Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g006460 Solanum pennellii HOM05D007449 ORTHO05D009504 3.3e-89 331.6 165 100.0
Solyc11g011610.2 Solanum lycopersicum HOM05D007449 ORTHO05D009504 2.7e-86 322.0 165 97.6
PGSC0003DMG400013314 Solanum tuberosum HOM05D007449 ORTHO05D009504 5.2e-82 307.8 154 98.7
Solyc11g011620.3 Solanum lycopersicum HOM05D007449 ORTHO05D009504 1.5e-81 306.2 152 98.0
CAN.G222.124 Capsicum annuum HOM05D007449 ORTHO05D009504 5.4e-79 297.7 165 89.7
Nitab4.5_0006598g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 8.5e-77 290.4 167 88.6
Nitab4.5_0005124g0020 Nicotiana tabacum HOM05D007449 ORTHO05D009504 3.6e-75 285.0 167 87.4
Nitab4.5_0001438g0030 Nicotiana tabacum HOM05D007449 ORTHO05D009504 3.0e-74 282.0 167 86.2
Peaxi162Scf00124g01733 Petunia axillaris HOM05D007449 ORTHO05D009504 1.2e-70 270.0 168 81.5
ECA236G3627 Erigeron canadensis HOM05D007449 ORTHO05D009504 2.2e-64 249.2 153 79.7
Lsat_1_v5_gn_7_111001 Lactuca sativa HOM05D007449 ORTHO05D009504 4.9e-64 248.1 162 76.5
HanXRQChr11g0335831 Helianthus annuus HOM05D007449 ORTHO05D009504 1.4e-63 246.5 154 79.2
Aqoxy5G02136 Aquilegia oxysepala HOM05D007449 ORTHO05D009504 1.2e-62 243.4 161 73.9
Dinv42450 Davidia involucrata HOM05D007449 ORTHO05D009504 2.7e-62 242.3 165 73.9
Oeu002792.1 Olea europaea HOM05D007449 ORTHO05D009775 2.7e-62 242.3 153 78.4
SGA_v2.0_scaffold49G18211 Striga asiatica HOM05D007449 ORTHO05D009504 4.6e-62 241.5 165 73.9
Migut.H01650 Erythranthe guttata HOM05D007449 ORTHO05D009504 5.9e-62 241.1 153 77.8
MSTRG.13092 Avicennia marina HOM05D007449 ORTHO05D009504 2.3e-61 239.2 162 74.7
CSS0049228 Camellia sinensis var. sinensis HOM05D007449 ORTHO05D009504 5.0e-61 238.0 153 75.8
Cc08_g13080 Coffea canephora HOM05D007449 ORTHO05D009504 5.6e-60 234.6 165 71.5
FAN11G1945 Fragaria x ananassa HOM05D007449 ORTHO05D009504 9.5e-60 233.8 153 73.2
Nn1g09860 Nelumbo nucifera HOM05D007449 ORTHO05D009504 9.5e-60 233.8 153 76.5
GSVIVG01036691001 Vitis vinifera HOM05D007449 ORTHO05D009504 1.2e-59 233.4 153 75.2
Nitab4.5_0009898g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 1.6e-59 233.0 167 75.4
Hma1.2p1_1417F.1_g282110 Hydrangea macrophylla HOM05D007449 ORTHO05D009504 2.8e-59 232.3 153 76.5
TWI38G0722 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 3.6e-59 231.9 154 72.1
TWI38G2117 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 3.6e-59 231.9 154 72.1
ClCG02G018850 Citrullus lanatus HOM05D007449 ORTHO05D009504 4.7e-59 231.5 153 72.5
COL.COLO4_32270 Corchorus olitorius HOM05D007449 ORTHO05D009504 4.7e-59 231.5 153 71.9
MELO3C019608.2 Cucumis melo HOM05D007449 ORTHO05D009504 4.7e-59 231.5 153 75.2
CsaV3_6G013330 Cucumis sativus L. HOM05D007449 ORTHO05D009504 4.7e-59 231.5 153 75.2
Potri.010G175600 Populus trichocarpa HOM05D007449 ORTHO05D009504 4.7e-59 231.5 157 70.1
FvH4_3g13790 Fragaria vesca HOM05D007449 ORTHO05D009504 8.0e-59 230.7 153 73.2
FAN21G0170 Fragaria x ananassa HOM05D007449 ORTHO05D009504 1.0e-58 230.3 153 73.2
MBI02_g42634_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 1.4e-58 229.9 153 75.8
