Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1464.9 739 100.0
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1453.0 740 99.3
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1452.2 739 98.9
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1394.8 743 94.1
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1382.1 746 93.0
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1380.5 743 93.5
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1295.8 745 85.5
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1286.6 747 84.7
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1283.9 744 84.3
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1283.1 744 85.3
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1281.9 747 84.5
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1280.0 745 85.6
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1279.6 743 85.6
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1278.8 745 86.2
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1278.5 740 85.3
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1273.8 777 82.5
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1273.5 747 83.8
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1271.9 748 84.0
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1266.9 748 83.3
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1265.4 747 84.5
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1264.6 740 83.6
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1262.7 740 83.5
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1261.9 747 84.2
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1259.2 739 83.4
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1258.8 746 82.7
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1258.0 749 83.2
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1256.9 747 83.1
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1256.5 746 83.2
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1254.6 741 83.9
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1254.2 742 83.7
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1253.8 743 84.4
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1253.8 742 83.3
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1253.0 747 82.2
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1252.7 736 84.0
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1252.3 747 82.3
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1251.9 746 82.4
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1251.5 747 83.4
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1251.5 747 82.3
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1251.1 747 82.9
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1251.1 745 83.6
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1251.1 745 83.6
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1250.0 740 83.6
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1249.6 747 82.2
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1249.2 746 82.8
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1246.5 750 82.8
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1245.3 743 82.9
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1245.3 662 94.0
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1245.0 745 82.0
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1244.2 741 82.9
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1243.0 741 82.6
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1242.6 742 82.7
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1242.6 747 81.9
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1242.3 748 82.5
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1241.1 741 83.1
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1240.3 739 83.6
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1239.9 799 78.3
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1239.2 745 82.1
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1238.8 744 81.9
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1237.6 745 81.9
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1237.2 742 82.2
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1236.9 746 82.2
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1236.1 743 82.5
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1235.7 748 81.8
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1232.2 747 83.4
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1230.3 742 81.8
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1229.2 747 82.2
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1228.8 715 84.3
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1228.8 743 82.5
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1228.8 745 81.1
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1225.7 738 81.8
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1225.7 740 81.5
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1224.2 743 80.3
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1223.8 746 80.8
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1222.6 748 80.7
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1221.1 758 80.6
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1218.8 737 81.1
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1218.0 758 80.2
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1217.6 750 80.5
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1214.5 750 80.5
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1213.7 745 81.3
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1213.0 747 80.6
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1211.8 692 84.7
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1208.7 745 79.9
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1208.0 745 79.9
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1206.4 745 79.7
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1206.4 741 80.8
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1206.0 745 79.7
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1205.3 743 79.9
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1205.3 744 79.3
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1204.1 746 78.7
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1203.3 843 73.0
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1203.0 745 79.5
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1202.6 745 80.5
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1201.8 745 79.5
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1201.8 745 79.5
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1200.7 722 82.0
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1199.9 744 79.2
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1198.3 744 79.0
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1195.6 744 79.2
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1195.3 750 78.8
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1192.9 744 78.4
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1179.1 734 78.6
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1178.7 656 87.5
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1175.6 777 75.4
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1171.4 746 78.8
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1163.3 737 77.7
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1159.8 749 77.8
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1147.5 747 76.8
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1133.6 656 83.1
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1133.6 745 76.9
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1131.3 656 82.9
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1127.9 741 75.3
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1114.4 658 83.6
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1102.4 729 75.2
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1100.1 737 73.9
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 0.0e+00 1096.3 1057 56.9
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 4.0e-307 1057.7 622 83.9
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 6.7e-307 1057.0 747 73.5
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.4e-280 968.8 676 69.7
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.4e-280 968.8 676 69.7
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 3.2e-280 968.4 677 69.3
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 5.4e-280 967.6 679 66.9
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.2e-279 966.5 676 69.5
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.9e-278 961.4 674 69.0
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 8.6e-278 960.3 676 69.2
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 1.3e-257 893.3 593 74.9
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 6.6e-254 880.9 593 74.4
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 2.2e-249 865.9 678 61.4
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 3.2e-232 808.9 679 59.4
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 2.5e-224 782.7 692 57.8
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 4.2e-216 755.4 677 58.5
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 6.1e-207 724.9 675 60.1
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 3.6e-199 699.1 676 53.1
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 1.7e-172 610.5 755 44.0
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 3.5e-162 576.2 361 76.2
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 5.0e-161 572.4 321 90.0
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 4.9e-156 555.8 305 86.6
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 3.4e-141 506.5 298 86.6
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 1.1e-131 474.9 301 79.4
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 1.6e-130 471.1 305 75.4
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 3.3e-120 436.8 292 72.3
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 4.5e-109 399.8 237 82.3
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 2.7e-98 364.0 241 75.1
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 4.3e-96 356.7 296 64.9
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 5.3e-94 349.7 295 62.7
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 7.7e-93 345.9 219 78.1
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 2.0e-88 331.3 224 76.3
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 5.5e-75 286.6 172 78.5
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 2.2e-68 264.6 368 40.2
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 3.2e-67 260.8 393 45.3
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 2.7e-66 257.7 126 96.0
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.4e-62 245.4 144 81.9
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 1.9e-59 235.0 260 52.7
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 3.3e-59 234.2 114 95.6
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 8.0e-50 203.0 136 77.2
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 9.2e-46 189.5 146 67.8
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 8.1e-42 176.4 144 64.6
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 2.4e-38 164.9 102 69.6
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 7.1e-38 163.3 122 69.7
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 9.5e-35 152.9 91 79.1
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 4.0e-33 147.5 141 51.8
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 4.9e-31 140.6 115 67.8
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 4.1e-30 137.5 83 80.7
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 1.9e-27 128.6 105 61.0
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 7.3e-27 126.7 133 54.1
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 4.7e-26 124.0 61 93.4
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.7e-23 115.5 220 30.9
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 2.9e-23 114.8 99 61.6
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 7.1e-22 110.2 136 53.7
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 1.7e-15 89.0 50 80.0
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 7.1e-14 83.6 56 73.2
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.1e-11 76.3 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 3.3e-11 74.7 42 85.7
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 2.1e-10 72.0 38 89.5


User provided reference genes

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