Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g010180.2 Solanum lycopersicum HOM05D005499 ORTHO05D006666 5.8e-68 260.8 131 100.0
Sopen11g004960 Solanum pennellii HOM05D005499 ORTHO05D006666 5.8e-68 260.8 131 100.0
PGSC0003DMG400016154 Solanum tuberosum HOM05D005499 ORTHO05D006666 7.8e-65 250.4 132 97.0
Nitab4.5_0000743g0030 Nicotiana tabacum HOM05D005499 ORTHO05D006666 1.0e-56 223.4 133 88.0
Nitab4.5_0012484g0010 Nicotiana tabacum HOM05D005499 ORTHO05D006666 1.0e-56 223.4 133 88.0
Peaxi162Scf00016g00048 Petunia axillaris HOM05D005499 ORTHO05D006666 1.2e-54 216.5 127 86.6
CAN.G905.22 Capsicum annuum HOM05D005499 ORTHO05D006666 5.2e-53 211.1 132 85.6
PGSC0003DMG400023637 Solanum tuberosum HOM05D005499 ORTHO05D006666 8.4e-51 203.8 133 79.7
Hma1.2p1_0279F.1_g112320 Hydrangea macrophylla HOM05D005499 ORTHO05D006666 2.7e-49 198.7 133 76.7
Nitab4.5_0003764g0020 Nicotiana tabacum HOM05D005499 ORTHO05D006666 3.5e-49 198.4 133 79.7
ECA238G0236 Erigeron canadensis HOM05D005499 ORTHO05D006666 3.9e-48 194.9 131 73.3
TPR.G3708 Trifolium pratense HOM05D005499 ORTHO05D006666 5.1e-48 194.5 132 72.0
Eucgr.J02294 Eucalyptus grandis HOM05D005499 ORTHO05D006666 8.6e-48 193.7 134 75.4
Lj6g0007933 Lotus japonicus HOM05D005499 ORTHO05D006666 1.1e-47 193.4 132 72.0
Rhsim10G0010400 Rhododendron simsii HOM05D005499 ORTHO05D006666 1.5e-47 193.0 132 75.8
VMungo0464G1619 Vigna mungo HOM05D005499 ORTHO05D006666 1.5e-47 193.0 132 72.7
HanXRQChr01g0030421 Helianthus annuus HOM05D005499 ORTHO05D006666 2.5e-47 192.2 131 73.3
Psat1g031800 Pisum sativum HOM05D005499 ORTHO05D006666 4.3e-47 191.4 132 72.0
CSS0020557 Camellia sinensis var. sinensis HOM05D005499 ORTHO05D006666 5.6e-47 191.0 134 73.1
Cpa.g.sc130.24 Carica papaya HOM05D005499 ORTHO05D006666 5.6e-47 191.0 134 72.4
COL.COLO4_29287 Corchorus olitorius HOM05D005499 ORTHO05D006666 7.3e-47 190.7 131 72.5
Dinv33378 Davidia involucrata HOM05D005499 ORTHO05D006666 9.6e-47 190.3 134 71.6
Lalb_Chr21g0317581 Lupinus albus HOM05D005499 ORTHO05D006666 9.6e-47 190.3 132 74.2
TAR371G0544 Trochodendron aralioides HOM05D005499 ORTHO05D006666 1.2e-46 189.9 133 72.9
Atru.chr6.2492 Acer truncatum HOM05D005499 ORTHO05D006666 1.6e-46 189.5 134 73.9
CiPaw.03G051000 Carya illinoinensis HOM05D005499 ORTHO05D006666 2.1e-46 189.1 132 72.0
Phvul.003G262000 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 2.1e-46 189.1 131 69.5
Lalb_Chr02g0157891 Lupinus albus HOM05D005499 ORTHO05D006666 2.8e-46 188.7 132 72.7
Oeu003270.1 Olea europaea HOM05D005499 ORTHO05D006666 2.8e-46 188.7 133 73.7
Duzib264G0656 Durio zibethinus HOM05D005499 ORTHO05D006666 3.6e-46 188.3 132 75.0
Nn4g24319 Nelumbo nucifera HOM05D005499 ORTHO05D006666 3.6e-46 188.3 133 71.4
Medtr6g078300 Medicago truncatula HOM05D005499 ORTHO05D006666 6.2e-46 187.6 133 70.7
Ca_25364_v3 Cicer arietinum L. HOM05D005499 ORTHO05D006666 8.1e-46 187.2 133 69.2
Haze_14820 Corylus avellana HOM05D005499 ORTHO05D006666 1.1e-45 186.8 132 69.7
Migut.K01440 Erythranthe guttata HOM05D005499 ORTHO05D006666 1.1e-45 186.8 132 69.7
