Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g006190 Solanum pennellii HOM05D006674 ORTHO05D007954 7.3e-256 887.1 580 100.0
Solyc11g011390.3 Solanum lycopersicum HOM05D006674 ORTHO05D007954 1.1e-224 783.5 580 92.6
Nitab4.5_0001650g0150 Nicotiana tabacum HOM05D006674 ORTHO05D007954 3.6e-162 575.9 593 66.1
Nitab4.5_0009806g0010 Nicotiana tabacum HOM05D006674 ORTHO05D007954 5.7e-160 568.5 587 66.1
PGSC0003DMG400013236 Solanum tuberosum HOM05D006674 ORTHO05D007954 1.1e-139 501.1 467 74.3
Dinv28183 Davidia involucrata HOM05D006674 ORTHO05D007954 2.8e-122 443.4 595 59.3
CAN.G222.57 Capsicum annuum HOM05D006674 ORTHO05D007954 9.9e-112 408.3 275 82.5
Atru.chr1.1984 Acer truncatum HOM05D006674 ORTHO05D007954 4.9e-111 406.0 593 59.0
CSS0023224 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 3.9e-108 396.4 594 57.1
Thecc.04G053800 Theobroma cacao HOM05D006674 ORTHO05D007954 2.1e-106 390.6 598 58.4
Cc07_g13280 Coffea canephora HOM05D006674 ORTHO05D007954 2.8e-106 390.2 590 56.6
MD17G1268600 Malus domestica HOM05D006674 ORTHO05D007954 2.6e-104 383.6 592 51.7
Duzib133G1445 Durio zibethinus HOM05D006674 ORTHO05D007954 2.4e-102 377.1 598 56.5
Nn4g24371 Nelumbo nucifera HOM05D006674 ORTHO05D007954 2.3e-100 370.5 596 48.0
GSVIVG01030703001 Vitis vinifera HOM05D006674 ORTHO05D007954 9.6e-99 365.2 588 55.3
Manes.01G119600 Manihot esculenta HOM05D006674 ORTHO05D007954 3.4e-96 356.7 584 56.3
TWI77G1007 Tripterygium wilfordii HOM05D006674 ORTHO05D007954 1.7e-95 354.4 594 48.8
Migut.H02229 Erythranthe guttata HOM05D006674 ORTHO05D007954 1.1e-94 351.7 590 54.1
RcHm_v2.0_Chr3g0491391 Rosa chinensis HOM05D006674 ORTHO05D007954 1.1e-94 351.7 533 53.5
Sc11g0004590 Simmondsia chinensis HOM05D006674 ORTHO05D007954 1.2e-93 348.2 588 46.6
Eucgr.F02873 Eucalyptus grandis HOM05D006674 ORTHO05D007954 2.1e-93 347.4 589 48.2
Actinidia28801 Actinidia chinensis HOM05D006674 ORTHO05D007954 4.6e-93 346.3 600 47.0
CsaV3_3G017830 Cucumis sativus L. HOM05D006674 ORTHO05D007954 4.6e-93 346.3 601 51.4
Potri.004G085200 Populus trichocarpa HOM05D006674 ORTHO05D007954 6.7e-92 342.4 587 54.7
FvH4_1g30190 Fragaria vesca HOM05D006674 ORTHO05D007954 8.1e-90 335.5 550 50.4
Gohir.A07G073700 Gossypium hirsutum HOM05D006674 ORTHO05D007954 1.1e-89 335.1 600 53.0
vmacro18526 Vaccinium macrocarpon HOM05D006674 ORTHO05D007954 5.8e-88 329.3 594 51.7
Lj6g0000042 Lotus japonicus HOM05D006674 ORTHO05D007954 1.3e-87 328.2 552 49.6
BcaB06g27104 Brassica carinata HOM05D006674 ORTHO05D007954 1.4e-86 324.7 592 45.6
