Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g005330 Solanum pennellii HOM05D021516 ORTHO05D030678 2.8e-201 705.7 533 100.0
Sopen11g005320 Solanum pennellii HOM05D021516 ORTHO05D030678 2.9e-142 509.6 438 98.9
PGSC0003DMG400016139 Solanum tuberosum HOM05D021516 ORTHO05D030678 1.7e-105 387.5 360 61.4
Solyc11g010540.1 Solanum lycopersicum HOM05D000160 ORTHO05D001344 8.1e-60 235.7 337 47.8
PGSC0003DMG400041822 Solanum tuberosum HOM05D021516 ORTHO05D030678 1.1e-59 235.3 340 47.4
Sopen11g005340 Solanum pennellii HOM05D000160 ORTHO05D001344 6.8e-59 232.6 343 46.9
Nitab4.5_0004153g0010 Nicotiana tabacum HOM05D000160 ORTHO05D001344 6.0e-31 139.8 340 36.5
Peaxi162Scf00778g00006 Petunia axillaris HOM05D000160 ORTHO05D001344 1.0e-30 139.0 368 33.2
CAN.G1068.4 Capsicum annuum HOM05D021516 ORTHO05D028460 2.2e-25 121.3 360 31.4
Migut.K00791 Erythranthe guttata HOM05D000160 ORTHO05D001344 3.7e-20 104.0 125 42.4
Nitab4.5_0001468g0130 Nicotiana tabacum HOM05D000160 ORTHO05D001344 1.8e-19 101.7 100 54.0
SGA_v2.0_scaffold45G17239 Striga asiatica HOM05D000160 ORTHO05D001344 7.6e-18 96.3 121 43.0
unitig_0.g1720 Utricularia gibba HOM05D000160 ORTHO05D001344 2.9e-17 94.4 122 42.6
Actinidia28827 Actinidia chinensis HOM05D000160 ORTHO05D001344 3.8e-17 94.0 152 37.5
CAN.G1843.2 Capsicum annuum HOM05D000160 ORTHO05D028460 5.0e-17 93.6 141 37.6
CAN.G1843.4 Capsicum annuum HOM05D000160 ORTHO05D028460 8.4e-17 92.8 138 37.7
CAN.G371.57 Capsicum annuum HOM05D021516 ORTHO05D028460 1.6e-15 88.6 138 37.0
ECA238G1384 Erigeron canadensis HOM05D000160 ORTHO05D001344 7.9e-15 86.3 131 39.7
SalBow5G0873 Salvia bowleyana HOM05D000160 ORTHO05D001344 7.9e-15 86.3 121 40.5
Lj2P535T38 Lonicera japonica HOM05D000160 ORTHO05D001344 1.3e-14 85.5 150 32.0
Rhsim08G0016200 Rhododendron simsii HOM05D000160 ORTHO05D001344 1.8e-14 85.1 127 42.5
CAN.G1724.3 Capsicum annuum HOM05D006593 ORTHO05D008512 1.5e-13 82.0 134 35.1
Dinv13610 Davidia involucrata HOM05D000160 ORTHO05D001344 4.8e-12 77.0 345 27.0
Ciclev10028303m.g Citrus clementina HOM05D000160 ORTHO05D001344 2.4e-11 74.7 145 32.4
Nitab4.5_0000131g0330 Nicotiana tabacum HOM05D000160 ORTHO05D001344 4.1e-11 73.9 129 35.7
Nitab4.5_0003709g0050 Nicotiana tabacum HOM05D000160 ORTHO05D001344 4.1e-11 73.9 129 35.7
PGSC0003DMG400009345 Solanum tuberosum HOM05D000160 ORTHO05D001344 5.3e-11 73.6 129 34.9
Lj5C231T2 Lonicera japonica HOM05D000160 ORTHO05D001344 9.0e-11 72.8 134 33.6
Sc18g0007050 Simmondsia chinensis HOM05D000160 ORTHO05D001344 9.0e-11 72.8 129 32.6
Solyc04g076270.1 Solanum lycopersicum HOM05D000160 ORTHO05D001344 9.0e-11 72.8 129 34.9
EL10Ac9g22076 Beta vulgaris HOM05D000160 ORTHO05D001344 1.2e-10 72.4 131 32.8
