e-33 147.1 150 50.0
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 2.5e-33 146.0 150 47.3
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 4.3e-33 145.2 158 49.4
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 5.6e-33 144.8 97 70.1
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 2.1e-32 142.9 157 47.1
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 2.8e-32 142.5 157 47.8
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 2.8e-32 142.5 146 50.0
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 3.6e-32 142.1 145 49.0
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 3.6e-32 142.1 153 49.7
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 4.7e-32 141.7 150 48.0
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 4.7e-32 141.7 157 49.0
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 6.2e-32 141.4 157 46.5
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 6.2e-32 141.4 146 48.6
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 8.1e-32 141.0 156 46.2
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 1.8e-31 139.8 160 47.5
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 1.8e-31 139.8 157 46.5
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 2.3e-31 139.4 162 46.9
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 4.0e-31 138.7 153 45.8
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 4.0e-31 138.7 154 46.1
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 5.2e-31 138.3 140 50.7
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 6.8e-31 137.9 146 48.6
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 8.9e-31 137.5 154 47.4
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 8.9e-31 137.5 144 49.3
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.2e-30 137.1 157 45.9
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 2.0e-30 136.3 145 49.0
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 2.6e-30 136.0 156 44.2
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 3.4e-30 135.6 146 50.7
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 4.4e-30 135.2 156 44.2
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 5.8e-30 134.8 150 49.3
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 5.8e-30 134.8 160 44.4
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 5.8e-30 134.8 145 46.9
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 7.6e-30 134.4 148 47.3
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 7.6e-30 134.4 148 47.3
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 9.9e-30 134.0 156 46.2
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 1.3e-29 133.7 156 46.8
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.3e-29 133.7 149 45.6
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.3e-29 133.7 157 44.6
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 1.7e-29 133.3 158 47.5
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 2.2e-29 132.9 148 48.0
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 2.9e-29 132.5 158 43.7
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 2.9e-29 132.5 158 43.7
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 2.9e-29 132.5 156 46.2
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 4.9e-29 131.7 139 43.9
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 8.4e-29 131.0 154 46.1
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 1.1e-28 130.6 155 45.2
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 1.1e-28 130.6 146 47.3
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 1.1e-28 130.6 139 43.2
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 1.4e-28 130.2 158 43.0
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 1.4e-28 130.2 157 47.1
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 1.4e-28 130.2 155 45.8
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 1.9e-28 129.8 154 47.4
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 2.4e-28 129.4 143 42.7
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 2.4e-28 129.4 156 44.2
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 3.2e-28 129.0 143 47.6
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 4.1e-28 128.6 155 45.2
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 5.4e-28 128.3 155 44.5
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 7.1e-28 127.9 155 44.5
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 9.2e-28 127.5 142 46.5
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.2e-27 127.1 146 46.6
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 1.6e-27 126.7 144 45.1
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 2.7e-27 125.9 148 45.9
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 2.7e-27 125.9 161 41.6
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 3.5e-27 125.6 163 44.2
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 4.6e-27 125.2 154 40.9
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 1.3e-26 123.6 147 48.3
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 1.3e-26 123.6 146 44.5
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 2.3e-26 122.9 146 43.8
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 2.3e-26 122.9 140 46.4
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 3.0e-26 122.5 144 39.6
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 5.1e-26 121.7 154 40.9
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 8.6e-26 120.9 147 46.3
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.1e-25 120.6 142 42.3
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 1.1e-25 120.6 148 45.9
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 1.1e-25 120.6 151 44.4
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 1.5e-25 120.2 157 41.4
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 1.5e-25 120.2 161 39.8
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 1.5e-25 120.2 156 45.5
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 1.5e-25 120.2 149 43.6
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 2.5e-25 119.4 146 43.2
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 3.3e-25 119.0 142 40.8
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 4.3e-25 118.6 148 45.3
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 2.1e-24 116.3 143 40.6
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 2.1e-24 116.3 138 42.0
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 3.6e-24 115.5 142 41.5
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 4.7e-24 115.2 135 40.7
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 6.2e-24 114.8 142 40.1
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 6.2e-24 114.8 142 40.8
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 1.1e-23 114.0 142 40.1
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 1.1e-23 114.0 143 40.6
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 1.8e-23 113.2 157 40.1
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 2.4e-23 112.8 142 39.4
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 2.4e-23 112.8 142 39.4
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 3.1e-23 112.5 143 39.9
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 4.0e-23 112.1 163 41.1
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 5.2e-23 111.7 142 39.4
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 5.2e-23 111.7 142 39.4
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 5.2e-23 111.7 147 45.6
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 6.8e-23 111.3 142 38.0
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.5e-22 110.2 143 40.6
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.5e-22 110.2 142 40.1
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 2.0e-22 109.8 142 39.4
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 4.4e-22 108.6 145 39.3
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 4.4e-22 108.6 143 39.9
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 4.4e-22 108.6 145 39.3
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 4.4e-22 108.6 143 39.9
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 4.4e-22 108.6 142 42.3
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 5.8e-22 108.2 139 40.3
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 5.8e-22 108.2 142 37.3
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 7.6e-22 107.8 142 38.0
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 9.9e-22 107.5 145 38.6
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 9.9e-22 107.5 145 39.3
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 9.9e-22 107.5 145 38.6
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.3e-21 107.1 139 40.3
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.3e-21 107.1 145 38.6
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 2.2e-21 106.3 142 38.7
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 2.9e-21 105.9 145 39.3
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 4.9e-21 105.1 141 40.4
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 6.4e-21 104.8 145 38.6
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 6.4e-21 104.8 142 37.3
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 8.4e-21 104.4 142 36.6
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.1e-20 104.0 133 42.9
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.4e-20 103.6 142 37.3
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 1.4e-20 103.6 145 37.9
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 1.4e-20 103.6 141 38.3
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.9e-20 103.2 139 38.8
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.9e-20 103.2 145 37.9
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 4.2e-20 102.1 145 37.9
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 5.4e-20 101.7 146 35.6
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 7.1e-20 101.3 145 37.9
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 1.2e-19 100.5 146 36.3
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 1.6e-19 100.1 98 50.0
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.6e-19 100.1 146 36.3
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 2.1e-19 99.8 140 39.3
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 2.7e-19 99.4 142 36.6
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 4.6e-19 98.6 142 36.6
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 4.6e-19 98.6 142 36.6
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 6.0e-19 98.2 149 36.2
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 7.8e-19 97.8 149 36.2
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 3.9e-18 95.5 142 35.2
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 3.9e-18 95.5 142 35.2
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 3.9e-18 95.5 142 35.2
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 3.9e-18 95.5 142 35.2
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 3.9e-18 95.5 142 35.2
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 1.9e-17 93.2 142 35.2
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 2.5e-17 92.8 132 35.6
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 4.8e-16 88.6 102 45.1
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 8.1e-16 87.8 103 42.7
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 5.3e-15 85.1 90 43.3
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 1.7e-13 80.1 146 34.2
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 1.1e-12 77.4 150 35.3
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 5.4e-12 75.1 79 46.8


User provided reference genes

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