Prupe.3G166300 Prunus persica HOM05D006674 ORTHO05D007954 5.5e-86 322.8 425 55.1
Aqoxy5G02269 Aquilegia oxysepala HOM05D006674 ORTHO05D007954 2.3e-84 317.4 594 53.2
THA.LOC104805245 Tarenaya hassleriana HOM05D006674 ORTHO05D007954 3.0e-84 317.0 551 53.9
Sed0023155 Sechium edule HOM05D006674 ORTHO05D007954 3.9e-84 316.6 587 50.4
Glyma.11G215400 Glycine max HOM05D006674 ORTHO05D007954 8.7e-84 315.5 554 48.9
Carub.0007s3275 Capsella rubella HOM05D006674 ORTHO05D007954 1.1e-83 315.1 524 57.6
Thhalv10027712m.g Eutrema salsugineum HOM05D006674 ORTHO05D007954 1.1e-83 315.1 551 47.7
BcaC02g09589 Brassica carinata HOM05D006674 ORTHO05D007954 1.5e-83 314.7 529 48.8
A04p10750 Brassica napus HOM05D006674 ORTHO05D007954 7.4e-83 312.4 540 54.8
BolC4t26017H Brassica oleracea HOM05D006674 ORTHO05D007954 9.6e-83 312.0 540 55.0
Haze_14280 Corylus avellana HOM05D006674 ORTHO05D007954 2.1e-82 310.8 665 43.6
Aa31LG9G17490 Aethionema arabicum HOM05D006674 ORTHO05D007954 3.7e-82 310.1 589 44.1
TPR.G24904 Trifolium pratense HOM05D006674 ORTHO05D007954 3.7e-82 310.1 559 48.1
Sp7g04510 Schrenkiella parvula HOM05D006674 ORTHO05D007954 4.8e-82 309.7 592 45.4
AL7G46330 Arabidopsis lyrata HOM05D006674 ORTHO05D007954 6.2e-82 309.3 528 55.5
Sabra04G0056300 Salix brachista HOM05D006674 ORTHO05D007954 8.2e-82 308.9 588 52.7
Glyma.18G041200 Glycine max HOM05D006674 ORTHO05D007954 1.4e-81 308.1 554 48.2
HanXRQChr09g0259811 Helianthus annuus HOM05D006674 ORTHO05D007954 1.4e-81 308.1 508 56.5
BraA04t16739Z Brassica rapa HOM05D006674 ORTHO05D007954 4.1e-81 306.6 540 54.4
Medtr3g065220 Medicago truncatula HOM05D006674 ORTHO05D007954 4.1e-81 306.6 554 48.4
Phvul.001G229300 Phaseolus vulgaris HOM05D006674 ORTHO05D007954 6.9e-81 305.8 497 51.7
C04p44470 Brassica napus HOM05D006674 ORTHO05D007954 1.2e-80 305.1 541 54.7
Gorai.001G082800 Gossypium raimondii HOM05D006674 ORTHO05D007954 4.5e-80 303.1 600 52.7
CiPaw.03G073400 Carya illinoinensis HOM05D006674 ORTHO05D007954 7.6e-80 302.4 520 54.0
Psat5g120320 Pisum sativum HOM05D006674 ORTHO05D007954 8.4e-79 298.9 554 47.5
Ciclev10011395m.g Citrus clementina HOM05D006674 ORTHO05D007954 1.1e-78 298.5 595 53.8
Peaxi162Scf00562g00218 Petunia axillaris HOM05D006674 ORTHO05D007954 1.1e-78 298.5 377 62.1
ECA236G3280 Erigeron canadensis HOM05D006674 ORTHO05D007954 2.5e-78 297.4 561 44.0
Lalb_Chr15g0084971 Lupinus albus HOM05D006674 ORTHO05D007954 4.2e-78 296.6 519 46.2
Gohir.D07G078400 Gossypium hirsutum HOM05D006674 ORTHO05D007954 5.5e-78 296.2 600 52.0