MSTRG.24427 Avicennia marina HOM05D000160 ORTHO05D001344 2.0e-10 71.6 134 31.3
CAN.G475.34 Capsicum annuum HOM05D000160 ORTHO05D001344 2.6e-10 71.2 129 34.9
THA.LOC104807178 Tarenaya hassleriana HOM05D000160 ORTHO05D014752 2.6e-10 71.2 127 30.7
unitig_578.g16181 Utricularia gibba HOM05D000160 ORTHO05D001344 2.6e-10 71.2 136 34.6
GSVIVG01015639001 Vitis vinifera HOM05D000160 ORTHO05D001344 3.4e-10 70.9 124 35.5
AUR62012890 Chenopodium quinoa HOM05D000160 ORTHO05D001344 4.5e-10 70.5 131 32.8
AUR62027114 Chenopodium quinoa HOM05D000160 ORTHO05D001344 4.5e-10 70.5 131 32.8
Nitab4.5_0005565g0030 Nicotiana tabacum HOM05D000160 ORTHO05D001344 4.5e-10 70.5 134 31.3
Nitab4.5_0008554g0020 Nicotiana tabacum HOM05D000160 ORTHO05D001344 4.5e-10 70.5 134 31.3
MD10G1054200 Malus domestica HOM05D000160 ORTHO05D001344 5.9e-10 70.1 132 31.8
CSS0019768 Camellia sinensis var. sinensis HOM05D000160 ORTHO05D001344 7.7e-10 69.7 137 34.3
DCAR_001858 Daucus carota HOM05D000160 ORTHO05D001344 1.0e-09 69.3 121 38.0
DCAR_001859 Daucus carota HOM05D000160 ORTHO05D001344 1.0e-09 69.3 121 38.0
Peaxi162Scf00299g00082 Petunia axillaris HOM05D000160 ORTHO05D001344 1.0e-09 69.3 134 32.1
Ah.01g023990 Amaranthus hybridus HOM05D000160 ORTHO05D001344 1.3e-09 68.9 131 32.1
Oeu027057.1 Olea europaea HOM05D000331 ORTHO05D002018 1.3e-09 68.9 142 30.3
Oeu027059.2 Olea europaea HOM05D000331 ORTHO05D002018 1.3e-09 68.9 142 30.3
FAN15G2995 Fragaria x ananassa HOM05D000160 ORTHO05D001344 1.7e-09 68.6 121 33.9
Sc14g0003450 Simmondsia chinensis HOM05D000160 ORTHO05D001344 1.7e-09 68.6 128 32.8
SGA_v2.0_scaffold115G32130 Striga asiatica HOM05D000160 ORTHO05D001344 1.7e-09 68.6 384 24.5
PGR042G0012 Punica granatum HOM05D000160 ORTHO05D001344 2.2e-09 68.2 139 31.7
RcHm_v2.0_Chr6g0271111 Rosa chinensis HOM05D000160 ORTHO05D001344 2.2e-09 68.2 131 32.1
SGA_v2.0_scaffold28G11883 Striga asiatica HOM05D000160 ORTHO05D001344 2.2e-09 68.2 135 30.4
Duzib116G0457 Durio zibethinus HOM05D000160 ORTHO05D001344 3.8e-09 67.4 120 35.0
Oeu014191.1 Olea europaea HOM05D000160 ORTHO05D001344 3.8e-09 67.4 155 30.3
SGA_v2.0_scaffold48G17835 Striga asiatica HOM05D000160 ORTHO05D001344 3.8e-09 67.4 135 29.6
Peaxi162Scf00979g00003 Petunia axillaris HOM05D000160 ORTHO05D001344 5.0e-09 67.0 140 34.3
Eucgr.G00982 Eucalyptus grandis HOM05D000160 ORTHO05D001344 6.5e-09 66.6 125 32.0
Gorai.010G035100 Gossypium raimondii HOM05D000160 ORTHO05D001344 6.5e-09 66.6 120 34.2
vmacro04999 Vaccinium macrocarpon HOM05D000160 ORTHO05D001344 6.5e-09 66.6 121 34.7
Aa31LG2G440 Aethionema arabicum HOM05D000160 ORTHO05D014752 8.5e-09 66.2 129 30.2
FAN20G2951 Fragaria x ananassa HOM05D000160 ORTHO05D001344 8.5e-09 66.2 121 32.2
