Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 0.0e+00 1451.8 834 100.0
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 0.0e+00 1414.8 834 98.2
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 0.0e+00 1346.6 834 93.8
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 0.0e+00 1134.8 869 78.4
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 0.0e+00 1120.5 839 81.0
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 0.0e+00 1095.5 846 78.3
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 0.0e+00 1092.4 870 74.1
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 1.6e-219 766.9 821 62.0
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 1.6e-200 703.7 838 56.8
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 2.4e-199 699.9 836 57.8
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 4.0e-199 699.1 847 55.4
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 2.9e-197 693.0 842 56.5
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 2.4e-196 689.9 828 56.0
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.2e-195 687.6 827 57.0
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 1.6e-195 687.2 822 56.1
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 2.7e-195 686.4 822 56.1
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 7.9e-195 684.9 832 56.6
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 1.3e-194 684.1 879 52.2
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 5.1e-194 682.2 825 56.4
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 8.7e-194 681.4 833 56.1
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 2.1e-192 676.8 848 55.5
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 9.0e-191 671.4 847 56.0
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 5.8e-190 668.7 844 55.7
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 6.0e-187 658.7 827 53.6
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 1.0e-186 657.9 842 53.7
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 9.6e-185 651.4 841 53.9
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 2.1e-184 650.2 816 54.9
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 1.4e-183 647.5 823 53.8
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 3.1e-183 646.4 824 54.2
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 5.3e-183 645.6 829 53.8
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 1.9e-180 637.1 838 54.9
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 9.3e-180 634.8 825 52.5
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 1.6e-179 634.0 842 54.4
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 2.1e-179 633.6 891 48.7
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 1.0e-178 631.3 823 50.7
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 1.0e-178 631.3 819 52.6
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.8e-178 630.6 848 52.9
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 1.8e-178 630.6 839 53.3
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 1.1e-177 627.9 843 54.7
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 3.3e-177 626.3 820 53.4
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 5.7e-177 625.5 816 52.8
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 9.7e-177 624.8 820 53.4
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 6.3e-176 622.1 807 48.8
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 3.1e-175 619.8 817 51.4
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 6.9e-175 618.6 818 52.8
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 1.2e-174 617.8 823 54.1
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 7.7e-174 615.1 814 50.4
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 2.9e-173 613.2 788 55.3
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 1.9e-172 610.5 785 47.0
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 5.5e-172 609.0 840 52.0
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 9.4e-172 608.2 802 51.9
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.6e-171 607.4 828 52.4
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 2.7e-171 606.7 818 52.1
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 3.9e-170 602.8 815 50.4
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 6.7e-170 602.1 845 50.8
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 1.1e-169 601.3 842 51.3
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 1.1e-169 601.3 808 52.1
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 4.3e-169 599.4 823 48.5
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 5.7e-169 599.0 802 52.5
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 9.7e-169 598.2 796 49.6
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 9.7e-169 598.2 808 48.1
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 9.7e-169 598.2 779 52.9
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 2.8e-168 596.7 844 51.4
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 3.7e-168 596.3 818 46.8
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 4.8e-168 595.9 844 51.4
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 4.8e-168 595.9 812 46.4
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 6.3e-168 595.5 819 52.1
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 1.1e-167 594.7 814 49.9
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 4.1e-167 592.8 686 59.0
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 5.3e-167 592.4 845 51.2
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 5.3e-167 592.4 820 52.4
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 1.2e-166 591.3 839 50.4
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 6.5e-165 585.5 761 55.3
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 1.6e-163 580.9 830 48.9
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 4.7e-163 579.3 832 46.5
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 3.9e-162 576.2 745 54.8
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 1.1e-161 574.7 838 48.4
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 1.1e-161 574.7 819 47.1
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 1.3e-160 571.2 685 57.2
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 3.7e-160 569.7 798 51.9
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 8.2e-160 568.5 781 51.3
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 9.1e-159 565.1 805 49.7
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 2.9e-157 560.1 708 56.1
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 2.9e-157 560.1 816 46.0
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 3.8e-157 559.7 841 44.1
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 7.2e-156 555.4 825 49.2
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 9.4e-156 555.1 846 46.7
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 4.7e-155 552.7 805 51.3
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 2.6e-153 547.0 839 47.7
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 4.5e-150 536.2 848 47.1
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 5.2e-146 522.7 804 49.1
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 2.4e-143 513.8 971 43.2
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 5.4e-143 512.7 966 43.3
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 3.5e-142 510.0 780 45.1
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 2.1e-139 500.7 848 44.9
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 2.7e-139 500.4 495 54.9
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 3.6e-139 500.0 795 47.2
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 6.1e-139 499.2 795 47.0
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 4.0e-138 496.5 784 47.3
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 4.0e-138 496.5 784 47.2
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 3.5e-126 456.8 863 43.1
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 1.7e-125 454.5 867 42.8
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 6.4e-120 436.0 910 40.2
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 6.0e-118 429.5 847 43.3
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 2.3e-114 417.5 800 45.0
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 9.9e-105 385.6 497 47.9
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 2.2e-104 384.4 760 44.9
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 8.7e-93 345.9 818 36.6
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 4.0e-90 337.0 857 37.8
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 2.7e-86 324.3 590 48.3
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 3.5e-70 270.8 252 57.5
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 4.2e-63 247.3 460 37.6
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 4.6e-62 243.8 494 37.0
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 5.1e-61 240.4 583 32.2
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 4.3e-60 237.3 492 37.0
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 2.6e-57 228.0 840 28.6
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 8.2e-51 206.5 815 30.2
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 3.8e-40 171.0 670 33.1
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 5.0e-40 170.6 455 33.2
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 1.4e-37 162.5 197 50.8
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 1.5e-36 159.1 374 30.5
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 4.2e-31 141.0 189 45.0
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 4.7e-30 137.5 109 60.6
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 6.3e-27 127.1 195 41.5
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 7.0e-26 123.6 184 43.5
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 3.6e-22 111.3 125 49.6
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 3.6e-22 111.3 228 37.3
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 1.2e-14 86.3 120 45.0
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 1.4e-13 82.8 98 44.9
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 1.5e-12 79.3 66 53.0
Lju1609C0G6 Lonicera japonica HOM05D016202 ORTHO05D006406 1.4e-10 72.8 67 62.7
Lju1034A2T22 Lonicera japonica HOM05D016202 ORTHO05D006406 1.8e-10 72.4 73 56.2
Lj9A5T14 Lonicera japonica HOM05D016202 ORTHO05D006406 3.5e-09 68.2 69 56.5
Lju114A5T28 Lonicera japonica HOM05D005855 ORTHO05D006406 1.3e-08 66.2 296 28.4
Lju1609C0T10 Lonicera japonica HOM05D005855 ORTHO05D006406 3.0e-08 65.1 66 59.1
MSTRG.340 Avicennia marina HOM05D005855 ORTHO05D006406 5.0e-08 64.3 116 40.5
Lju170A31T10 Lonicera japonica HOM05D016202 ORTHO05D006406 2.5e-07 62.0 85 47.1
MCO02G251 Micromonas commoda HOM05D005855 ORTHO05D006406 3.3e-07 61.6 534 23.8
Cre12.g550152 Chlamydomonas reinhardtii HOM05D005855 ORTHO05D006406 1.2e-06 59.7 102 41.2
Lj1C955T6 Lonicera japonica HOM05D016202 ORTHO05D006406 2.8e-06 58.5 69 50.7
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 3.6e-06 58.2 47 57.4


User provided reference genes

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