Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 0.0e+00 1894.8 1039 100.0
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 0.0e+00 1866.7 1039 98.0
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 0.0e+00 1716.8 1006 89.7
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 0.0e+00 1620.1 1041 82.8
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 0.0e+00 1584.7 1039 80.7
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 0.0e+00 1342.4 931 77.7
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 0.0e+00 1302.3 1010 66.4
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 1288.5 1014 66.8
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1275.0 1003 66.4
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1263.4 1010 65.3
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 0.0e+00 1242.3 1035 64.3
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1236.5 1007 64.3
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 0.0e+00 1234.9 995 64.7
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 0.0e+00 1228.8 1010 65.4
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 0.0e+00 1213.4 1036 64.8
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 0.0e+00 1211.1 1001 62.4
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 0.0e+00 1210.7 1014 65.1
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 0.0e+00 1208.4 1008 63.2
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 0.0e+00 1206.4 944 67.3
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1201.4 1032 62.1
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1198.7 1003 63.5
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 0.0e+00 1195.3 1014 63.6
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 0.0e+00 1194.9 1013 63.3
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 0.0e+00 1194.5 1006 62.4
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1192.6 1010 62.2
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 0.0e+00 1192.2 1005 63.1
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 0.0e+00 1191.0 1010 62.2
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1190.6 1001 63.3
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 0.0e+00 1187.6 1112 58.0
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 0.0e+00 1184.9 1009 61.7
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 0.0e+00 1181.8 990 63.8
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 0.0e+00 1176.0 1039 60.7
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 0.0e+00 1175.6 1050 60.4
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 0.0e+00 1174.5 988 63.0
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 0.0e+00 1165.2 1015 61.9
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 0.0e+00 1164.1 1010 62.9
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 0.0e+00 1162.9 1042 60.6
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1160.2 1009 60.0
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1156.7 1008 59.8
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 0.0e+00 1156.4 667 93.9
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 0.0e+00 1155.2 1003 62.1
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 0.0e+00 1151.0 930 64.0
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1150.6 1006 61.3
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1147.9 1013 61.4
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 0.0e+00 1147.5 998 60.4
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1146.7 1010 61.6
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1143.6 1026 60.1
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1143.3 1013 60.4
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1142.5 1001 61.8
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1140.2 1041 60.9
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 0.0e+00 1135.2 980 60.4
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1130.9 1007 60.4
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 0.0e+00 1125.2 1010 57.9
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 0.0e+00 1123.6 1000 60.7
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1120.9 1021 58.8
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1120.5 1003 60.1
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 0.0e+00 1114.4 1004 60.0
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 0.0e+00 1111.7 1007 59.4
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1108.2 1007 59.4
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 0.0e+00 1105.5 1016 59.0
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 0.0e+00 1104.7 1011 58.6
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 0.0e+00 1101.3 1008 58.0
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 0.0e+00 1098.6 1022 59.7
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1098.2 1010 58.5
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 0.0e+00 1095.9 998 58.4
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 0.0e+00 1085.5 1012 58.0
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 0.0e+00 1085.5 1018 58.6
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 0.0e+00 1080.5 1013 58.5
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 0.0e+00 1080.5 1003 58.0
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 3.5e-309 1065.1 1013 57.2
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 1.2e-306 1056.6 1016 56.8
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 1.6e-306 1056.2 1001 57.3
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 1.6e-306 1056.2 1001 57.3
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 8.0e-306 1053.9 1016 55.7
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 1.0e-305 1053.5 1010 56.0
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 2.3e-305 1052.4 1013 56.2
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 1.5e-304 1049.7 1006 55.7
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 1.3e-303 1046.6 1021 56.4
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 1.7e-303 1046.2 1012 56.4
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 3.7e-303 1045.0 1012 56.4
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 3.7e-303 1045.0 1011 57.0
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 3.2e-302 1042.0 1007 56.8
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 2.0e-301 1039.3 1037 55.3
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 2.8e-298 1028.9 1028 55.6
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 5.1e-292 1008.1 1000 53.7
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 2.0e-288 996.1 1012 54.3
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 1.3e-287 993.4 1129 51.2
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 1.6e-274 949.9 836 57.9
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 3.8e-271 938.7 747 64.0
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 2.1e-269 932.9 747 63.6
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 6.0e-269 931.4 740 63.4
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 1.6e-266 923.3 1004 54.5
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 1.5e-264 916.8 749 62.1
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 3.8e-263 912.1 773 61.2
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 2.8e-258 896.0 746 62.1
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 7.9e-237 824.7 1009 48.7
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 6.3e-234 815.1 630 66.3
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 1.5e-227 793.9 995 46.5
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 1.6e-224 783.9 556 70.0
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 8.0e-197 691.8 1004 41.7
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 3.4e-195 686.4 559 61.4
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 1.6e-192 677.6 603 58.0
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 3.9e-175 619.8 677 50.5
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 8.9e-172 608.6 899 41.3
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 1.0e-167 595.1 918 38.3
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 2.3e-159 567.4 959 39.3
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 3.2e-153 547.0 428 65.4
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 3.7e-141 506.9 634 48.9
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 1.2e-94 352.4 767 36.9
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 2.8e-93 347.8 296 67.6
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 2.7e-91 341.3 318 53.8
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 2.9e-90 337.8 248 67.7
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 8.0e-88 329.7 351 53.0
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 2.3e-82 311.6 234 70.1
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 8.3e-77 293.1 389 47.8
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 1.9e-73 282.0 272 52.9
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 5.2e-71 273.9 418 38.3
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 8.3e-69 266.5 942 26.5
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 2.3e-66 258.5 213 59.2
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 3.1e-63 248.1 234 57.7
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 1.9e-60 238.8 831 28.3
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 1.6e-59 235.7 195 57.4
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 1.8e-47 195.7 252 52.0
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 6.2e-40 170.6 133 63.9
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 5.1e-34 151.0 105 70.5
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 8.7e-34 150.2 250 47.2
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 6.5e-21 107.5 64 76.6
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 9.3e-20 103.6 85 60.0
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 2.3e-18 99.0 68 72.1
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 1.9e-17 95.9 68 69.1
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 6.9e-15 87.4 67 59.7
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 9.0e-15 87.0 52 78.8
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 4.5e-14 84.7 683 20.5
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 1.0e-13 83.6 77 57.1
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 7.4e-09 67.4 46 71.7
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 7.4e-09 67.4 57 50.9
CAN.G691.3 Capsicum annuum HOM05D005365 ORTHO05D115466 1.1e-07 63.5 66 63.6
Thhalv10028211m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.5e-06 59.7 59 52.5
SEGI_36380 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 7.7e-06 57.4 47 53.2


User provided reference genes

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