arahy.Tifrunner.gnm1.ann1.M54V7M Arachis hypogaea HOM05D006674 ORTHO05D007954 3.5e-77 293.5 537 48.4
Lsat_1_v5_gn_1_78040 Lactuca sativa HOM05D006674 ORTHO05D007954 6.1e-77 292.7 501 48.3
MELO3C031718.2 Cucumis melo HOM05D006674 ORTHO05D007954 1.3e-74 285.0 492 53.3
EL10Ac2g03314 Beta vulgaris HOM05D006674 ORTHO05D007954 1.9e-70 271.2 544 43.8
FAN26G0259 Fragaria x ananassa HOM05D006674 ORTHO05D007954 2.1e-69 267.7 562 43.1
VMungo1383G3322 Vigna mungo HOM05D006674 ORTHO05D007954 1.1e-65 255.4 604 34.1
Lj4C259T11 Lonicera japonica HOM05D006674 ORTHO05D007954 9.1e-65 252.3 285 52.3
SGA_v2.0_scaffold108G30962 Striga asiatica HOM05D006674 ORTHO05D007954 2.9e-63 247.3 587 41.6
COL.COLO4_13419 Corchorus olitorius HOM05D006674 ORTHO05D007954 3.8e-63 246.9 526 45.8
Rhsim08G0019400 Rhododendron simsii HOM05D006674 ORTHO05D007954 1.4e-62 245.0 410 54.6
arahy.Tifrunner.gnm1.ann1.V27PH4 Arachis hypogaea HOM05D006674 ORTHO05D007954 2.7e-61 240.7 536 45.7
DCAR_016695 Daucus carota HOM05D006674 ORTHO05D007954 3.0e-60 237.3 354 59.6
ClCG05G010650 Citrullus lanatus HOM05D006674 ORTHO05D007954 9.7e-59 232.3 282 49.3
CAN.G691.5 Capsicum annuum HOM05D006674 ORTHO05D007954 1.6e-56 224.9 147 84.4
Ca_17090_v3 Cicer arietinum L. HOM05D006674 ORTHO05D007954 3.5e-56 223.8 248 50.8
CARHR215300 Cardamine hirsuta HOM05D006674 ORTHO05D007954 5.9e-56 223.0 285 45.6
unitig_27.g24984 Utricularia gibba HOM05D006674 ORTHO05D007954 3.8e-55 220.3 530 40.8
CDE06G1904 Ceratophyllum demersum HOM05D006674 ORTHO05D007954 5.0e-55 219.9 524 42.7
PGR004G1202 Punica granatum HOM05D006674 ORTHO05D007954 5.0e-55 219.9 531 31.8
AUR62042219 Chenopodium quinoa HOM05D006674 ORTHO05D007954 2.1e-53 214.5 515 32.8
CAN.G222.56 Capsicum annuum HOM05D006674 ORTHO05D007954 4.0e-52 210.3 211 58.3
ATR0753G123 Amborella trichopoda HOM05D006674 ORTHO05D007954 7.5e-51 206.1 263 47.5
AT5G37590 Arabidopsis thaliana HOM05D006674 ORTHO05D007954 9.7e-51 205.7 560 48.2
CAN.G222.66 Capsicum annuum HOM05D006674 ORTHO05D007954 8.2e-50 202.6 334 46.1
QL02p059277 Quercus lobata HOM05D006674 ORTHO05D007954 7.7e-40 169.5 218 45.4
ClCG05G010660 Citrullus lanatus HOM05D006674 ORTHO05D007954 2.1e-37 161.4 216 44.9
PSO478G0741 Papaver somniferum HOM05D006674 ORTHO05D007954 9.2e-33 146.0 365 53.7
PSO017G4728 Papaver somniferum HOM05D006674 ORTHO05D007954 1.6e-32 145.2 302 59.6
CSS0022976 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 1.0e-28 132.5 134 55.2
Os04g0278200 Oryza sativa ssp. japonica HOM05D006674 ORTHO05D007954 1.2e-27 129.0 242 57.0