Glyma.19G077100 Glycine max HOM05D005499 ORTHO05D006666 1.1e-45 186.8 132 71.2
Lsat_1_v5_gn_3_10761 Lactuca sativa HOM05D005499 ORTHO05D006666 1.1e-45 186.8 136 69.1
Thecc.04G028500 Theobroma cacao HOM05D005499 ORTHO05D006666 1.1e-45 186.8 132 72.7
Sed0019428 Sechium edule HOM05D005499 ORTHO05D006666 1.4e-45 186.4 133 69.9
DCAR_011296 Daucus carota HOM05D005499 ORTHO05D006666 1.8e-45 186.0 132 70.5
arahy.Tifrunner.gnm1.ann1.C4BPDT Arachis hypogaea HOM05D005499 ORTHO05D006666 2.4e-45 185.7 132 72.7
Duzib187G1007 Durio zibethinus HOM05D005499 ORTHO05D006666 2.4e-45 185.7 132 74.2
Glyma.05G073700 Glycine max HOM05D005499 ORTHO05D006666 2.4e-45 185.7 132 70.5
SalBow7G4317 Salvia bowleyana HOM05D005499 ORTHO05D006666 2.4e-45 185.7 132 69.7
Potri.001G335600 Populus trichocarpa HOM05D005499 ORTHO05D006666 3.1e-45 185.3 132 72.0
ClCG04G001400 Citrullus lanatus HOM05D005499 ORTHO05D006666 5.2e-45 184.5 135 71.9
Prupe.6G125800 Prunus persica HOM05D005499 ORTHO05D006666 8.9e-45 183.7 134 68.7
CANSAT11G2604 Cannabis sativa HOM05D005499 ORTHO05D006666 1.2e-44 183.3 108 83.3
arahy.Tifrunner.gnm1.ann1.JB8R4I Arachis hypogaea HOM05D005499 ORTHO05D006666 2.0e-44 182.6 132 71.2
Phvul.003G138900 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 2.0e-44 182.6 132 71.2
Phvul.003G139152 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 2.0e-44 182.6 132 71.2
Cfa007270 Carpinus fangiana HOM05D005499 ORTHO05D006666 2.6e-44 182.2 132 68.2
Gorai.012G089400 Gossypium raimondii HOM05D005499 ORTHO05D006666 2.6e-44 182.2 132 72.7
Manes.15G156800 Manihot esculenta HOM05D005499 ORTHO05D006666 3.4e-44 181.8 134 73.1
RcHm_v2.0_Chr3g0449841 Rosa chinensis HOM05D005499 ORTHO05D006666 3.4e-44 181.8 131 71.0
SGA_v2.0_scaffold47G17558 Striga asiatica HOM05D005499 ORTHO05D006666 3.4e-44 181.8 133 71.4
AUR62036750 Chenopodium quinoa HOM05D005499 ORTHO05D006666 5.8e-44 181.0 132 69.7
Sc10g0004570 Simmondsia chinensis HOM05D005499 ORTHO05D006666 5.8e-44 181.0 133 69.2
AUR62013851 Chenopodium quinoa HOM05D005499 ORTHO05D006666 9.9e-44 180.3 132 68.9
Cc10_g08070 Coffea canephora HOM05D005499 ORTHO05D006666 9.9e-44 180.3 133 71.4
QL02p072772 Quercus lobata HOM05D005499 ORTHO05D006666 2.2e-43 179.1 131 67.2
Sabra16G0216600 Salix brachista HOM05D005499 ORTHO05D006666 2.2e-43 179.1 132 69.7
TWI36G0940 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 2.2e-43 179.1 136 69.9
Gohir.D10G084868 Gossypium hirsutum HOM05D005499 ORTHO05D006666 2.9e-43 178.7 132 71.2
MELO3C008981.2 Cucumis melo HOM05D005499 ORTHO05D006666 3.8e-43 178.3 133 69.9
PSO478G5160 Papaver somniferum HOM05D005499 ORTHO05D006666 3.8e-43 178.3 133 69.9
Gorai.011G092800 Gossypium raimondii HOM05D005499 ORTHO05D006666 6.4e-43 177.6 132 70.5
MSTRG.3267 Avicennia marina HOM05D005499 ORTHO05D006666 8.4e-43 177.2 132 71.2
Ciclev10017154m.g Citrus clementina HOM05D005499 ORTHO05D006666 8.4e-43 177.2 134 70.1
Aqoxy5G03538 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 1.1e-42 176.8 134 69.4