Glyma.08G160000 Glycine max HOM05D007449 ORTHO05D009504 1.8e-58 229.6 157 70.1
FAN16G1652 Fragaria x ananassa HOM05D007449 ORTHO05D009504 2.3e-58 229.2 153 71.9
MD05G1240900 Malus domestica HOM05D007449 ORTHO05D009504 2.3e-58 229.2 153 72.5
RcHm_v2.0_Chr5g0022981 Rosa chinensis HOM05D007449 ORTHO05D009504 3.1e-58 228.8 153 72.5
Sed0001463 Sechium edule HOM05D007449 ORTHO05D009504 3.1e-58 228.8 153 73.2
CiPaw.15G111100 Carya illinoinensis HOM05D007449 ORTHO05D009504 1.2e-57 226.9 153 71.2
Glyma.15G266900 Glycine max HOM05D007449 ORTHO05D009504 1.2e-57 226.9 157 69.4
CANSAT56G2387 Cannabis sativa HOM05D007449 ORTHO05D009504 2.6e-57 225.7 156 71.2
Rhsim10G0133000 Rhododendron simsii HOM05D007449 ORTHO05D009504 2.6e-57 225.7 193 63.2
Prupe.4G124700 Prunus persica HOM05D007449 ORTHO05D009504 3.4e-57 225.3 153 71.2
arahy.Tifrunner.gnm1.ann1.4RN51I Arachis hypogaea HOM05D007449 ORTHO05D009504 4.4e-57 224.9 160 68.8
arahy.Tifrunner.gnm1.ann1.VWXD6N Arachis hypogaea HOM05D007449 ORTHO05D009504 4.4e-57 224.9 160 68.8
Atru.chr1.9 Acer truncatum HOM05D007449 ORTHO05D009504 5.8e-57 224.6 153 71.2
Ciclev10006094m.g Citrus clementina HOM05D007449 ORTHO05D009504 5.8e-57 224.6 154 70.1
Sabra10G0135300 Salix brachista HOM05D007449 ORTHO05D009504 5.8e-57 224.6 153 69.9
Gohir.A13G127500 Gossypium hirsutum HOM05D007449 ORTHO05D009504 1.7e-56 223.0 153 70.6
CDE02G1458 Ceratophyllum demersum HOM05D001125 ORTHO05D003189 2.2e-56 222.6 153 71.9
THA.LOC104812400 Tarenaya hassleriana HOM05D007449 ORTHO05D009504 2.2e-56 222.6 153 71.9
Psat6g047080 Pisum sativum HOM05D007449 ORTHO05D009504 4.9e-56 221.5 152 70.4
Zm00001eb156770 Zea mays HOM05D007449 ORTHO05D009504 4.9e-56 221.5 152 69.1
Duzib213G0878 Durio zibethinus HOM05D007449 ORTHO05D009504 6.4e-56 221.1 153 69.9
Gohir.D13G131200 Gossypium hirsutum HOM05D007449 ORTHO05D009504 8.3e-56 220.7 153 69.9
SEGI_20644 Sequoiadendron giganteum HOM05D007449 ORTHO05D009504 1.4e-55 219.9 153 69.3
Os01g0679600 Oryza sativa ssp. japonica HOM05D007449 ORTHO05D009504 2.4e-55 219.2 152 68.4
TPR.G11303 Trifolium pratense HOM05D007449 ORTHO05D009504 4.1e-55 218.4 152 69.7
Gorai.013G147200 Gossypium raimondii HOM05D007449 ORTHO05D009504 5.4e-55 218.0 153 69.3
Lalb_Chr01g0015631 Lupinus albus HOM05D007449 ORTHO05D009504 5.4e-55 218.0 157 67.5
Medtr1g046590 Medicago truncatula HOM05D007449 ORTHO05D009504 5.4e-55 218.0 157 66.9
Cfa017774 Carpinus fangiana HOM05D007449 ORTHO05D009504 2.0e-54 216.1 151 67.5
TAR629G0115 Trochodendron aralioides HOM05D007449 ORTHO05D009504 4.6e-54 214.9 187 59.9
vmacro12790 Vaccinium macrocarpon HOM05D007449 ORTHO05D009504 7.8e-54 214.2 223 54.7
Manes.16G050159 Manihot esculenta HOM05D007449 ORTHO05D009504 2.3e-53 212.6 153 66.7
ATR0109G018 Amborella trichopoda HOM05D007449 ORTHO05D009504 5.0e-53 211.5 154 68.8
Thhalv10019230m.g Eutrema salsugineum HOM05D007449 ORTHO05D009504 5.0e-53 211.5 153 69.9
HPP92_008133 Vanilla planifolia HOM05D007449 ORTHO05D009504 5.0e-53 211.5 153 71.2
AT1G79260 Arabidopsis thaliana HOM05D007449 ORTHO05D009504 6.6e-53 211.1 153 68.6
