Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 0.0e+00 1308.1 671 100.0
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 0.0e+00 1299.6 671 99.1
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 0.0e+00 1152.5 670 88.7
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 0.0e+00 1116.3 649 87.7
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 3.4e-297 1024.6 648 81.5
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 3.6e-291 1004.6 664 80.1
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 3.0e-277 958.4 513 96.5
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 7.3e-276 953.7 669 71.0
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 4.1e-271 937.9 647 70.6
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 5.6e-268 927.5 672 68.6
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 6.2e-267 924.1 672 68.5
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 1.3e-264 916.4 669 67.7
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 8.7e-261 903.7 660 69.2
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 1.1e-260 903.3 669 67.3
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 3.3e-260 901.7 672 67.7
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 4.3e-260 901.4 672 66.1
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 1.3e-259 899.8 665 67.5
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 4.5e-257 891.3 665 67.1
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 5.8e-257 891.0 669 67.9
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 1.7e-256 889.4 669 65.6
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 2.9e-256 888.6 665 66.3
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 3.8e-256 888.3 669 65.6
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 8.4e-256 887.1 670 67.6
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 4.2e-255 884.8 662 66.2
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 4.2e-255 884.8 660 66.7
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 4.2e-255 884.8 644 68.8
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 7.1e-255 884.0 670 67.2
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 2.7e-254 882.1 665 66.0
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 2.3e-253 879.0 672 65.2
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 3.9e-253 878.2 670 65.1
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 6.7e-253 877.5 656 65.7
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 9.6e-252 873.6 723 61.8
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 2.8e-251 872.1 668 64.4
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 4.8e-251 871.3 665 65.7
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 8.1e-251 870.5 667 66.4
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 9.0e-250 867.1 664 64.6
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 2.0e-249 865.9 660 66.4
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 4.5e-249 864.8 690 62.9
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 7.6e-249 864.0 668 65.4
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 1.3e-248 863.2 665 64.7
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 2.4e-247 859.0 671 65.7
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 4.2e-247 858.2 642 66.4
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 7.9e-246 854.0 668 63.9
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 1.8e-245 852.8 671 63.5
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 1.3e-243 846.7 642 65.0
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 1.6e-243 846.3 663 64.6
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 2.8e-243 845.5 660 66.5
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 6.2e-243 844.3 669 63.4
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 1.8e-242 842.8 738 59.8
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 3.1e-242 842.0 651 64.4
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 4.0e-242 841.6 647 64.1
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 9.0e-242 840.5 677 62.3
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 1.7e-240 836.3 664 64.3
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 1.1e-239 833.6 663 62.0
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 1.1e-239 833.6 685 61.8
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 1.9e-239 832.8 693 61.3
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 3.2e-239 832.0 655 63.1
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 7.1e-239 830.9 665 62.3
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 9.3e-239 830.5 665 62.1
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 4.6e-238 828.2 665 62.6
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 1.3e-237 826.6 670 61.9
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 2.3e-237 825.9 681 62.1
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 6.7e-237 824.3 663 61.5
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 1.1e-236 823.5 631 67.2
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 3.3e-236 822.0 654 63.9
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 1.3e-235 820.1 670 62.1
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 3.1e-234 815.5 671 61.0
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 3.1e-234 815.5 666 62.9
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 9.0e-234 813.9 572 71.0
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 7.6e-233 810.8 634 63.1
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 1.7e-232 809.7 667 60.9
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 5.0e-232 808.1 648 65.0
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 8.5e-232 807.4 668 61.2
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 3.2e-231 805.4 668 61.2
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 2.1e-230 802.7 580 69.0
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 4.6e-230 801.6 721 57.4
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 3.0e-229 798.9 672 60.3
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 3.9e-229 798.5 692 58.5
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 4.8e-227 791.6 638 63.3
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.8e-226 789.6 668 62.1
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 6.9e-226 787.7 740 56.1
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 5.0e-224 781.6 672 59.4
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 1.5e-220 770.0 647 61.2
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.2e-219 766.1 574 67.2
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 1.2e-214 750.4 699 57.1
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 1.0e-213 747.3 704 56.5
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 2.2e-211 739.6 577 64.1
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 7.7e-209 731.1 694 55.9
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 1.0e-208 730.7 557 64.6
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 1.3e-208 730.3 668 57.0
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 1.5e-207 726.9 668 57.0
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 1.8e-205 719.9 651 56.5
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 6.7e-205 718.0 670 54.9
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 3.0e-197 692.6 676 56.1
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 5.2e-197 691.8 665 56.5
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 3.1e-194 682.6 668 54.9
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 5.0e-184 648.7 624 55.4
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 3.7e-179 632.5 494 65.6
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.8e-173 613.6 594 55.4
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 1.1e-162 577.8 664 46.7
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 1.7e-160 570.5 647 47.6
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 1.1e-143 514.6 351 70.7
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 2.2e-139 500.4 679 43.0
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 5.6e-127 459.1 560 45.4
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 2.5e-114 417.2 308 68.2
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 3.9e-96 356.7 648 38.4
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 2.6e-87 327.4 298 56.4
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 7.2e-82 309.3 355 50.7
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 3.5e-76 290.4 659 32.3
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.2e-70 271.2 240 60.4
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 3.6e-65 253.8 330 43.9
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 2.8e-49 201.1 179 53.6
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 5.8e-47 193.4 327 35.2
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 5.1e-43 180.3 750 27.1
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 4.9e-38 163.7 309 32.7
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 8.4e-30 136.3 113 60.2
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 4.2e-29 134.0 103 60.2
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 5.1e-27 127.1 187 41.2
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 4.0e-24 117.5 110 50.9
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 9.9e-23 112.8 115 53.9
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 1.3e-19 102.4 83 57.8
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 1.6e-17 95.5 102 49.0
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.8e-17 94.7 93 51.6
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 6.5e-14 83.6 68 58.8
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 7.9e-12 76.6 65 53.8
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 3.9e-11 74.3 50 70.0
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 5.1e-11 73.9 47 74.5
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 8.7e-11 73.2 64 59.4
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 1.5e-10 72.4 42 73.8
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 2.5e-10 71.6 62 58.1
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 2.5e-10 71.6 62 58.1
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 3.3e-10 71.2 42 73.8
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 9.6e-10 69.7 47 72.3
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 2.8e-09 68.2 42 76.2
QL02p059474 Quercus lobata HOM05D002544 ORTHO05D007856 1.4e-08 65.9 35 82.9
SGA_v2.0_scaffold17G07933 Striga asiatica HOM05D002544 ORTHO05D399483 5.0e-06 57.4 36 63.9


User provided reference genes

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