PSO782G3924 Papaver somniferum HOM05D005499 ORTHO05D006666 1.9e-42 176.0 133 70.7
Gohir.D04G079400 Gossypium hirsutum HOM05D005499 ORTHO05D006666 2.4e-42 175.6 132 70.5
TAR629G1334 Trochodendron aralioides HOM05D005499 ORTHO05D006666 2.4e-42 175.6 134 70.1
unitig_32.g10669 Utricularia gibba HOM05D005499 ORTHO05D006666 2.4e-42 175.6 111 81.1
Actinidia05936 Actinidia chinensis HOM05D005499 ORTHO05D006666 3.2e-42 175.3 132 70.5
MBI11_g21381_MAGBIO Magnolia biondii HOM05D005499 ORTHO05D006666 3.2e-42 175.3 134 67.9
Ah.00g000560 Amaranthus hybridus HOM05D005499 ORTHO05D006666 7.1e-42 174.1 132 67.4
AL3G10400 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 7.1e-42 174.1 110 76.4
FAN05G0237 Fragaria x ananassa HOM05D005499 ORTHO05D006666 7.1e-42 174.1 136 67.6
FAN05G2282 Fragaria x ananassa HOM05D005499 ORTHO05D006666 7.1e-42 174.1 136 67.6
Gohir.A10G160300 Gossypium hirsutum HOM05D005499 ORTHO05D006666 7.1e-42 174.1 105 80.0
FvH4_6g02050 Fragaria vesca HOM05D005499 ORTHO05D006666 9.3e-42 173.7 136 67.6
FAN05G1403 Fragaria x ananassa HOM05D005499 ORTHO05D006666 9.3e-42 173.7 136 67.6
FAN09G0379 Fragaria x ananassa HOM05D005499 ORTHO05D006666 9.3e-42 173.7 136 67.6
FAN14G4216 Fragaria x ananassa HOM05D005499 ORTHO05D006666 9.3e-42 173.7 136 67.6
FAN05G4095 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.1e-41 172.6 136 66.9
CsaV3_4G031040 Cucumis sativus L. HOM05D005499 ORTHO05D006666 2.7e-41 172.2 119 73.1
TWI56G1275 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 3.5e-41 171.8 112 76.8
FAN14G1883 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.0e-40 170.2 134 67.2
Aqoxy3G01444 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 1.3e-40 169.9 135 66.7
EL10Ac2g02820 Beta vulgaris HOM05D005499 ORTHO05D006666 1.3e-40 169.9 132 68.2
FAN14G2627 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.3e-40 169.1 134 67.2
Carub.0003s0032 Capsella rubella HOM05D005499 ORTHO05D006666 6.6e-40 167.5 110 74.5
Aa31LG5G10870 Aethionema arabicum HOM05D005499 ORTHO05D006666 1.1e-39 166.8 118 71.2
FvH4_4g13440 Fragaria vesca HOM05D005499 ORTHO05D006666 1.1e-39 166.8 136 64.7
FAN12G0501 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.1e-39 166.8 136 64.7
CARHR199040 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.5e-39 166.4 110 77.3
C03p39430 Brassica napus HOM05D005499 ORTHO05D006666 1.9e-39 166.0 127 66.9
Hund13392 Selenicereus undatus HOM05D005499 ORTHO05D006666 1.9e-39 166.0 100 82.0
THA.LOC104822403 Tarenaya hassleriana HOM05D005499 ORTHO05D006666 1.9e-39 166.0 90 86.7
A03p32370 Brassica napus HOM05D005499 ORTHO05D006666 4.3e-39 164.9 110 74.5
BolC3t16211H Brassica oleracea HOM05D005499 ORTHO05D006666 4.3e-39 164.9 110 74.5
BraA03t12407Z Brassica rapa HOM05D005499 ORTHO05D006666 4.3e-39 164.9 110 74.5
Thhalv10014999m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 9.6e-39 163.7 110 73.6
Medtr4g073700 Medicago truncatula HOM05D005499 ORTHO05D006666 1.3e-38 163.3 132 64.4
