Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 0.0e+00 1273.5 644 100.0
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 0.0e+00 1239.2 646 97.2
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 0.0e+00 1186.0 648 93.5
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 3.7e-309 1064.3 652 85.1
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 9.4e-305 1049.7 694 80.0
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 5.9e-275 950.7 653 77.3
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 2.5e-241 839.0 651 68.2
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 6.9e-239 830.9 655 66.9
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 1.5e-238 829.7 650 66.9
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 2.2e-237 825.9 535 81.7
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 8.4e-237 823.9 654 65.3
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 1.1e-236 823.5 650 66.9
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.1e-233 813.5 656 66.3
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 1.6e-232 809.7 647 65.8
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 6.2e-232 807.7 675 64.3
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 1.4e-231 806.6 663 66.5
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 1.8e-231 806.2 675 64.6
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 1.2e-230 803.5 659 65.4
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 3.4e-230 802.0 657 64.8
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 5.8e-230 801.2 657 66.1
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 2.1e-227 792.7 653 65.5
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 1.0e-226 790.4 657 63.9
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 8.7e-226 787.3 656 65.7
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 2.5e-225 785.8 635 66.1
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 5.6e-225 784.6 653 65.8
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 5.6e-225 784.6 658 64.3
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 2.8e-224 782.3 649 65.2
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 1.8e-223 779.6 641 64.7
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 2.4e-223 779.2 654 62.2
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 9.0e-223 777.3 666 63.1
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 4.5e-222 775.0 660 63.5
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 9.9e-222 773.9 641 63.3
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 1.7e-221 773.1 653 64.5
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 2.9e-221 772.3 643 63.8
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 3.2e-220 768.8 643 63.5
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 9.3e-220 767.3 656 64.5
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 1.6e-219 766.5 660 62.3
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 7.9e-219 764.2 636 62.6
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 2.3e-218 762.7 651 62.8
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 2.3e-218 762.7 670 60.9
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 5.1e-218 761.5 655 61.8
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.1e-217 760.4 654 63.9
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 3.3e-217 758.8 637 64.1
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 5.6e-217 758.1 658 62.9
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 5.6e-217 758.1 658 62.9
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 1.4e-215 753.4 653 61.3
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 2.4e-215 752.7 650 62.3
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 4.0e-215 751.9 656 61.7
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 4.0e-215 751.9 648 63.6
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 2.9e-213 745.7 670 60.9
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 2.9e-213 745.7 637 62.5
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 6.5e-213 744.6 657 61.0
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 2.5e-212 742.7 632 63.0
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 5.5e-212 741.5 631 62.6
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 2.7e-211 739.2 659 60.2
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 3.5e-211 738.8 657 61.2
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.0e-210 737.3 618 64.7
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 4.3e-209 731.9 657 59.8
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 1.3e-208 730.3 660 59.8
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 1.1e-207 727.2 646 59.9
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 5.3e-207 724.9 669 59.3
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 7.2e-204 714.5 647 59.7
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 1.6e-203 713.4 647 59.0
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 2.1e-203 713.0 645 61.1
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 7.9e-203 711.1 656 59.1
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 2.3e-202 709.5 599 62.6
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 6.3e-200 701.4 674 58.5
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 8.2e-200 701.0 643 59.3
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 1.8e-199 699.9 660 59.4
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 5.3e-199 698.4 660 59.4
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 6.9e-199 698.0 662 59.5
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 1.0e-197 694.1 646 58.8
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.3e-197 693.7 643 58.8
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 1.7e-197 693.3 646 58.8
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.4e-196 690.3 643 58.8
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 1.6e-195 686.8 644 58.4
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.6e-195 686.8 645 57.8
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 1.0e-194 684.1 682 55.4
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 6.7e-194 681.4 659 58.3
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 1.5e-193 680.2 653 56.2
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 4.8e-192 675.2 585 62.9
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 4.1e-191 672.2 569 63.6
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 2.1e-187 659.8 646 54.8
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 1.4e-186 657.1 651 55.9
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 2.3e-186 656.4 637 57.1
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 3.1e-183 646.0 531 64.6
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 1.6e-182 643.7 488 68.2
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 1.4e-178 630.6 538 61.3
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 1.1e-172 610.9 502 64.1
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 3.6e-171 605.9 688 51.0
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 2.3e-170 603.2 653 51.3
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 5.2e-170 602.1 649 52.1
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 5.2e-170 602.1 490 64.7
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 5.9e-158 562.0 696 46.8
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.1e-156 557.8 596 54.0
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 4.9e-152 542.3 542 55.5
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.6e-142 510.8 485 58.1
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 5.1e-133 479.2 512 54.3
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 7.3e-132 475.3 635 44.4
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 2.9e-128 463.4 444 59.2
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 2.9e-120 436.8 443 60.9
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 2.8e-115 420.2 748 36.6
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 3.9e-109 399.8 681 38.0
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.5e-103 380.6 384 60.4
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 9.6e-100 368.6 292 70.9
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 3.1e-98 363.6 283 65.4
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.1e-95 355.1 338 59.8
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 9.3e-95 352.1 293 68.9
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 9.3e-95 352.1 581 40.3
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 1.8e-93 347.8 344 54.7
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 1.3e-91 341.7 637 36.4
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 5.7e-84 316.2 206 80.1
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 2.8e-83 313.9 288 62.5
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 7.9e-78 295.8 543 36.6
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.6e-70 271.6 326 48.5
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 3.0e-61 240.7 175 70.3
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 3.0e-61 240.7 380 40.8
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 3.1e-58 230.7 195 64.6
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 1.8e-53 214.9 386 43.0
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.1e-46 191.4 149 61.7
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.2e-44 185.7 155 63.2
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 8.6e-40 169.5 327 33.3
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 1.1e-39 169.1 677 29.2
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 1.6e-33 148.7 106 64.2
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 3.1e-29 134.4 179 45.3
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 6.4e-19 100.1 126 50.0
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 6.0e-17 93.6 74 62.2
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 3.0e-16 91.3 61 75.4
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 8.6e-16 89.7 93 47.3
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 9.6e-15 86.3 66 62.1
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 1.2e-14 85.9 165 39.4
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 4.7e-14 84.0 112 46.4
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 2.4e-13 81.6 93 50.5
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 4.4e-12 77.4 52 76.9
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 7.6e-12 76.6 112 43.8
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.3e-11 75.9 56 66.1
Cre03.g145667 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 2.1e-06 58.5 110 33.6


User provided reference genes

Program Settings