Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g005100 Solanum pennellii HOM05D007989 ORTHO05D010087 8.9e-86 320.5 190 100.0
PGSC0003DMG401016146 Solanum tuberosum HOM05D007989 ORTHO05D010087 1.0e-81 307.0 189 92.6
Solyc11g010320.1 Solanum lycopersicum HOM05D007989 ORTHO05D010087 1.1e-78 297.0 189 95.8
CAN.G905.6 Capsicum annuum HOM05D007989 ORTHO05D010087 3.9e-65 251.9 199 73.4
Nitab4.5_0005930g0030 Nicotiana tabacum HOM05D007989 ORTHO05D010087 1.6e-55 219.9 203 62.6
Nitab4.5_0000241g0120 Nicotiana tabacum HOM05D007989 ORTHO05D010087 8.1e-55 217.6 204 63.2
Dinv08871 Davidia involucrata HOM05D007989 ORTHO05D010087 5.3e-30 135.2 207 47.8
CiPaw.04G104100 Carya illinoinensis HOM05D007989 ORTHO05D010087 4.6e-26 122.1 210 45.7
QL06p047951 Quercus lobata HOM05D007989 ORTHO05D010087 7.9e-26 121.3 214 44.4
TWI53G0073 Tripterygium wilfordii HOM05D007989 ORTHO05D010087 3.3e-24 115.9 191 41.4
Haze_24825 Corylus avellana HOM05D007989 ORTHO05D010087 7.4e-24 114.8 203 40.4
Haze_24830 Corylus avellana HOM05D007989 ORTHO05D010087 7.4e-24 114.8 203 40.4
Prupe.6G193900 Prunus persica HOM05D007989 ORTHO05D010087 2.2e-23 113.2 213 36.6
Thecc.01G095100 Theobroma cacao HOM05D007989 ORTHO05D010087 2.2e-23 113.2 208 39.4
CiPaw.03G146300 Carya illinoinensis HOM05D007989 ORTHO05D010087 3.7e-23 112.5 208 40.4
Cfa002588 Carpinus fangiana HOM05D007989 ORTHO05D010087 1.1e-22 110.9 207 40.6
Duzib147G0239 Durio zibethinus HOM05D007989 ORTHO05D010087 3.1e-22 109.4 197 38.1
Cpa.g.sc55.66 Carica papaya HOM05D007989 ORTHO05D010087 4.1e-22 109.0 203 40.4
FAN26G0087 Fragaria x ananassa HOM05D007989 ORTHO05D010087 5.3e-22 108.6 206 37.4
MD01G1036700 Malus domestica HOM05D007989 ORTHO05D010087 9.0e-22 107.8 205 34.6
Atru.chr3.1338 Acer truncatum HOM05D007989 ORTHO05D010087 1.5e-21 107.1 211 40.8
FAN23G0861 Fragaria x ananassa HOM05D007989 ORTHO05D010087 3.4e-21 105.9 206 36.4
MBI06_g03317_MAGBIO Magnolia biondii HOM05D007989 ORTHO05D010087 4.5e-21 105.5 185 39.5
FvH4_1g20210 Fragaria vesca HOM05D007989 ORTHO05D010087 5.9e-21 105.1 206 35.9
FAN19G2348 Fragaria x ananassa HOM05D007989 ORTHO05D010087 7.7e-21 104.8 206 35.9
RcHm_v2.0_Chr2g0112271 Rosa chinensis HOM05D007989 ORTHO05D010087 1.3e-20 104.0 205 36.1
Migut.H02322 Erythranthe guttata HOM05D007989 ORTHO05D010087 2.2e-20 103.2 188 39.9
Gohir.D03G040900 Gossypium hirsutum HOM05D007989 ORTHO05D010087 2.2e-20 103.2 189 37.0
Gohir.A02G130000 Gossypium hirsutum HOM05D007989 ORTHO05D010087 5.0e-20 102.1 189 37.0
EL10Ac6g14814 Beta vulgaris HOM05D007989 ORTHO05D010087 6.5e-20 101.7 167 40.7
Gorai.003G041700 Gossypium raimondii HOM05D007989 ORTHO05D010087 6.5e-20 101.7 189 37.0
COL.COLO4_27300 Corchorus olitorius HOM05D007989 ORTHO05D010087 8.5e-20 101.3 178 38.2
FAN28G0040 Fragaria x ananassa HOM05D007989 ORTHO05D010087 8.5e-20 101.3 203 36.5
Ciclev10026467m.g Citrus clementina HOM05D007989 ORTHO05D010087 1.2e-18 97.4 223 34.5
Rhsim10G0168900 Rhododendron simsii HOM05D007989 ORTHO05D010087 1.6e-18 97.1 119 47.9
MD15G1317900 Malus domestica HOM05D007989 ORTHO05D010087 2.7e-18 96.3 206 33.0