Gohir.A06G032604 Gossypium hirsutum HOM05D000160 ORTHO05D001344 8.5e-09 66.2 120 33.3
PGR042G1171 Punica granatum HOM05D000160 ORTHO05D001344 8.5e-09 66.2 126 34.1
CAN.G523.15 Capsicum annuum HOM05D000160 ORTHO05D001344 1.1e-08 65.9 134 31.3
Potri.007G114800 Populus trichocarpa HOM05D000160 ORTHO05D001344 1.1e-08 65.9 131 33.6
Oeu061174.2 Olea europaea HOM05D000160 ORTHO05D001344 1.4e-08 65.5 128 32.8
SalBow2G3360 Salvia bowleyana HOM05D000160 ORTHO05D001344 1.4e-08 65.5 134 29.9
Cc07_g14200 Coffea canephora HOM05D000160 ORTHO05D001344 1.9e-08 65.1 331 27.8
Migut.N02857 Erythranthe guttata HOM05D000160 ORTHO05D001344 1.9e-08 65.1 134 29.9
arahy.Tifrunner.gnm1.ann1.W3L059 Arachis hypogaea HOM05D000160 ORTHO05D001344 2.5e-08 64.7 125 32.8
Ciclev10001879m.g Citrus clementina HOM05D000160 ORTHO05D001344 2.5e-08 64.7 123 32.5
Potri.005G156100 Populus trichocarpa HOM05D000160 ORTHO05D001344 2.5e-08 64.7 132 32.6
AT2G01710 Arabidopsis thaliana HOM05D000160 ORTHO05D001344 4.2e-08 63.9 170 28.8
Gorai.002G142100 Gossypium raimondii HOM05D000160 ORTHO05D001344 4.2e-08 63.9 120 32.5
Prupe.8G069000 Prunus persica HOM05D000160 ORTHO05D001344 4.2e-08 63.9 132 31.1
Solyc01g105780.4 Solanum lycopersicum HOM05D000160 ORTHO05D001344 4.2e-08 63.9 134 30.6
Sopen01g048240 Solanum pennellii HOM05D000160 ORTHO05D001344 4.2e-08 63.9 134 30.6
PGSC0003DMG400033592 Solanum tuberosum HOM05D000160 ORTHO05D001344 4.2e-08 63.9 134 30.6
AL6G19940 Arabidopsis lyrata HOM05D000160 ORTHO05D001344 5.5e-08 63.5 125 32.0
arahy.Tifrunner.gnm1.ann1.Z4FQG9 Arachis hypogaea HOM05D000160 ORTHO05D001344 5.5e-08 63.5 125 32.0
Sc08g0003900 Simmondsia chinensis HOM05D000160 ORTHO05D001344 5.5e-08 63.5 129 31.8
Sed0003707 Sechium edule HOM05D000160 ORTHO05D001344 7.2e-08 63.2 224 26.8
Atru.chr6.1249 Acer truncatum HOM05D000160 ORTHO05D001344 9.4e-08 62.8 127 32.3
Cc10_g15840 Coffea canephora HOM05D000160 ORTHO05D001344 9.4e-08 62.8 131 30.5
CsaV3_3G047970 Cucumis sativus L. HOM05D000160 ORTHO05D001344 9.4e-08 62.8 123 32.5
Dinv15993 Davidia involucrata HOM05D000160 ORTHO05D001344 9.4e-08 62.8 123 34.1
Gohir.A05G219800 Gossypium hirsutum HOM05D000160 ORTHO05D001344 9.4e-08 62.8 120 32.5
TWI23G0315 Tripterygium wilfordii HOM05D000160 ORTHO05D001344 9.4e-08 62.8 158 28.5
Actinidia24017 Actinidia chinensis HOM05D000160 ORTHO05D001344 1.2e-07 62.4 123 32.5
Carub.0002s0205 Capsella rubella HOM05D000160 ORTHO05D014752 1.2e-07 62.4 125 31.2
ClCG11G014550 Citrullus lanatus HOM05D000160 ORTHO05D001344 1.2e-07 62.4 136 29.4
MELO3C003525.2 Cucumis melo HOM05D000160 ORTHO05D001344 1.2e-07 62.4 123 32.5
