Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 8.9e-120 433.7 236 100.0
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 4.8e-113 411.4 237 95.4
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 1.1e-106 390.2 237 91.6
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 2.2e-86 322.8 238 79.0
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 6.1e-84 314.7 239 79.1
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 1.3e-83 313.5 237 77.2
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 1.8e-59 233.4 236 60.2
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 2.3e-59 233.0 236 61.4
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 1.1e-58 230.7 232 60.3
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 7.5e-58 228.0 198 68.2
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 1.3e-57 227.3 235 60.0
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 1.7e-57 226.9 191 66.5
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 1.1e-56 224.2 201 64.2
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 2.4e-56 223.0 195 62.6
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 3.1e-56 222.6 199 65.3
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 7.0e-56 221.5 200 62.5
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 2.0e-55 219.9 230 58.3
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 4.5e-55 218.8 211 60.2
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 1.0e-54 217.6 186 66.1
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 1.0e-54 217.6 189 67.2
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 1.3e-54 217.2 215 60.5
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 3.8e-54 215.7 202 62.9
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 6.5e-54 214.9 196 62.8
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 8.5e-54 214.5 197 64.5
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 1.1e-53 214.2 181 66.9
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 5.5e-53 211.8 199 62.8
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 7.2e-53 211.5 182 66.5
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 1.2e-52 210.7 202 63.9
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 1.6e-52 210.3 229 52.8
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 2.1e-52 209.9 192 63.0
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 3.6e-52 209.1 232 55.6
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 6.1e-52 208.4 235 56.2
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 8.0e-52 208.0 189 65.6
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 8.0e-52 208.0 194 61.9
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 1.0e-51 207.6 190 63.2
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 1.8e-51 206.8 215 58.6
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 6.8e-51 204.9 190 60.5
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.2e-50 204.1 196 62.2
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 1.5e-50 203.8 196 60.7
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 2.0e-50 203.4 271 50.2
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 2.0e-50 203.4 234 55.6
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 2.6e-50 203.0 234 56.8
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 2.6e-50 203.0 187 65.8
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 5.7e-50 201.8 160 71.9
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 7.5e-50 201.4 187 57.8
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 9.8e-50 201.1 187 59.4
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 9.8e-50 201.1 187 59.9
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 2.8e-49 199.5 179 62.0
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 3.7e-49 199.1 209 56.9
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 3.7e-49 199.1 206 59.2
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 1.1e-48 197.6 207 56.5
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 1.4e-48 197.2 210 56.7
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 4.1e-48 195.7 243 49.0
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 9.1e-48 194.5 209 56.0
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 1.6e-47 193.7 208 56.2
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.6e-47 193.7 202 57.9
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 1.6e-47 193.7 223 51.6
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 1.6e-47 193.7 203 58.1
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 2.7e-47 193.0 203 59.1
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 3.5e-47 192.6 197 57.4
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 4.5e-47 192.2 209 55.5
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 5.9e-47 191.8 220 50.0
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 5.9e-47 191.8 199 60.8
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 7.7e-47 191.4 188 55.3
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 2.9e-46 189.5 197 57.4
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 2.9e-46 189.5 196 57.7
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 3.8e-46 189.1 195 53.8
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 5.0e-46 188.7 209 52.6
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 5.0e-46 188.7 190 54.2
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 6.5e-46 188.3 204 57.4
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 1.1e-45 187.6 199 54.3
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 1.1e-45 187.6 194 59.8
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 1.5e-45 187.2 188 56.9
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 1.9e-45 186.8 212 52.4
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 9.4e-45 184.5 187 54.0
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 2.7e-44 183.0 200 54.5
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 6.1e-44 181.8 200 55.0
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 6.8e-43 178.3 213 49.8
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 1.2e-42 177.6 194 50.5
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 1.5e-42 177.2 145 69.7
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 2.6e-42 176.4 203 51.7
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 2.6e-42 176.4 224 48.2
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 4.4e-42 175.6 173 57.8
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 3.7e-41 172.6 221 48.4
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 1.1e-40 171.0 201 48.8
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 2.4e-40 169.9 204 52.0
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 7.0e-40 168.3 231 45.5
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 2.0e-39 166.8 230 45.7
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 2.0e-39 166.8 221 48.4
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 3.5e-39 166.0 221 48.0
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.7e-38 163.7 190 50.5
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 1.7e-38 163.7 203 48.8
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 5.0e-38 162.2 213 49.3
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 6.6e-38 161.8 214 49.1
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 1.1e-37 161.0 213 49.3
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 1.9e-37 160.2 228 46.5
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 1.9e-37 160.2 228 46.5
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 1.9e-37 160.2 233 46.8
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 2.5e-37 159.8 147 60.5
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 5.6e-37 158.7 222 45.9
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 9.5e-37 157.9 171 52.0
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 6.1e-36 155.2 167 53.3
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.0e-35 154.5 200 50.0
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 3.0e-35 152.9 222 45.9
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 3.0e-35 152.9 126 68.3
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 6.8e-35 151.8 188 49.5
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.2e-34 151.0 220 45.9
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 1.5e-34 150.6 192 48.4
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 2.6e-34 149.8 173 51.4
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 4.4e-34 149.1 212 45.3
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 4.4e-34 149.1 222 44.1
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 4.4e-34 149.1 198 46.5
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 1.3e-33 147.5 104 80.8
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 1.7e-33 147.1 190 50.5
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 7.0e-32 141.7 118 66.1
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 7.8e-31 138.3 194 50.5
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 1.7e-30 137.1 222 42.8
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 5.0e-30 135.6 228 44.7
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 5.0e-30 135.6 220 44.1
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 5.0e-30 135.6 94 80.9
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 1.5e-29 134.0 208 43.3
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 1.5e-29 134.0 208 43.3
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 1.5e-29 134.0 208 43.3
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 1.2e-28 131.0 272 39.0
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 3.6e-28 129.4 221 42.5
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 4.0e-27 125.9 182 45.6
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 3.4e-26 122.9 134 55.2
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 7.5e-26 121.7 223 38.1
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 6.4e-25 118.6 219 36.1
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 2.7e-23 113.2 233 40.3
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 6.0e-23 112.1 202 40.1
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 1.0e-22 111.3 227 37.9
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 1.1e-21 107.8 102 61.8
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 7.3e-21 105.1 172 36.0
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 6.8e-19 98.6 105 55.2
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 2.0e-18 97.1 105 54.3
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 9.8e-18 94.7 110 53.6
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 2.4e-16 90.1 156 41.0
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 2.1e-15 87.0 85 65.9
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 1.7e-14 84.0 106 50.9
Pp3c6_9570 Physcomitrium patens HOM05D004935 ORTHO05D005676 7.3e-13 78.6 149 34.2
MSTRG.15645 Avicennia marina HOM05D004935 ORTHO05D005676 1.2e-12 77.8 76 50.0
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 2.1e-12 77.0 81 59.3
SEGI_39153 Sequoiadendron giganteum HOM05D004935 ORTHO05D005676 4.7e-12 75.9 114 44.7
CSS0034638 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 2.2e-09 67.0 48 64.6
EL10Ac2g03210 Beta vulgaris HOM05D004935 ORTHO05D005676 2.9e-09 66.6 56 55.4
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.9e-08 63.9 77 45.5
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 1.2e-07 61.2 80 40.0
DCAR_003417 Daucus carota HOM05D004935 ORTHO05D005676 1.6e-07 60.8 114 36.8
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 4.6e-07 59.3 84 40.5


User provided reference genes

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