AT3G01740 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 6.2e-38 161.0 92 79.3
CARHR075180 Cardamine hirsuta HOM05D005499 ORTHO05D006666 6.2e-38 161.0 92 81.5
QL05p048106 Quercus lobata HOM05D005499 ORTHO05D006666 6.2e-38 161.0 102 76.5
HPP92_006243 Vanilla planifolia HOM05D005499 ORTHO05D006666 1.8e-37 159.5 110 71.8
Psat7g172960 Pisum sativum HOM05D005499 ORTHO05D006666 2.4e-37 159.1 132 62.9
Cc07_g00480 Coffea canephora HOM05D005499 ORTHO05D006666 3.1e-37 158.7 134 62.7
Gohir.A05G341200 Gossypium hirsutum HOM05D005499 ORTHO05D006666 4.0e-37 158.3 131 66.4
AL6G24990 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 6.9e-37 157.5 101 75.2
Sp3g00320 Schrenkiella parvula HOM05D005499 ORTHO05D006666 6.9e-37 157.5 92 79.3
PSO782G2325 Papaver somniferum HOM05D005499 ORTHO05D006666 2.0e-36 156.0 120 67.5
Thhalv10021760m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 2.6e-36 155.6 92 78.3
AT5G14290 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 4.4e-36 154.8 110 70.9
Os12g0244200 Oryza sativa ssp. japonica HOM05D005499 ORTHO05D006666 4.9e-35 151.4 133 61.7
ATR1098G108 Amborella trichopoda HOM05D005499 ORTHO05D006666 6.4e-35 151.0 135 59.3
CARHR105740 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.9e-34 149.4 112 67.0
SHI11403 Sapria himalayana HOM05D005499 ORTHO05D006666 4.6e-33 144.8 105 67.6
Zm00001eb328460 Zea mays HOM05D005499 ORTHO05D006666 1.5e-31 139.8 133 56.4
FAN21G0236 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.3e-30 136.7 124 58.9
Sed0018883 Sechium edule HOM05D005499 ORTHO05D006666 1.4e-29 133.3 133 54.1
Nn1g08773 Nelumbo nucifera HOM05D005499 ORTHO05D006666 2.9e-27 125.6 119 58.0
SEGI_30393 Sequoiadendron giganteum HOM05D005499 ORTHO05D006666 2.9e-27 125.6 108 61.1
Gohir.1Z049635 Gossypium hirsutum HOM05D005499 ORTHO05D006666 2.5e-23 112.5 91 65.9
FAN02G3728 Fragaria x ananassa HOM05D005499 ORTHO05D006666 4.0e-21 105.1 57 82.5
Pp3c26_11040 Physcomitrium patens HOM05D005499 ORTHO05D006666 5.3e-21 104.8 92 55.4
Mapoly0005s0032 Marchantia polymorpha HOM05D005499 ORTHO05D006666 1.2e-20 103.6 91 54.9
CBR_g38683 Chara braunii HOM05D005499 ORTHO05D006666 2.0e-20 102.8 105 51.4
SMO164G0004 Selaginella moellendorffii HOM05D005499 ORTHO05D006666 1.3e-19 100.1 103 50.5
AagrBONN_evm.TU.Sc2ySwM_362.2497 Anthoceros agrestis HOM05D005499 ORTHO05D006666 2.9e-19 99.0 91 51.6
CARHR266370 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.5e-15 86.7 51 72.5
TAR374G0914 Trochodendron aralioides HOM05D005499 ORTHO05D006666 6.3e-14 81.3 62 67.7
Cre12.g546000 Chlamydomonas reinhardtii HOM05D005499 ORTHO05D006666 1.0e-11 73.9 99 40.4
MCO16G647 Micromonas commoda HOM05D005499 ORTHO05D006666 1.9e-10 69.7 124 39.5
Dinv24762 Davidia involucrata HOM05D003270 ORTHO05D003662 4.2e-10 68.6 116 39.7
CAN.G787.10 Capsicum annuum HOM05D005210 ORTHO05D010080 1.5e-07 60.1 52 67.3
Actinidia36173 Actinidia chinensis HOM05D005499 ORTHO05D006666 3.3e-07 58.9 80 50.0


User provided reference genes

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