Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 1.6e-71 272.7 141 100.0
Solyc11g010250.1 Solanum lycopersicum HOM05D008176 ORTHO05D004477 8.4e-65 250.4 142 94.4
PGSC0003DMG400016149 Solanum tuberosum HOM05D008176 ORTHO05D004477 2.4e-64 248.8 141 92.9
Peaxi162Scf00237g00201 Petunia axillaris HOM05D008176 ORTHO05D004477 1.1e-56 223.4 141 80.1
Nitab4.5_0003888g0010 Nicotiana tabacum HOM05D013332 ORTHO05D004477 1.2e-34 150.2 102 79.4
Nitab4.5_0012818g0010 Nicotiana tabacum HOM05D008176 ORTHO05D004477 2.6e-34 149.1 138 63.8
Nitab4.5_0000241g0190 Nicotiana tabacum HOM05D008176 ORTHO05D004477 7.6e-34 147.5 102 78.4
Sopen05g029890 Solanum pennellii HOM05D008176 ORTHO05D004477 1.0e-33 147.1 141 61.0
Nitab4.5_0000128g0240 Nicotiana tabacum HOM05D008176 ORTHO05D004477 6.5e-33 144.4 129 65.1
PGSC0003DMG400016792 Solanum tuberosum HOM05D008176 ORTHO05D004477 2.2e-28 129.4 145 57.9
PGSC0003DMG400016791 Solanum tuberosum HOM05D008176 ORTHO05D004477 1.4e-22 110.2 135 51.1
Sopen05g029880 Solanum pennellii HOM05D008176 ORTHO05D004477 2.2e-20 102.8 127 52.0
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 1.7e-17 93.2 132 48.5
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 1.6e-15 86.7 141 44.0
QL06p048130 Quercus lobata HOM05D008176 ORTHO05D004477 1.6e-15 86.7 139 44.6
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 2.7e-15 85.9 145 42.8
CiPaw.03G145800 Carya illinoinensis HOM05D008176 ORTHO05D004477 1.0e-14 84.0 149 45.0
Dinv13234 Davidia involucrata HOM05D008176 ORTHO05D004477 1.4e-14 83.6 147 42.2
Gohir.A02G129700 Gossypium hirsutum HOM05D008176 ORTHO05D004477 4.4e-13 78.6 141 39.0
RcHm_v2.0_Chr2g0112381 Rosa chinensis HOM05D013332 ORTHO05D004477 4.4e-13 78.6 161 42.2
MSTRG.23362 Avicennia marina HOM05D008176 ORTHO05D004477 5.7e-13 78.2 146 43.8
CiPaw.04G103600 Carya illinoinensis HOM05D008176 ORTHO05D004477 5.7e-13 78.2 143 42.0
Manes.12G129900 Manihot esculenta HOM05D008176 ORTHO05D004477 7.4e-13 77.8 147 40.8
Gohir.D03G040500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 9.7e-13 77.4 141 38.3
Gorai.003G041400 Gossypium raimondii HOM05D008176 ORTHO05D004477 1.3e-12 77.0 141 38.3
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 2.2e-12 76.3 147 41.5
Potri.005G072000 Populus trichocarpa HOM05D008176 ORTHO05D004477 2.8e-12 75.9 140 39.3
Duzib187G0825 Durio zibethinus HOM05D008176 ORTHO05D004477 3.7e-12 75.5 150 40.0
Duzib264G0386 Durio zibethinus HOM05D008176 ORTHO05D004477 4.8e-12 75.1 145 44.1
SalBow3G2508 Salvia bowleyana HOM05D029310 ORTHO05D004477 8.2e-12 74.3 147 39.5
SalBow3G3284 Salvia bowleyana HOM05D029310 ORTHO05D004477 8.2e-12 74.3 147 39.5
SGA_v2.0_scaffold108G30894 Striga asiatica HOM05D008176 ORTHO05D004477 1.8e-11 73.2 159 39.6
Ca_08988_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 2.4e-11 72.8 137 40.9
FAN23G0907 Fragaria x ananassa HOM05D013332 ORTHO05D004477 2.4e-11 72.8 159 37.7
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 2.4e-11 72.8 141 39.0
TWI53G0271 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 4.1e-11 72.0 145 35.2
