Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 1.6e-233 812.4 407 100.0
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 1.3e-222 776.2 406 95.3
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 1.0e-179 633.6 405 78.3
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 1.2e-175 620.2 362 85.4
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 6.6e-171 604.4 302 99.3
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 1.8e-139 500.0 410 64.6
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 1.3e-129 467.2 408 60.5
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 1.3e-129 467.2 397 61.0
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 3.4e-127 459.1 317 74.1
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 3.8e-126 455.7 404 59.2
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 1.1e-125 454.1 404 60.4
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 2.5e-125 453.0 420 59.8
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 4.2e-125 452.2 402 59.0
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 4.2e-125 452.2 403 58.8
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 7.1e-125 451.4 408 58.3
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 1.2e-124 450.7 404 59.2
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 1.6e-124 450.3 408 57.6
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 1.0e-123 447.6 355 64.5
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 1.8e-123 446.8 396 59.1
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 2.3e-123 446.4 401 59.9
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 2.3e-123 446.4 406 59.1
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 2.8e-121 439.5 400 54.2
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 8.2e-121 438.0 410 57.6
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 5.3e-120 435.3 404 57.2
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 5.3e-120 435.3 404 56.4
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 5.3e-120 435.3 397 57.2
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 1.2e-119 434.1 404 54.7
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 1.2e-119 434.1 404 57.4
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 1.2e-119 434.1 402 57.7
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 1.5e-119 433.7 405 54.6
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 2.6e-119 433.0 408 53.2
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 4.5e-119 432.2 403 54.6
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 1.0e-118 431.0 407 57.5
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 1.0e-118 431.0 407 54.3
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 1.0e-118 431.0 448 53.6
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 1.7e-118 430.3 410 56.1
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 6.5e-118 428.3 402 57.7
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 8.5e-118 427.9 415 56.6
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 8.5e-118 427.9 407 59.0
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 3.2e-117 426.0 402 58.0
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 9.4e-117 424.5 411 53.8
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 2.1e-116 423.3 440 53.9
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 7.9e-116 421.4 406 54.7
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 1.0e-115 421.0 402 57.2
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 1.8e-115 420.2 410 56.1
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 3.0e-115 419.5 403 56.8
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 3.9e-115 419.1 403 56.8
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 1.1e-114 417.5 406 57.1
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 2.0e-114 416.8 402 57.5
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 7.4e-114 414.8 402 57.5
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 1.4e-112 410.6 454 51.5
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 2.4e-112 409.8 407 54.8
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 1.2e-111 407.5 396 53.8
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 2.6e-111 406.4 409 55.7
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 7.7e-111 404.8 434 51.8
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 1.3e-110 404.1 416 52.9
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 2.2e-110 403.3 435 52.9
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 2.2e-110 403.3 417 55.9
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 1.4e-109 400.6 406 54.4
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 5.3e-104 382.1 485 47.2
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 3.8e-102 375.9 420 50.5
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 3.8e-102 375.9 393 54.7
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 1.9e-101 373.6 403 53.8
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 5.5e-101 372.1 408 49.8
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 8.0e-100 368.2 317 60.6
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 3.0e-99 366.3 404 50.2
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 3.3e-98 362.8 405 52.1
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 3.7e-97 359.4 532 43.8
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 1.4e-96 357.5 289 61.2
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 1.2e-95 354.4 304 60.5
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 8.5e-94 348.2 438 47.9
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 1.1e-93 347.8 400 48.5
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 5.5e-93 345.5 297 57.2
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 7.2e-93 345.1 285 62.5
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 3.0e-91 339.7 286 58.0
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.3e-89 334.3 406 48.8
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 1.8e-88 330.5 433 44.6
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 7.7e-87 325.1 451 45.0
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 3.8e-86 322.8 319 54.9
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 5.5e-85 318.9 465 45.6
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 2.0e-82 310.5 311 54.7
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 1.3e-81 307.8 315 52.7
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.7e-81 307.4 305 56.7
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.7e-81 307.4 309 52.8
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 2.8e-81 306.6 422 44.3
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 1.8e-80 303.9 330 51.8
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 7.0e-80 302.0 329 51.1
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 7.0e-80 302.0 305 53.4
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 1.1e-77 294.7 310 49.0
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 4.2e-77 292.7 329 52.6
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 1.0e-75 288.1 409 42.3
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 4.4e-74 282.7 276 56.9
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 2.8e-73 280.0 463 37.8
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 8.3e-73 278.5 283 53.4
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 1.1e-72 278.1 309 52.4
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 8.6e-70 268.5 438 43.2
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 1.5e-66 257.7 294 47.3
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.5e-66 257.7 410 42.9
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 2.9e-65 253.4 576 34.7
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 1.4e-64 251.1 351 41.6
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 3.4e-58 229.9 323 44.0
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.1e-56 224.9 157 72.0
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 1.7e-54 217.6 329 40.7
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 2.1e-52 210.7 320 41.9
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 2.6e-50 203.8 283 44.9
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 5.8e-50 202.6 264 41.3
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 9.9e-50 201.8 258 43.8
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 1.3e-49 201.4 184 57.1
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 6.0e-39 166.0 236 43.6
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 1.1e-37 161.8 299 36.5
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 8.1e-36 155.6 99 78.8
GSVIVG01006632001 Vitis vinifera HOM05D006096 ORTHO05D007775 9.0e-35 152.1 100 74.0
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 7.8e-31 139.0 283 35.3
Carub.0006s0878 Capsella rubella HOM05D006096 ORTHO05D007775 1.4e-27 128.3 85 71.8
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 9.0e-27 125.6 83 77.1
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 3.2e-24 117.1 83 67.5
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 2.7e-23 114.0 93 62.4
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 2.1e-20 104.4 117 44.4
HanXRQChr02g0032001 Helianthus annuus HOM05D006096 ORTHO05D007775 6.9e-19 99.4 69 72.5
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 5.8e-18 96.3 86 58.1
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 7.6e-18 95.9 67 70.1
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 5.1e-14 83.2 219 31.1
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 3.3e-13 80.5 54 70.4
SEGI_02986 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 1.1e-11 75.5 61 59.0
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 7.9e-07 59.3 88 43.2
RcHm_v2.0_Chr4g0406191 Rosa chinensis HOM05D006096 ORTHO05D007775 7.9e-07 59.3 62 53.2


User provided reference genes

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