Hma1.2p1_0019F.1_g013880 Hydrangea macrophylla HOM05D007989 ORTHO05D010087 4.6e-18 95.5 153 41.2
AUR62027199 Chenopodium quinoa HOM05D007989 ORTHO05D010087 7.9e-18 94.7 198 35.9
Potri.007G097400 Populus trichocarpa HOM05D007989 ORTHO05D010087 7.9e-18 94.7 155 41.9
Aqoxy6G00707 Aquilegia oxysepala HOM05D007989 ORTHO05D010087 2.3e-17 93.2 176 35.8
CANSAT01G0464 Cannabis sativa HOM05D007989 ORTHO05D010087 2.3e-17 93.2 191 36.1
Sabra05G0058400 Salix brachista HOM05D007989 ORTHO05D010087 2.3e-17 93.2 208 32.7
Nn1g05466 Nelumbo nucifera HOM05D007989 ORTHO05D010087 5.1e-17 92.0 199 35.7
Glyma.18G014700 Glycine max HOM05D007989 ORTHO05D010087 1.1e-16 90.9 185 36.2
Manes.13G097300 Manihot esculenta HOM05D007989 ORTHO05D010087 1.1e-16 90.9 187 37.4
Phvul.001G254200 Phaseolus vulgaris HOM05D007989 ORTHO05D010087 2.0e-16 90.1 173 38.2
vmacro12990 Vaccinium macrocarpon HOM05D007989 ORTHO05D010087 3.3e-16 89.4 118 43.2
Potri.005G071400 Populus trichocarpa HOM05D007989 ORTHO05D010087 5.7e-16 88.6 208 32.2
Glyma.11G242400 Glycine max HOM05D007989 ORTHO05D010087 7.4e-16 88.2 132 42.4
TAR628G0250 Trochodendron aralioides HOM05D007989 ORTHO05D010087 7.4e-16 88.2 173 36.4
PSO541G3922 Papaver somniferum HOM05D007989 ORTHO05D010087 1.7e-15 87.0 186 37.1
Ca_30637_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 2.2e-15 86.7 167 36.5
PSO675G2967 Papaver somniferum HOM05D007989 ORTHO05D010087 2.8e-15 86.3 188 32.4
PGR004G2401 Punica granatum HOM05D007989 ORTHO05D010087 8.2e-15 84.7 167 35.3
VMungo1383G0535 Vigna mungo HOM05D007989 ORTHO05D010087 1.1e-14 84.3 211 36.5
Actinidia06535 Actinidia chinensis HOM05D007989 ORTHO05D010087 3.1e-14 82.8 120 44.2
arahy.Tifrunner.gnm1.ann1.92LXSJ Arachis hypogaea HOM05D007989 ORTHO05D010087 4.1e-14 82.4 121 47.1
arahy.Tifrunner.gnm1.ann1.FU6RJX Arachis hypogaea HOM05D007989 ORTHO05D010087 4.1e-14 82.4 121 47.1
Sabra07G0080700 Salix brachista HOM05D007989 ORTHO05D010087 2.0e-13 80.1 116 42.2
TPR.G30536 Trifolium pratense HOM05D007989 ORTHO05D010087 2.0e-13 80.1 172 36.6
Medtr3g086760 Medicago truncatula HOM05D007989 ORTHO05D010087 3.4e-13 79.3 169 37.3
Oeu002158.1 Olea europaea HOM05D007989 ORTHO05D010087 4.5e-13 79.0 128 36.7
Lj6g0026253 Lotus japonicus HOM05D007989 ORTHO05D010087 1.1e-11 74.3 142 38.0
Psat1g083960 Pisum sativum HOM05D007989 ORTHO05D010087 1.1e-11 74.3 160 36.2
Lalb_Chr08g0230941 Lupinus albus HOM05D007989 ORTHO05D010087 5.5e-11 72.0 114 41.2
MELO3C018999.2 Cucumis melo HOM05D007989 ORTHO05D010087 1.6e-10 70.5 147 42.9
CsaV3_4G009020 Cucumis sativus L. HOM05D007989 ORTHO05D010087 3.6e-10 69.3 178 37.6
ClCG10G008400 Citrullus lanatus HOM05D007989 ORTHO05D010087 6.1e-10 68.6 101 42.6
HPP92_002319 Vanilla planifolia HOM05D007989 ORTHO05D010087 1.4e-09 67.4 147 31.3
Aa31LG1G27930 Aethionema arabicum HOM05D002476 ORTHO05D002652 3.0e-09 66.2 136 35.3
Sc16g0000320 Simmondsia chinensis HOM05D007989 ORTHO05D010087 3.0e-09 66.2 119 32.8
AT2G46550 Arabidopsis thaliana HOM05D002476 ORTHO05D002652 5.1e-09 65.5 152 32.2
CARHR141890 Cardamine hirsuta HOM05D002476 ORTHO05D002652 8.8e-09 64.7 136 33.8
BcaC02g07040 Brassica carinata HOM05D002476 ORTHO05D002652 4.4e-08 62.4 139 33.1