ATR0753G105 Amborella trichopoda HOM05D006674 ORTHO05D007954 8.3e-26 122.9 155 45.8
Peaxi162Scf00562g00214 Petunia axillaris HOM05D006674 ORTHO05D007954 1.1e-25 122.5 87 73.6
Cpa.g.sc340.5 Carica papaya HOM05D006674 ORTHO05D007954 7.0e-25 119.8 185 42.7
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 1.1e-22 112.5 454 25.6
HPP92_002281 Vanilla planifolia HOM05D006674 ORTHO05D007954 2.5e-22 111.3 388 46.9
Nitab4.5_0004239g0020 Nicotiana tabacum HOM05D006674 ORTHO05D007954 1.2e-21 109.0 68 83.8
Nitab4.5_0009075g0020 Nicotiana tabacum HOM05D006674 ORTHO05D007954 1.8e-20 105.1 66 80.3
SalBow1G3838 Salvia bowleyana HOM05D006674 ORTHO05D007954 4.0e-20 104.0 180 40.6
Zm00001eb221050 Zea mays HOM05D006674 ORTHO05D007954 4.0e-20 104.0 150 44.7
FAN26G0614 Fragaria x ananassa HOM05D006674 ORTHO05D007954 2.0e-19 101.7 176 40.3
Mapoly0177s0018 Marchantia polymorpha HOM05D006674 ORTHO05D007954 5.4e-17 93.6 154 35.7
Pp3c16_20720 Physcomitrium patens HOM05D006674 ORTHO05D007954 5.4e-17 93.6 152 36.2
Hma1.2p1_1214F.1_g267580 Hydrangea macrophylla HOM05D006674 ORTHO05D007954 7.0e-17 93.2 201 36.8
Zm00001eb221070 Zea mays HOM05D006674 ORTHO05D007954 5.6e-14 83.6 213 32.9
arahy.Tifrunner.gnm1.ann1.EIPD4W Arachis hypogaea HOM05D006674 ORTHO05D007954 7.3e-14 83.2 99 52.5
CBR_g12189 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-12 78.6 103 40.8
QL02p059314 Quercus lobata HOM05D006674 ORTHO05D007954 2.0e-11 75.1 168 33.9
arahy.Tifrunner.gnm1.ann1.UE2S4S Arachis hypogaea HOM05D006674 ORTHO05D007954 8.3e-10 69.7 44 75.0
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 1.4e-09 68.9 427 30.7
Hund13087 Selenicereus undatus HOM05D006674 ORTHO05D007954 7.1e-09 66.6 133 34.6
CSS0039398 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 6.0e-08 63.5 48 62.5
Oeu058058.1 Olea europaea HOM05D013212 ORTHO05D007954 1.0e-07 62.8 93 41.9
FAN19G0964 Fragaria x ananassa HOM05D000564 ORTHO05D004145 1.3e-07 62.4 59 50.8
MCO08G049 Micromonas commoda HOM05D006674 ORTHO05D007954 1.7e-07 62.0 102 36.3
arahy.Tifrunner.gnm1.ann1.MX1HDN Arachis hypogaea HOM05D006674 ORTHO05D007954 3.3e-06 57.8 46 58.7
arahy.Tifrunner.gnm1.ann1.PS0MXP Arachis hypogaea HOM05D006674 ORTHO05D007954 3.3e-06 57.8 46 58.7
Glyma.08G281500 Glycine max HOM05D006674 ORTHO05D007954 5.6e-06 57.0 48 52.1
SEGI_15610 Sequoiadendron giganteum HOM05D006674 ORTHO05D007954 9.5e-06 56.2 48 56.2


User provided reference genes

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