Thecc.01G095600 Theobroma cacao HOM05D008176 ORTHO05D004477 7.0e-11 71.2 143 40.6
VMungo1383G1959 Vigna mungo HOM05D008176 ORTHO05D004477 7.0e-11 71.2 141 37.6
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 7.0e-11 71.2 147 36.1
COL.COLO4_27295 Corchorus olitorius HOM05D008176 ORTHO05D004477 9.1e-11 70.9 141 40.4
FAN28G1274 Fragaria x ananassa HOM05D013332 ORTHO05D004477 9.1e-11 70.9 159 37.7
Nn1g05455 Nelumbo nucifera HOM05D008046 ORTHO05D004477 1.2e-10 70.5 143 36.4
Lj4g0008028 Lotus japonicus HOM05D008176 ORTHO05D004477 1.6e-10 70.1 136 43.4
Atru.chr3.1344 Acer truncatum HOM05D008176 ORTHO05D004477 2.0e-10 69.7 139 41.7
DCAR_014203 Daucus carota HOM05D013332 ORTHO05D004477 3.5e-10 68.9 145 37.9
FAN26G3011 Fragaria x ananassa HOM05D013332 ORTHO05D004477 3.5e-10 68.9 159 37.1
Aqoxy6G00716 Aquilegia oxysepala HOM05D008046 ORTHO05D004477 4.5e-10 68.6 135 37.0
Cc10_g06700 Coffea canephora HOM05D008046 ORTHO05D004477 7.7e-10 67.8 154 35.1
FAN19G2695 Fragaria x ananassa HOM05D013332 ORTHO05D004477 7.7e-10 67.8 159 36.5
Sc26g0000200 Simmondsia chinensis HOM05D013332 ORTHO05D004477 1.3e-09 67.0 144 38.9
Haze_24851 Corylus avellana HOM05D008176 ORTHO05D004477 2.9e-09 65.9 139 41.0
Gohir.A05G265833 Gossypium hirsutum HOM05D008046 ORTHO05D004477 2.9e-09 65.9 145 39.3
Manes.13G096700 Manihot esculenta HOM05D008176 ORTHO05D004477 2.9e-09 65.9 142 35.9
Glyma.18G015000 Glycine max HOM05D008176 ORTHO05D004477 3.8e-09 65.5 124 41.1
Glyma.08G133100 Glycine max HOM05D008176 ORTHO05D004477 6.5e-09 64.7 136 36.8
Gorai.007G059700 Gossypium raimondii HOM05D008176 ORTHO05D004477 6.5e-09 64.7 147 36.7
Lsat_1_v5_gn_1_3180 Lactuca sativa HOM05D008046 ORTHO05D004477 6.5e-09 64.7 141 36.9
Cfa002600 Carpinus fangiana HOM05D008176 ORTHO05D004477 1.1e-08 63.9 133 36.8
Gohir.A11G051100 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.1e-08 63.9 147 36.7
Hma1.2p1_0019F.1_g013800 Hydrangea macrophylla HOM05D013332 ORTHO05D004477 1.1e-08 63.9 156 32.7
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 1.1e-08 63.9 145 37.9
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.5e-08 63.5 139 33.8
FvH4_1g20240 Fragaria vesca HOM05D013332 ORTHO05D004477 1.5e-08 63.5 159 35.2
Psat7g056440 Pisum sativum HOM05D008176 ORTHO05D004477 1.5e-08 63.5 139 38.1
Sabra07G0080300 Salix brachista HOM05D008176 ORTHO05D004477 1.5e-08 63.5 137 33.6
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.5e-08 62.8 141 34.8
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.5e-08 62.8 141 34.8
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 3.2e-08 62.4 139 33.8
Glyma.11G242100 Glycine max HOM05D008176 ORTHO05D004477 3.2e-08 62.4 130 38.5
Ciclev10026640m.g Citrus clementina HOM05D008176 ORTHO05D004477 4.2e-08 62.0 140 35.7
Gohir.A01G132600 Gossypium hirsutum HOM05D008046 ORTHO05D004477 4.2e-08 62.0 126 37.3
Thecc.08G102400 Theobroma cacao HOM05D008046 ORTHO05D004477 4.2e-08 62.0 135 35.6
TWI74G1149 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 4.2e-08 62.0 144 32.6
