Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 1.4e-173 612.8 314 100.0
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 4.2e-165 584.7 309 97.1
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 1.1e-162 576.6 314 94.9
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 2.7e-132 475.7 319 80.9
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 3.3e-122 442.2 313 76.4
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 4.8e-121 438.3 295 78.6
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 7.8e-79 298.1 335 54.3
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 1.2e-76 290.8 327 54.7
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 1.2e-74 284.3 326 51.8
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 1.2e-71 274.2 249 62.2
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 2.1e-68 263.5 297 55.6
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 2.6e-66 256.5 307 53.4
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.7e-65 253.8 313 51.1
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 6.4e-65 251.9 327 51.1
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 8.4e-65 251.5 238 62.2
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 2.4e-64 250.0 326 52.1
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 2.4e-64 250.0 284 54.2
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 4.2e-64 249.2 326 48.8
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 1.2e-63 247.7 303 51.5
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 2.7e-63 246.5 308 52.9
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 1.7e-62 243.8 286 54.5
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 3.0e-62 243.0 319 51.7
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 3.9e-62 242.7 334 50.9
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 5.1e-62 242.3 245 58.0
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 1.9e-61 240.4 233 56.7
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 2.5e-61 240.0 308 51.9
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 3.3e-61 239.6 308 51.9
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 1.3e-60 237.7 328 47.6
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.3e-60 237.7 261 54.0
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 2.1e-60 236.9 319 49.2
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 3.6e-60 236.1 260 53.5
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 8.1e-60 235.0 324 48.5
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 1.8e-59 233.8 310 47.4
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 3.1e-59 233.0 309 49.2
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 4.0e-59 232.6 321 47.4
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 6.9e-59 231.9 295 49.2
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 6.9e-59 231.9 321 48.6
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 9.0e-59 231.5 318 49.1
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 9.0e-59 231.5 369 42.5
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 9.0e-59 231.5 273 52.7
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 9.0e-59 231.5 294 51.7
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.2e-58 231.1 332 47.6
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 1.5e-58 230.7 324 47.8
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 2.6e-58 229.9 318 49.4
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 2.6e-58 229.9 316 48.4
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 4.4e-58 229.2 247 58.3
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 5.8e-58 228.8 303 49.8
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 4.9e-57 225.7 329 47.4
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 4.9e-57 225.7 300 50.0
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.4e-56 223.4 276 52.2
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 2.4e-56 223.4 224 62.1
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 2.4e-56 223.4 251 54.2
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 3.2e-56 223.0 304 49.3
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 3.2e-56 223.0 251 54.2
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 7.1e-56 221.9 279 51.6
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 6.0e-55 218.8 317 47.6
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.7e-54 217.2 321 46.7
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 2.3e-54 216.9 324 48.8
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 3.0e-54 216.5 213 59.6
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 3.0e-54 216.5 287 48.8
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 1.5e-53 214.2 322 49.4
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 3.3e-53 213.0 305 46.2
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 4.3e-53 212.6 196 61.7
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 7.4e-53 211.8 217 59.4
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 1.6e-52 210.7 248 50.0
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 2.1e-52 210.3 210 60.5
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 6.2e-52 208.8 254 50.0
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 1.4e-51 207.6 254 50.8
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 1.4e-51 207.6 204 59.3
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 1.8e-51 207.2 229 52.8
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 5.3e-51 205.7 252 54.0
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 5.3e-51 205.7 215 60.0
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 6.9e-51 205.3 228 56.1
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 6.9e-51 205.3 228 56.1
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 9.0e-51 204.9 210 58.6
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 2.0e-50 203.8 228 55.7
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 2.6e-50 203.4 241 51.0
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 4.5e-50 202.6 252 53.2
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 5.8e-50 202.2 209 55.0
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 5.8e-50 202.2 217 53.9
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 7.6e-50 201.8 331 45.0
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.3e-49 201.1 286 45.1
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 1.3e-49 201.1 222 57.2
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 2.2e-49 200.3 227 52.4
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 2.2e-49 200.3 213 54.5
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 2.9e-49 199.9 295 45.1
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 2.9e-49 199.9 202 57.4
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 3.8e-49 199.5 221 51.6
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 3.8e-49 199.5 221 51.6
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 4.9e-49 199.1 250 51.6
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 6.4e-49 198.7 295 44.7
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 1.1e-48 198.0 167 65.3
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.4e-48 197.6 237 53.6
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.4e-48 197.6 184 64.1
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 1.4e-48 197.6 315 42.9
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 1.9e-48 197.2 234 53.0
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 4.2e-48 196.1 255 47.1
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 4.2e-48 196.1 270 45.9
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 1.2e-47 194.5 194 61.3
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 2.1e-47 193.7 262 48.1
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 3.0e-46 189.9 159 69.2
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 1.5e-45 187.6 268 47.0
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 3.3e-45 186.4 162 64.2
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 1.6e-44 184.1 239 48.5
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.8e-44 183.3 272 48.2
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 2.8e-44 183.3 291 44.7
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 2.4e-43 180.3 226 48.2
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 4.5e-42 176.0 218 50.5
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.0e-41 174.9 160 64.4
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 1.3e-41 174.5 144 65.3
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.3e-41 174.5 228 49.1
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 1.7e-41 174.1 293 43.0
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 1.4e-40 171.0 175 60.0
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 4.2e-40 169.5 227 49.3
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 2.1e-39 167.2 219 48.4
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 6.0e-39 165.6 297 39.1
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 3.9e-38 162.9 163 55.2
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 6.7e-38 162.2 201 48.3
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 1.9e-37 160.6 175 52.0
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 1.9e-37 160.6 196 48.0
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 4.3e-37 159.5 142 64.8
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 5.7e-37 159.1 268 38.8
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 4.8e-36 156.0 109 76.1
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 1.5e-34 151.0 208 46.6
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 1.5e-34 151.0 131 65.6
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 5.1e-30 136.0 154 53.2
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 3.3e-29 133.3 119 63.9
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 1.3e-28 131.3 192 48.4
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 4.8e-28 129.4 230 43.0
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.2e-26 124.8 133 54.9
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 1.5e-26 124.4 152 55.3
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 4.5e-26 122.9 87 74.7
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 5.9e-26 122.5 111 60.4
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.3e-22 110.5 110 60.9
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.1e-19 101.7 103 53.4
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 7.7e-18 95.5 136 41.2
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 1.0e-17 95.1 180 40.0
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 8.5e-17 92.0 103 47.6
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 8.5e-17 92.0 101 55.4
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 4.2e-16 89.7 93 59.1
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.2e-15 88.2 61 78.7
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 4.7e-15 86.3 119 42.9
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 5.7e-13 79.3 141 36.2
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.2e-12 77.4 108 51.9
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 5.3e-11 72.8 46 84.8
Actinidia30832 Actinidia chinensis HOM05D005154 ORTHO05D006270 7.7e-10 68.9 235 31.9
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 7.7e-10 68.9 49 77.6
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 5.0e-09 66.2 118 44.1
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 9.4e-08 62.0 176 24.4


User provided reference genes

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