Thhalv10005716m.g Eutrema salsugineum HOM05D000160 ORTHO05D001344 1.2e-07 62.4 156 27.6
Hma1.2p1_1093F.1_g256175 Hydrangea macrophylla HOM05D000160 ORTHO05D001344 1.2e-07 62.4 123 32.5
Hma1.2p1_1093F.1_g256180 Hydrangea macrophylla HOM05D000160 ORTHO05D001344 1.2e-07 62.4 123 32.5
QL09p017645 Quercus lobata HOM05D000160 ORTHO05D001344 1.2e-07 62.4 123 33.3
Cfa004343 Carpinus fangiana HOM05D000160 ORTHO05D001344 1.6e-07 62.0 152 30.3
Manes.02G145200 Manihot esculenta HOM05D000160 ORTHO05D001344 1.6e-07 62.0 123 32.5
Sed0011618 Sechium edule HOM05D000160 ORTHO05D001344 1.6e-07 62.0 126 30.2
Atru.chr13.1019 Acer truncatum HOM05D000160 ORTHO05D001344 2.1e-07 61.6 125 31.2
Thhalv10023288m.g Eutrema salsugineum HOM05D000160 ORTHO05D014752 2.1e-07 61.6 128 29.7
Sabra05G0119800 Salix brachista HOM05D000160 ORTHO05D001344 2.1e-07 61.6 132 31.1
Thecc.08G070200 Theobroma cacao HOM05D000160 ORTHO05D001344 2.1e-07 61.6 120 30.8
Ah.01g007450 Amaranthus hybridus HOM05D000160 ORTHO05D001344 2.7e-07 61.2 125 30.4
HanXRQChr15g0495871 Helianthus annuus HOM05D000160 ORTHO05D001344 2.7e-07 61.2 121 33.1
SalBow6G4311 Salvia bowleyana HOM05D000160 ORTHO05D001344 2.7e-07 61.2 97 36.1
TWI14G1130 Tripterygium wilfordii HOM05D000160 ORTHO05D001344 2.7e-07 61.2 161 28.0
Gohir.D01G116600 Gossypium hirsutum HOM05D000160 ORTHO05D001344 3.6e-07 60.8 120 31.7
Gohir.D05G222400 Gossypium hirsutum HOM05D000160 ORTHO05D001344 3.6e-07 60.8 120 32.5
Gorai.009G229800 Gossypium raimondii HOM05D000160 ORTHO05D001344 3.6e-07 60.8 120 32.5
Manes.18G059100 Manihot esculenta HOM05D000160 ORTHO05D001344 3.6e-07 60.8 124 31.5
Potri.002G105500 Populus trichocarpa HOM05D000160 ORTHO05D001344 3.6e-07 60.8 132 32.6
Rhsim06G0072000 Rhododendron simsii HOM05D000160 ORTHO05D001344 3.6e-07 60.8 131 32.1
TAR381G1279 Trochodendron aralioides HOM05D000160 ORTHO05D001344 3.6e-07 60.8 125 33.6
CANSAT01G1653 Cannabis sativa HOM05D000160 ORTHO05D001344 4.6e-07 60.5 116 35.3
VMungo0251G2126 Vigna mungo HOM05D000160 ORTHO05D001344 4.6e-07 60.5 133 33.1
CSS0026553 Camellia sinensis var. sinensis HOM05D000160 ORTHO05D001344 6.1e-07 60.1 123 31.7
DCAR_032426 Daucus carota HOM05D000160 ORTHO05D001344 6.1e-07 60.1 139 30.9
Lj9C348T9 Lonicera japonica HOM05D000160 ORTHO05D001344 6.1e-07 60.1 123 32.5
Rhsim11G0144200 Rhododendron simsii HOM05D000160 ORTHO05D001344 6.1e-07 60.1 123 33.3
Sp2g13160 Schrenkiella parvula HOM05D000160 ORTHO05D001344 6.1e-07 60.1 163 28.2
DCAR_012859 Daucus carota HOM05D000160 ORTHO05D001344 7.9e-07 59.7 123 33.3
AL5G10800 Arabidopsis lyrata HOM05D000160 ORTHO05D001344 1.0e-06 59.3 156 28.2
Cfa013788 Carpinus fangiana HOM05D000160 ORTHO05D001344 1.0e-06 59.3 123 30.9