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 7.2e-08 61.2 125 36.8
Solyc04g074680.1 Solanum lycopersicum HOM05D010872 ORTHO05D004477 7.2e-08 61.2 143 34.3
CDE03G0262 Ceratophyllum demersum HOM05D001201 ORTHO05D004477 1.2e-07 60.5 131 33.6
Potri.002G100500 Populus trichocarpa HOM05D008046 ORTHO05D004477 1.2e-07 60.5 154 35.1
CSS0015684 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.6e-07 60.1 137 33.6
Phvul.001G253900 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 1.6e-07 60.1 125 40.0
Potri.005G161700 Populus trichocarpa HOM05D008046 ORTHO05D004477 1.6e-07 60.1 136 36.0
CSS0043643 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.1e-07 59.7 137 32.8
Gohir.A11G204400 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.1e-07 59.7 132 36.4
Cpa.g.sc55.74 Carica papaya HOM05D008176 ORTHO05D004477 2.7e-07 59.3 145 35.9
Gohir.D11G054500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.7e-07 59.3 152 35.5
Lsat_1_v5_gn_6_104300 Lactuca sativa HOM05D008046 ORTHO05D004477 3.6e-07 58.9 121 37.2
Sc23g0000380 Simmondsia chinensis HOM05D008046 ORTHO05D004477 3.6e-07 58.9 142 36.6
SGA_v2.0_scaffold115G32090 Striga asiatica HOM05D010872 ORTHO05D004477 3.6e-07 58.9 112 43.8
TPR.G16006 Trifolium pratense HOM05D008176 ORTHO05D004477 3.6e-07 58.9 143 35.7
Gorai.007G235100 Gossypium raimondii HOM05D008176 ORTHO05D004477 4.7e-07 58.5 132 36.4
Gohir.D11G218800 Gossypium hirsutum HOM05D008176 ORTHO05D004477 6.1e-07 58.2 131 36.6
Oeu048965.1 Olea europaea HOM05D008046 ORTHO05D004477 6.1e-07 58.2 131 36.6
Glyma.05G175800 Glycine max HOM05D008176 ORTHO05D004477 8.0e-07 57.8 136 34.6
TPR.G6203 Trifolium pratense HOM05D008176 ORTHO05D004477 8.0e-07 57.8 137 38.0
Carub.0008s2618 Capsella rubella HOM05D010563 ORTHO05D012591 1.0e-06 57.4 139 36.7
Gohir.D05G267950 Gossypium hirsutum HOM05D008046 ORTHO05D004477 1.0e-06 57.4 148 38.5
CDE05G1898 Ceratophyllum demersum HOM05D000157 ORTHO05D000691 1.4e-06 57.0 124 37.9
Psat5g090880 Pisum sativum HOM05D008176 ORTHO05D004477 1.4e-06 57.0 148 33.8
COL.COLO4_12009 Corchorus olitorius HOM05D008046 ORTHO05D004477 2.3e-06 56.2 143 31.5
Potri.007G097000 Populus trichocarpa HOM05D008176 ORTHO05D004477 2.3e-06 56.2 129 37.2
Gorai.009G280100 Gossypium raimondii HOM05D008046 ORTHO05D004477 3.0e-06 55.8 154 38.3
Medtr8g089920 Medicago truncatula HOM05D008176 ORTHO05D004477 3.0e-06 55.8 131 40.5
Eucgr.B00040 Eucalyptus grandis HOM05D008046 ORTHO05D004477 4.0e-06 55.5 143 35.7
Medtr3g086830 Medicago truncatula HOM05D008176 ORTHO05D004477 4.0e-06 55.5 136 32.4
Duzib116G0877 Durio zibethinus HOM05D008046 ORTHO05D004477 5.2e-06 55.1 132 33.3
Sopen04g029650 Solanum pennellii HOM05D010872 ORTHO05D013672 6.7e-06 54.7 36 63.9
CiPaw.16G033000 Carya illinoinensis HOM05D008046 ORTHO05D004477 8.8e-06 54.3 149 30.9
PSO700G0164 Papaver somniferum HOM05D055938 ORTHO05D050202 8.8e-06 54.3 146 33.6
SGA_v2.0_scaffold45G17135 Striga asiatica HOM05D010872 ORTHO05D004477 8.8e-06 54.3 144 33.3


User provided reference genes

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