Carub.0002s2613 Capsella rubella HOM05D007449 ORTHO05D009504 8.6e-53 210.7 153 68.6
HPP92_008185 Vanilla planifolia HOM05D007449 ORTHO05D009504 1.1e-52 210.3 153 70.6
Eucgr.F04482 Eucalyptus grandis HOM05D007449 ORTHO05D009504 1.2e-51 206.8 151 68.2
AL2G39860 Arabidopsis lyrata HOM05D007449 ORTHO05D009504 1.6e-51 206.5 155 67.7
BcaB05g25191 Brassica carinata HOM05D007449 ORTHO05D009504 2.8e-51 205.7 153 65.4
C02p36470 Brassica napus HOM05D007449 ORTHO05D009504 4.7e-51 204.9 153 64.7
Sp5g34340 Schrenkiella parvula HOM05D007449 ORTHO05D009504 4.7e-51 204.9 149 67.8
Actinidia33338 Actinidia chinensis HOM05D007449 ORTHO05D009504 6.2e-51 204.5 133 76.7
BcaC03g15880 Brassica carinata HOM05D007449 ORTHO05D009504 6.2e-51 204.5 153 64.7
BolC2t09646H Brassica oleracea HOM05D007449 ORTHO05D009504 1.1e-50 203.8 153 64.1
BraA02t07273Z Brassica rapa HOM05D007449 ORTHO05D009504 1.4e-50 203.4 153 64.7
Phvul.005G043600 Phaseolus vulgaris HOM05D007449 ORTHO05D009504 6.8e-50 201.1 157 63.7
A02p22730 Brassica napus HOM05D007449 ORTHO05D009504 1.2e-49 200.3 153 64.1
AagrBONN_evm.TU.Sc2ySwM_362.2319 Anthoceros agrestis HOM05D007449 ORTHO05D009504 4.4e-49 198.4 152 62.5
PGR031G0327 Punica granatum HOM05D007449 ORTHO05D009504 1.7e-48 196.4 157 62.4
Aa31LG4G1730 Aethionema arabicum HOM05D007449 ORTHO05D009504 3.7e-48 195.3 170 59.4
Mapoly0054s0111 Marchantia polymorpha HOM05D007449 ORTHO05D009504 4.6e-46 188.3 151 61.6
SMO364G0724 Selaginella moellendorffii HOM05D007449 ORTHO05D009504 6.0e-46 188.0 155 62.6
arahy.Tifrunner.gnm1.ann1.FIRH26 Arachis hypogaea HOM05D007449 ORTHO05D009504 3.9e-45 185.3 124 69.4
QL04p096242 Quercus lobata HOM05D007449 ORTHO05D009504 5.1e-45 184.9 114 74.6
QL04p096050 Quercus lobata HOM05D007449 ORTHO05D009504 1.5e-44 183.3 113 74.3
Haze_18462 Corylus avellana HOM05D007449 ORTHO05D009504 1.7e-40 169.9 113 69.0
Pp3c6_12570 Physcomitrium patens HOM05D007449 ORTHO05D009504 1.2e-38 163.7 114 66.7
FAN25G3406 Fragaria x ananassa HOM05D007449 ORTHO05D009504 6.0e-38 161.4 108 73.1
DCAR_013701 Daucus carota HOM05D007449 ORTHO05D009504 1.5e-36 156.8 89 78.7
Ca_03327_v3 Cicer arietinum L. HOM05D007449 ORTHO05D009504 1.2e-35 153.7 110 70.0
Lj2A6T27 Lonicera japonica HOM05D007449 ORTHO05D009504 2.8e-35 152.5 91 78.0
MBI02_g17887_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 3.1e-34 149.1 153 56.9
Nitab4.5_0001650g0100 Nicotiana tabacum HOM05D000057 ORTHO05D000021 1.2e-30 137.1 75 89.3
Nitab4.5_0007284g0070 Nicotiana tabacum HOM05D000057 ORTHO05D000021 1.3e-24 117.1 63 90.5
Aa31LG4G1740 Aethionema arabicum HOM05D007449 ORTHO05D009504 1.1e-20 104.0 153 40.5
TPR.G35695 Trifolium pratense HOM05D000290 ORTHO05D044376 3.5e-14 82.4 71 60.6
MBI02_g30541_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 2.5e-12 76.3 81 61.7
Gohir.D03G088000 Gossypium hirsutum HOM05D007449 ORTHO05D000032 1.3e-11 73.9 53 64.2
Glyma.14G034600 Glycine max HOM05D007449 ORTHO05D009504 6.9e-10 68.2 47 59.6


User provided reference genes

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