BcaNung06659 Brassica carinata HOM05D002476 ORTHO05D002652 4.4e-08 62.4 139 33.1
BraA04t18904Z Brassica rapa HOM05D002476 ORTHO05D002652 4.4e-08 62.4 145 33.1
A04p34460 Brassica napus HOM05D002476 ORTHO05D002652 7.4e-08 61.6 145 32.4
BolC4t28710H Brassica oleracea HOM05D002476 ORTHO05D002652 7.4e-08 61.6 135 33.3
Ca_16505_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 7.4e-08 61.6 115 33.9
C05p00710 Brassica napus HOM05D002476 ORTHO05D002652 9.7e-08 61.2 145 31.0
A05p01220 Brassica napus HOM05D002476 ORTHO05D002652 1.3e-07 60.8 150 32.0
Carub.0004s2927 Capsella rubella HOM05D002476 ORTHO05D002652 1.3e-07 60.8 144 31.9
Zm00001eb033460 Zea mays HOM05D007989 ORTHO05D010087 1.3e-07 60.8 147 33.3
A10p00670 Brassica napus HOM05D002476 ORTHO05D002652 1.7e-07 60.5 145 30.3
BraA05t19123Z Brassica rapa HOM05D002476 ORTHO05D002652 1.7e-07 60.5 150 32.0
Thhalv10001490m.g Eutrema salsugineum HOM05D002476 ORTHO05D002652 1.7e-07 60.5 150 30.7
Sp4g28600 Schrenkiella parvula HOM05D002476 ORTHO05D002652 1.7e-07 60.5 153 30.1
Aa31LG1G10610 Aethionema arabicum HOM05D002476 ORTHO05D002652 2.8e-07 59.7 110 36.4
BcaC02g07017 Brassica carinata HOM05D002476 ORTHO05D002652 2.8e-07 59.7 140 32.1
BcaC02g12672 Brassica carinata HOM05D002476 ORTHO05D002652 2.8e-07 59.7 150 31.3
AL1G11220 Arabidopsis lyrata HOM05D002476 ORTHO05D002652 6.3e-07 58.5 204 28.9
AT1G01240 Arabidopsis thaliana HOM05D002476 ORTHO05D002652 6.3e-07 58.5 202 29.2
BraA10t42344Z Brassica rapa HOM05D002476 ORTHO05D002652 1.1e-06 57.8 129 31.8
C04p72220 Brassica napus HOM05D002476 ORTHO05D002652 1.4e-06 57.4 139 33.1
Gorai.001G153700 Gossypium raimondii HOM05D002476 ORTHO05D002652 1.4e-06 57.4 169 30.8
AL4G45980 Arabidopsis lyrata HOM05D002476 ORTHO05D002652 1.8e-06 57.0 153 29.4
BolC8t52874H Brassica oleracea HOM05D002476 ORTHO05D002652 1.8e-06 57.0 189 32.8
Ca_12783_v3 Cicer arietinum L. HOM05D002476 ORTHO05D002652 1.8e-06 57.0 114 33.3
Ca_12787_v3 Cicer arietinum L. HOM05D002476 ORTHO05D002652 1.8e-06 57.0 114 33.3
Ca_29819_v3 Cicer arietinum L. HOM05D002476 ORTHO05D002652 1.8e-06 57.0 114 33.3
Gohir.D07G142033 Gossypium hirsutum HOM05D002476 ORTHO05D002652 1.8e-06 57.0 169 29.6
A09p69030 Brassica napus HOM05D002476 ORTHO05D002652 3.1e-06 56.2 188 28.7
BraA09t42240Z Brassica rapa HOM05D002476 ORTHO05D002652 3.1e-06 56.2 188 28.2
CDE10G0158 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 3.1e-06 56.2 171 27.5
Sp1g01040 Schrenkiella parvula HOM05D002476 ORTHO05D002652 3.1e-06 56.2 205 30.7
CARHR001220 Cardamine hirsuta HOM05D002476 ORTHO05D002652 4.1e-06 55.8 147 29.9
arahy.Tifrunner.gnm1.ann1.9N50L0 Arachis hypogaea HOM05D002476 ORTHO05D002652 5.3e-06 55.5 188 26.1
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 5.3e-06 55.5 152 30.3
Os08g0483100 Oryza sativa ssp. japonica HOM05D007989 ORTHO05D010087 7.0e-06 55.1 159 35.8
C04p01370 Brassica napus HOM05D002476 ORTHO05D002652 9.1e-06 54.7 152 29.6
BolC4t21790H Brassica oleracea HOM05D002476 ORTHO05D002652 9.1e-06 54.7 152 29.6


User provided reference genes

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