DCAR_029659 Daucus carota HOM05D000160 ORTHO05D001344 1.0e-06 59.3 118 32.2
Potri.017G044600 Populus trichocarpa HOM05D000160 ORTHO05D001344 1.0e-06 59.3 127 32.3
Lalb_Chr17g0344501 Lupinus albus HOM05D000160 ORTHO05D001344 1.4e-06 58.9 123 31.7
Carub.0005s0065 Capsella rubella HOM05D000160 ORTHO05D001344 1.8e-06 58.5 159 27.0
DCAR_018777 Daucus carota HOM05D000160 ORTHO05D001344 1.8e-06 58.5 126 31.7
BcaB07g30378 Brassica carinata HOM05D000160 ORTHO05D001344 2.3e-06 58.2 160 26.9
Cc00_g28220 Coffea canephora HOM05D000160 ORTHO05D001344 2.3e-06 58.2 149 30.2
Duzib041G0339 Durio zibethinus HOM05D000160 ORTHO05D001344 2.3e-06 58.2 120 31.7
Nn1g05552 Nelumbo nucifera HOM05D000160 ORTHO05D001344 2.3e-06 58.2 123 32.5
Sabra07G0093600 Salix brachista HOM05D000160 ORTHO05D001344 2.3e-06 58.2 107 35.5
Ah.02g123660 Amaranthus hybridus HOM05D000160 ORTHO05D001344 3.0e-06 57.8 139 30.9
Glyma.08G279900 Glycine max HOM05D000160 ORTHO05D001344 3.0e-06 57.8 123 35.8
Gorai.002G012400 Gossypium raimondii HOM05D000160 ORTHO05D001344 3.0e-06 57.8 123 30.9
Rhsim07G0211600 Rhododendron simsii HOM05D000160 ORTHO05D001344 3.0e-06 57.8 126 31.0
SGA_v2.0_scaffold145G36022 Striga asiatica HOM05D000160 ORTHO05D001344 3.0e-06 57.8 136 30.9
unitig_747.g21243 Utricularia gibba HOM05D000160 ORTHO05D001344 3.9e-06 57.4 135 28.1
BcaC03g17069 Brassica carinata HOM05D000160 ORTHO05D001344 5.1e-06 57.0 161 26.7
A02p32270 Brassica napus HOM05D000160 ORTHO05D001344 5.1e-06 57.0 161 26.7
C02p49870 Brassica napus HOM05D000160 ORTHO05D001344 5.1e-06 57.0 161 26.7
BolC2t11066H Brassica oleracea HOM05D000160 ORTHO05D001344 5.1e-06 57.0 161 26.7
BraA02t08244Z Brassica rapa HOM05D000160 ORTHO05D001344 5.1e-06 57.0 161 26.7
Hma1.2p1_0010F.1_g006820 Hydrangea macrophylla HOM05D000160 ORTHO05D001344 5.1e-06 57.0 136 29.4
Lsat_1_v5_gn_2_70720 Lactuca sativa HOM05D000160 ORTHO05D001344 5.1e-06 57.0 304 25.0
Phvul.008G181600 Phaseolus vulgaris HOM05D000160 ORTHO05D001344 6.7e-06 56.6 123 29.3
THA.LOC104804176 Tarenaya hassleriana HOM05D000160 ORTHO05D001344 6.7e-06 56.6 161 29.8
CSS0011151 Camellia sinensis var. sinensis HOM05D000160 ORTHO05D001344 8.8e-06 56.2 122 31.1
CSS0033193 Camellia sinensis var. sinensis HOM05D000160 ORTHO05D001344 8.8e-06 56.2 122 31.1
CARHR048690 Cardamine hirsuta HOM05D000160 ORTHO05D014752 8.8e-06 56.2 128 28.1
Gohir.A02G078800 Gossypium hirsutum HOM05D000160 ORTHO05D001344 8.8e-06 56.2 122 27.9
Gorai.005G096800 Gossypium raimondii HOM05D000160 ORTHO05D001344 8.8e-06 56.2 122 27.9
vmacro21335 Vaccinium macrocarpon HOM05D000160 ORTHO05D001344 8.8e-06 56.2 141 29.8


User provided reference genes

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